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2024-05-25 08:34:56

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS

Number of genes found: 119

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Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
alaS alanyl-tRNA synthetaseRecName: Full=Alanine--tRNA ligase; EC=6.1.1.7; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; chromosome CDS440103 2637 + 0.24763
argS arginyl-tRNA synthetaseRecName: Full=Arginine--tRNA ligase; EC=6.1.1.19; AltName: Full=Arginyl-tRNA synthetase; Short=ArgRS; chromosome CDS271888 1725 - 0.263768
asnS asparaginyl-tRNA synthetaseRecName: Full=Asparagine--tRNA ligase; EC=6.1.1.22; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; chromosome CDS392443 1401 - 0.289079
aspS aspartyl-tRNA synthetaseRecName: Full=Aspartate--tRNA ligase; EC=6.1.1.12; AltName: Full=Aspartyl-tRNA synthetase; Short=AspRS; chromosome CDS349274 1761 + 0.247587
cca tRNA nucleotidyltransferaseRecName: Full=CCA-adding enzyme; EC=2.7.7.72; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl- transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; chromosome CDS66272 1245 + 0.26506
cysS cysteinyl-tRNA synthetaseRecName: Full=Cysteine--tRNA ligase; EC=6.1.1.16; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS; chromosome CDS536790 1395 - 0.25233
deaD ATP-dependent RNA helicase deaDRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS409362 1806 - 0.330011
def polypeptide deformylaseRecName: Full=Peptide deformylase; Short=PDF; EC=3.5.1.88; AltName: Full=Polypeptide deformylase; chromosome CDS544994 522 + 0.247126
efp elongation factor PRecName: Full=Elongation factor P; Short=EF-P; chromosome CDS20985 612 + 0.271242
fmt methionyl-tRNA formyltransferaseRecName: Full=Methionyl-tRNA formyltransferase; EC=2.1.2.9; chromosome CDS545523 945 + 0.268783
frr ribosome recycling factorRecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; chromosome CDS258051 558 + 0.268817
ftsJ cell division protein ftsJRecName: Full=Ribosomal RNA large subunit methyltransferase E; EC=2.1.1.166; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2-O-)-methyltransferase; chromosome CDS424252 621 - 0.273752
fusA elongation factor GRecName: Full=Elongation factor G; Short=EF-G; chromosome CDS561787 2109 - 0.336178
glnS glutaminyl-tRNA synthetaseRecName: Full=Glutamine--tRNA ligase; EC=6.1.1.18; AltName: Full=Glutaminyl-tRNA synthetase; Short=GlnRS; chromosome CDS449495 1716 + 0.253496
gltX glutamyl-tRNA synthetaseRecName: Full=Glutamate--tRNA ligase; EC=6.1.1.17; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; chromosome CDS74771 1404 + 0.263533
glyQ glycyl-tRNA synthetase alpha chainRecName: Full=Glycine--tRNA ligase alpha subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase alpha subunit; Short=GlyRS; chromosome CDS142235 969 - 0.272446
glyS glycyl-tRNA synthetase beta chainRecName: Full=Glycine--tRNA ligase beta subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase beta subunit; Short=GlyRS; chromosome CDS140188 2073 - 0.23396
gshB glutathione synthetaseRecName: Full=Glutathione synthetase; EC=6.3.2.3; AltName: Full=GSH synthetase; Short=GSH-S; Short=GSHase; AltName: Full=Glutathione synthase; chromosome CDS583707 963 + 0.284528
hemK hemK proteinRecName: Full=Release factor glutamine methyltransferase; Short=RF MTase; EC=2.1.1.297; AltName: Full=M.BusHemKP; AltName: Full=N5-glutamine methyltransferase PrmC; AltName: Full=Protein-(glutamine-N5) MTase PrmC; AltName: Full=Protein-glutamine N-methyltransferase PrmC; chromosome CDS185620 834 + 0.258993
