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2024-05-03 20:11:13

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Nocardia farcinica IFM 10152, IFM 10152

Number of genes found: 205

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Nocardia farcinica IFM 10152, IFM 10152
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA nfa26520 putative polypeptide deformylasechromosome CDS2817799 573 + 0.710297
NA nfa32750 putative endoribonucleasechromosome CDS3474201 414 - 0.714976
NA nfa45730 putative ATP-dependent RNA helicasechromosome CDS4755923 3447 + 0.741514
NA nfa42710 hypothetical proteinchromosome CDS4424332 1410 + 0.643972
NA nfa8060 hypothetical proteinchromosome CDS874347 432 - 0.738426
NA nfa6670 putative histidine kinasechromosome CDS689215 3807 + 0.742579
NA nfa25160 putative RNA helicasechromosome CDS2680563 1557 - 0.771997
NA nfa39470 hypothetical proteinchromosome CDS4144903 828 - 0.640097
NA nfa28900 putative acetyltransferasechromosome CDS3074468 516 + 0.71124
NA nfa33470 hypothetical proteinchromosome CDS3547801 537 - 0.692737
NA nfa25360 putative RNA methyltransferasechromosome CDS2699578 1158 - 0.753022
NA nfa6510 putative ribosomal RNA methyltransferasechromosome CDS673402 804 + 0.731343
NA nfa2690 putative aminoacyl-tRNA synthetasechromosome CDS276415 936 - 0.729701
NA nfa46980 hypothetical proteinchromosome CDS4907514 651 + 0.671275
NA nfa53010 putative polypeptide deformylasechromosome CDS5602211 591 + 0.707276
NA nfa31820 hypothetical proteinchromosome CDS3376111 834 - 0.713429
NA nfa55940 hypothetical proteinchromosome CDS5933749 396 - 0.714646
NA nfa3440 hypothetical proteinchromosome CDS355235 471 + 0.70276
NA nfa34860 hypothetical proteinchromosome CDS3697080 936 + 0.737179
NA nfa10550 putative methyltransferasechromosome CDS1165619 873 + 0.725086
NA nfa26060 putative DNA-binding proteinchromosome CDS2774442 864 + 0.706019
NA nfa37740 hypothetical proteinchromosome CDS3990898 1572 + 0.749364
NA nfa39710 hypothetical proteinchromosome CDS4160771 468 - 0.66453
NA nfa40070 hypothetical proteinchromosome CDS4173433 426 + 0.678404
NA nfa7960 putative methionine aminopeptidasechromosome CDS860331 801 + 0.716604
NA nfa38480 putative aminoglycoside 3'-O-phosphotransferasechromosome CDS4066002 792 - 0.736111
NA nfa2310 putative endoribonucleasechromosome CDS242535 393 - 0.737913
NA nfa46180 putative alkane-1-monooxygenasechromosome CDS4804963 1242 - 0.677939
NA nfa2560 putative transcriptional regulatorchromosome CDS258880 960 - 0.71875
NA nfa54860 putative membrane proteinchromosome CDS5812102 3381 + 0.707483
NA nfa2270 putative acetyltransferasechromosome CDS238494 789 - 0.695817
NA nfa16790 putative DNA-binding proteinchromosome CDS1832730 927 + 0.660194
NA nfa16730 hypothetical proteinchromosome CDS1825080 2439 + 0.750308
NA nfa9560 hypothetical proteinchromosome CDS1056948 342 - 0.69883
NA nfa18670 hypothetical proteinchromosome CDS2038373 411 - 0.671533
NA nfa9010 hypothetical proteinchromosome CDS1002992 639 - 0.71518
NA nfa6830 putative RNA pseudouridylate synthasechromosome CDS708732 783 - 0.722861
NA nfa18760 putative amidasechromosome CDS2050045 1491 - 0.736418
NA nfa42520 hypothetical proteinchromosome CDS4405726 873 + 0.721649
NA nfa15000 hypothetical proteinchromosome CDS1667680 609 + 0.702791
NA nfa17870 putative RNA pseudouridine synthasechromosome CDS1948772 927 - 0.718447
NA nfa47850 putative GTP-binding proteinchromosome CDS4994742 1080 - 0.673148
NA nfa48380 hypothetical proteinchromosome CDS5052597 1152 - 0.722222
NA nfa35530 putative acetyltransferasechromosome CDS3762903 468 - 0.74359
NA nfa19090 hypothetical proteinchromosome CDS2085732 777 + 0.75547
NA nfa10560 hypothetical proteinchromosome CDS1166534 705 + 0.720567
NA nfa34330 putative methyltransferasechromosome CDS3637359 792 + 0.758838
NA nfa8110 hypothetical proteinchromosome CDS878817 21579 + 0.74832
NA nfa20760 putative ScnA homologchromosome CDS2250705 303 - 0.70297