hisS histidyl-tRNA synthetaseRecName: Full=Histidine--tRNA ligase; EC=6.1.1.21; AltName: Full=Histidyl-tRNA synthetase; Short=HisRS; chromosome CDS315404 1272 + 0.249214
ileS isoleucyl-tRNA synthetaseRecName: Full=Isoleucine--tRNA ligase; EC=6.1.1.5; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS; chromosome CDS156645 2823 - 0.266029
infA translation initiation factor IF-1RecName: Full=Translation initiation factor IF-1; chromosome CDS348887 219 + 0.30137
infB translation initiation factor IF-2RecName: Full=Translation initiation factor IF-2; chromosome CDS415631 2595 - 0.285164
infC translation initiation factor IF-3RecName: Full=Translation initiation factor IF-3; chromosome CDS132392 540 + 0.32037
ksgA dimethyladenosine transferaseRecName: Full=Ribosomal RNA small subunit methyltransferase A; EC=2.1.1.182; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase; chromosome CDS147408 822 + 0.22871
leuS leucyl-tRNA synthetaseRecName: Full=Leucine--tRNA ligase; EC=6.1.1.4; AltName: Full=Leucyl-tRNA synthetase; Short=LeuRS; chromosome CDS483881 2580 + 0.263178
lysS lysyl-tRNA synthetaseRecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS; chromosome CDS476393 1521 + 0.25904
map methionine aminopeptidaseRecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; chromosome CDS254517 795 - 0.272956
metG methionyl-tRNA synthetaseRecName: Full=Methionine--tRNA ligase; EC=6.1.1.10; AltName: Full=Methionyl-tRNA synthetase; Short=MetRS; chromosome CDS113965 1644 + 0.252433
miaA tRNA delta(2)-isopentenylpyrophosphate transferaseRecName: Full=tRNA dimethylallyltransferase; EC=2.5.1.75; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase; chromosome CDS601487 909 - 0.258526
pheS phenylalanyl-tRNA synthetase alpha chainRecName: Full=Phenylalanine--tRNA ligase alpha subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS; chromosome CDS133809 990 + 0.253535
pnp polyribonucleotide nucleotidyltransferaseRecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; chromosome CDS411548 2124 - 0.327684
prfA peptide chain release factor 1RecName: Full=Peptide chain release factor 1; Short=RF-1; chromosome CDS184538 1086 + 0.308471
prfB peptide chain release factor 2RecName: Full=Peptide chain release factor 2; Short=RF-2; chromosome CDS475334 1050 + 0.284762
prfC peptide chain release factor 3RecName: Full=Peptide chain release factor 3; Short=RF-3; chromosome CDS576996 1581 - 0.280202
proS prolyl-tRNA synthetaseRecName: Full=Proline--tRNA ligase; EC=6.1.1.15; AltName: Full=Prolyl-tRNA synthetase; Short=ProRS; chromosome CDS266472 1719 - 0.254218
pth peptidyl-tRNA hydrolaseRecName: Full=Peptidyl-tRNA hydrolase; Short=PTH; EC=3.1.1.29; chromosome CDS205262 534 + 0.250936
queA S-adenosylmethionine:tRNAribosyltransferase-isom eraseRecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase; EC=2.4.99.17; AltName: Full=Queuosine biosynthesis protein QueA; chromosome CDS137550 1074 + 0.277467
rbfA ribosome-binding factor ARecName: Full=Ribosome-binding factor A; chromosome CDS415223 363 - 0.23416
rimM 16s rRNA processing protein rimmRecName: Full=Ribosome maturation factor RimM; chromosome CDS433588 531 + 0.218456
rluC ribosomal large subunit pseudouridine synthase CRecName: Full=Ribosomal large subunit pseudouridine synthase C; EC=5.4.99.24; AltName: Full=23S rRNA pseudouridine(955/2504/2580) synthase; AltName: Full=rRNA pseudouridylate synthase C; AltName: Full=rRNA-uridine isomerase C; chromosome CDS382339 945 + 0.259259
rluD ribosomal large subunit pseudouridine synthase DRecName: Full=Ribosomal large subunit pseudouridine synthase D; EC=5.4.99.23; AltName: Full=23S rRNA pseudouridine(1911/1915/1917) synthase; AltName: Full=rRNA pseudouridylate synthase D; AltName: Full=rRNA-uridine isomerase D; chromosome CDS438095 939 - 0.292865
rne ribonuclease ERecName: Full=Ribonuclease E; Short=RNase E; EC=3.1.26.12; chromosome CDS379296 2709 - 0.262458
rnpA ribonuclease P protein componentRecName: Full=Ribonuclease P protein component; Short=RNase P protein; Short=RNaseP protein; EC=3.1.26.5; AltName: Full=Protein C5; chromosome CDS14525 348 + 0.247126
rplA 50S ribosomal protein L1RecName: Full=50S ribosomal protein L1; chromosome CDS46069 696 - 0.297414
rplB 50S ribosomal protein L2RecName: Full=50S ribosomal protein L2; chromosome CDS557474 822 - 0.345499
rplC 50S ribosomal protein L3RecName: Full=50S ribosomal protein L3; chromosome CDS559232 630 - 0.325397
rplD 50S ribosomal protein L4RecName: Full=50S ribosomal protein L4; chromosome CDS558609 606 - 0.326733
rplE 50S ribosomal protein L5RecName: Full=50S ribosomal protein L5; chromosome CDS553832 540 - 0.322222
rplF 50S ribosomal protein L6RecName: Full=50S ribosomal protein L6; chromosome CDS552541 573 - 0.312391
rplI 50S ribosomal protein L9RecName: Full=50S ribosomal protein L9; chromosome CDS594138 453 - 0.282561
rplJ 50S ribosomal protein L10RecName: Full=50S ribosomal protein L10; chromosome CDS45306 498 - 0.287149
rplK 50S ribosomal protein L11RecName: Full=50S ribosomal protein L11; chromosome CDS46767 429 - 0.296037
rplL 50S ribosomal protein L7/L12RecName: Full=50S ribosomal protein L7/L12; chromosome CDS44871 369 - 0.317073
rplM 50S ribosomal protein L13RecName: Full=50S ribosomal protein L13; chromosome CDS429864 429 - 0.286713
rplN 50S ribosomal protein L14RecName: Full=50S ribosomal protein L14; chromosome CDS554726 369 - 0.344173
rplO 50S ribosomal protein L15RecName: Full=50S ribosomal protein L15; chromosome CDS551024 435 - 0.328736
rplP 50S ribosomal protein L16RecName: Full=50S ribosomal protein L16; chromosome CDS555657 411 - 0.36253
rplQ 50S ribosomal protein L17RecName: Full=50S ribosomal protein L17; chromosome CDS546594 393 - 0.305344
rplR 50S ribosomal protein L18RecName: Full=50S ribosomal protein L18; chromosome CDS552171 369 - 0.325203
rplS 50S ribosomal protein L19RecName: Full=50S ribosomal protein L19; chromosome CDS434945 348 + 0.301724
rplT 50S ribosomal protein L20RecName: Full=50S ribosomal protein L20; chromosome CDS133258 357 + 0.322129
rplU 50S ribosomal protein L21RecName: Full=50S ribosomal protein L21; chromosome CDS427642 327 + 0.256881
rplV 50S ribosomal protein L22RecName: Full=50S ribosomal protein L22; chromosome CDS556808 333 - 0.336336
rplW 50S ribosomal protein L23RecName: Full=50S ribosomal protein L23; chromosome CDS558310 303 - 0.254125
rplX 50S ribosomal protein L24RecName: Full=50S ribosomal protein L24; chromosome CDS554386 315 - 0.260317
rplY 50S ribosomal protein L25RecName: Full=50S ribosomal protein L25; chromosome CDS144748 288 + 0.267361
rpmA 50S ribosomal protein L27RecName: Full=50S ribosomal protein L27; chromosome CDS427973 255 + 0.32549
rpmB 50S ribosomal protein L28RecName: Full=50S ribosomal protein L28; chromosome CDS87332 228 - 0.27193
rpmC 50S ribosomal protein L29RecName: Full=50S ribosomal protein L29; chromosome CDS555460 198 - 0.277778
rpmD 50S ribosomal protein L30RecName: Full=50S ribosomal protein L30; chromosome CDS551463 180 - 0.277778
rpmE 50S ribosomal protein L31RecName: Full=50S ribosomal protein L31; chromosome CDS611349 219 - 0.283105
rpmF 50S ribosomal protein L32RecName: Full=50S ribosomal protein L32; chromosome CDS383329 165 + 0.309091
rpmG 50S ribosomal protein L33RecName: Full=50S ribosomal protein L33; chromosome CDS87154 168 - 0.255952
rpmH 50S ribosomal protein L34RecName: Full=50S ribosomal protein L34; chromosome CDS14369 144 + 0.319444
rpmI 50S ribosomal protein L35RecName: Full=50S ribosomal protein L35; chromosome CDS133018 198 + 0.287879
rpmJ 50S ribosomal protein L36RecName: Full=50S ribosomal protein L36; chromosome CDS549558 117 - 0.316239
rpsA 30S ribosomal protein S1RecName: Full=30S ribosomal protein S1; chromosome CDS341201 1677 - 0.304114
rpsB 30S ribosomal protein S2RecName: Full=30S ribosomal protein S2; chromosome CDS255574 735 + 0.287075
rpsC 30S ribosomal protein S3RecName: Full=30S ribosomal protein S3; chromosome CDS556088 702 - 0.347578
rpsD 30S ribosomal protein S4RecName: Full=30S ribosomal protein S4; chromosome CDS548049 621 - 0.304348
rpsE 30S ribosomal protein S5RecName: Full=30S ribosomal protein S5; chromosome CDS551652 504 - 0.347222
rpsF 30S ribosomal protein S6RecName: Full=30S ribosomal protein S6; chromosome CDS594992 342 - 0.269006
rpsG 30S ribosomal protein S7RecName: Full=30S ribosomal protein S7; chromosome CDS564010 471 - 0.352442
rpsH 30S ribosomal protein S8RecName: Full=30S ribosomal protein S8; chromosome CDS553088 393 - 0.312977
rpsI 30S ribosomal protein S9RecName: Full=30S ribosomal protein S9; chromosome CDS429451 393 - 0.351145
rpsJ 30S ribosomal protein S10RecName: Full=30S ribosomal protein S10; chromosome CDS559892 312 - 0.36859
rpsK 30S ribosomal protein S11RecName: Full=30S ribosomal protein S11; chromosome CDS548695 396 - 0.368687
rpsL 30S ribosomal protein S12RecName: Full=30S ribosomal protein S12; chromosome CDS564522 375 - 0.357333
rpsM 30S ribosomal protein S13RecName: Full=30S ribosomal protein S13; chromosome CDS549108 357 - 0.308123
rpsN 30S ribosomal protein S14RecName: Full=30S ribosomal protein S14; chromosome CDS553509 306 - 0.356209
rpsO 30S ribosomal protein S15RecName: Full=30S ribosomal protein S15; chromosome CDS413873 270 - 0.244444
rpsP 30S ribosomal protein S16RecName: Full=30S ribosomal protein S16; chromosome CDS433347 240 + 0.3125
rpsQ 30S ribosomal protein S17RecName: Full=30S ribosomal protein S17; chromosome CDS555209 252 - 0.293651
rpsR 30S ribosomal protein S18RecName: Full=30S ribosomal protein S18; chromosome CDS594639 228 - 0.315789
rpsS 30S ribosomal protein S19RecName: Full=30S ribosomal protein S19; chromosome CDS557176 279 - 0.293907
rpsT 30S ribosomal protein S20RecName: Full=30S ribosomal protein S20; chromosome CDS160640 270 + 0.27037
rpsU 30S ribosomal protein S21RecName: Full=30S ribosomal protein S21; chromosome CDS62755 216 - 0.37963
serS seryl-tRNA synthetaseRecName: Full=Serine--tRNA ligase; EC=6.1.1.11; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase; chromosome CDS346190 1284 - 0.278037
smpA small protein ARecName: Full=Outer membrane protein assembly factor BamE; Flags: Precursor; chromosome CDS202263 309 + 0.203883
tgt queuine tRNA-ribosyltransferaseRecName: Full=Queuine tRNA-ribosyltransferase; EC=2.4.2.29; AltName: Full=Guanine insertion enzyme; AltName: Full=tRNA-guanine transglycosylase; chromosome CDS138664 1113 + 0.267745
thrS threonyl-tRNA synthetaseRecName: Full=Threonine--tRNA ligase; EC=6.1.1.3; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS; chromosome CDS130460 1929 + 0.271125
trmD tRNA (guanine-n1)-methyltransferaseRecName: Full=tRNA (guanine-N(1)-)-methyltransferase; EC=2.1.1.228; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; chromosome CDS434133 714 + 0.295518
trmU tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferaseRecName: Full=tRNA-specific 2-thiouridylase MnmA; EC=2.8.1.-; chromosome CDS286436 1179 + 0.251908
trpS tryptophanyl-tRNA synthetaseRecName: Full=Tryptophan--tRNA ligase; EC=6.1.1.2; AltName: Full=Tryptophanyl-tRNA synthetase; Short=TrpRS; chromosome CDS570134 1008 - 0.262897
truA pseudouridylate synthase IRecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; chromosome CDS215390 801 + 0.29588
truB tRNA pseudouridine 55 synthaseRecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.25; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase; chromosome CDS414247 939 - 0.268371
tsf elongation factor TsRecName: Full=Elongation factor Ts; Short=EF-Ts; chromosome CDS256385 807 + 0.288724
tufB elongation factor EF-TuRecName: Full=Elongation factor Tu; Short=EF-Tu; chromosome CDS560535 1272 - 0.349057
tyrS tyrosyl-tRNA synthetaseRecName: Full=Tyrosine--tRNA ligase; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase; Short=TyrRS; chromosome CDS125936 1269 + 0.263199
valS valyl-tRNA synthetaseRecName: Full=Valine--tRNA ligase; EC=6.1.1.9; AltName: Full=Valyl-tRNA synthetase; Short=ValRS; chromosome CDS401601 2868 - 0.251743
ychF GTP-binding proteinRecName: Full=Ribosome-binding ATPase YchF; chromosome CDS205836 1089 + 0.251607
yciL hypothetical proteinRecName: Full=Ribosomal large subunit pseudouridine synthase B; EC=5.4.99.22; AltName: Full=23S rRNA pseudouridine(2605) synthase; AltName: Full=rRNA pseudouridylate synthase B; AltName: Full=rRNA-uridine isomerase B; chromosome CDS307521 753 + 0.26162
yfhC hypothetical protein yfhCRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS280870 486 + 0.286008
yhaR hypothetical proteinRecName: Full=RutC family protein BU371; chromosome CDS408889 387 + 0.235142
yjeA hypothetical lysyl-tRNA synthetase homologRecName: Full=Elongation factor P--(R)-beta-lysine ligase; Short=EF-P--(R)-beta-lysine ligase; EC=6.3.1.-; AltName: Full=EF-P post-translational modification enzyme A; AltName: Full=EF-P-lysine lysyltransferase; chromosome CDS615562 975 - 0.253333
yjjT hypothetical proteinRecName: Full=Ribosomal RNA small subunit methyltransferase C; EC=2.1.1.172; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RsmC; chromosome CDS363663 843 + 0.250297
yleA hypothetical proteinRecName: Full=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; EC=2.8.4.3; AltName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase; chromosome CDS481012 1320 + 0.273485
yrdC hypothetical proteinRecName: Full=Threonylcarbamoyl-AMP synthase; Short=TC-AMP synthase; EC=2.7.7.87; AltName: Full=L-threonylcarbamoyladenylate synthase; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC; AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaC; chromosome CDS543652 528 - 0.276515