NA nfa11450 hypothetical proteinchromosome CDS1271427 651 + 0.766513
NA nfa30050 putative cytidine/deoxycytidylate deaminasechromosome CDS3186265 609 + 0.748768
NA nfa31320 putative methionine aminopeptidasechromosome CDS3327066 771 - 0.725032
NA nfa54480 hypothetical proteinchromosome CDS5765570 495 - 0.705051
NA nfa6060 putative dihydrouridine synthasechromosome CDS625846 1149 - 0.718886
NA nfa12420 putative endoribonucleasechromosome CDS1382043 393 + 0.687023
NA nfa37440 putative RNA methyltransferasechromosome CDS3963275 1293 - 0.781129
NA nfa27210 putative ribosomal RNA adenine N-6-methyltransferasechromosome CDS2890168 810 - 0.739506
NA nfa27360 putative acetyltransferasechromosome CDS2902725 525 - 0.657143
NA nfa13520 hypothetical proteinchromosome CDS1515888 3438 + 0.739674
NA nfa36540 hypothetical proteinchromosome CDS3868772 549 - 0.595628
NA nfa22180 putative amidasechromosome CDS2392559 1617 - 0.76376
NA nfa26270 putative endoribonucleasechromosome CDS2797690 402 + 0.70398
NA nfa9200 putative ribosomal RNA methyltransferasechromosome CDS1022385 465 - 0.696774
NA nfa35830 putative acetyltransferasechromosome CDS3794221 549 + 0.715847
NA nfa46970 hypothetical proteinchromosome CDS4907198 408 + 0.710784
NA nfa48950 putative peptide chain release factorchromosome CDS5108360 1641 + 0.708105
NA nfa44690 putative deaminasechromosome CDS4636400 510 + 0.747059
NA nfa20110 putative pseudouridine synthasechromosome CDS2188204 714 + 0.707283
NA pnf1670 hypothetical proteinpNF1 CDS77152 783 + 0.704981
NA nfa19170 putative ribosomal RNA methyltransferasechromosome CDS2093604 840 + 0.752381
NA nfa56560 putative tRNA nucleotidyltransferasechromosome CDS5995441 1458 - 0.700274
NA nfa53870 putative RNA methyltransferasechromosome CDS5693842 708 - 0.718927
NA nfa2380 putative cytidine/deoxycytidylate deaminasechromosome CDS247724 480 + 0.758333
NA nfa7490 putative RNA pseudouridylate synthasechromosome CDS807653 930 - 0.701075
NA nfa4390 putative tRNA/rRNA methyltransferasechromosome CDS453756 975 + 0.731282
NA nfa38300 putative ribosomal RNA methyltransferasechromosome CDS4050036 837 - 0.710872
NA nfa14780 hypothetical proteinchromosome CDS1656103 498 + 0.682731
NA nfa12060 putative amidasechromosome CDS1336750 1419 + 0.730796
NA nfa46360 putative mannose-1-phosphate guanyltransferasechromosome CDS4825381 1080 - 0.725926
NA nfa11700 putative amidasechromosome CDS1296793 1617 - 0.753865
NA nfa22620 hypothetical proteinchromosome CDS2441161 336 - 0.717262
NA nfa48550 putative methyltransferasechromosome CDS5067934 657 - 0.750381
NA nfa28390 putative amidasechromosome CDS3024232 1236 - 0.7589
NA nfa12050 hypothetical proteinchromosome CDS1336549 198 + 0.727273
NA pnf1930 hypothetical proteinpNF1 CDS111422 411 - 0.708029
NA nfa42670 putative tRNA methyl transferasechromosome CDS4420416 1119 - 0.743521
NA nfa38350 hypothetical proteinchromosome CDS4055012 1512 - 0.708333
NA nfa28320 putative amidasechromosome CDS3019190 1440 - 0.740278
NA nfa46070 hypothetical proteinchromosome CDS4794246 705 - 0.673759
NA nfa33260 putative amidasechromosome CDS3527607 1410 + 0.721986
NA nfa18350 hypothetical proteinchromosome CDS2006474 534 + 0.720974
alaS nfa36440 putative alanyl-tRNA synthetasechromosome CDS3854972 2667 - 0.691789
argS nfa10470 putative arginyl-tRNA synthetasechromosome CDS1154744 1659 + 0.697408
aspS nfa36490 putative aspartyl-tRNA synthetasechromosome CDS3863075 1794 - 0.700669
cysS nfa4380 putative cysteinyl-tRNA synthetasechromosome CDS452353 1404 + 0.702279
cysS2 nfa29340 putative cysteinyl-tRNA synthetasechromosome CDS3115364 1239 + 0.712672
deaD nfa46830 putative ATP-dependent RNA helicasechromosome CDS4883259 1809 + 0.699281
def nfa36090 putative polypeptide deformylasechromosome CDS3819820 558 - 0.704301
efp nfa36320 putative elongation factor Pchromosome CDS3843135 564 - 0.656028
fmt nfa36080 putative methionyl-tRNA formyltransferasechromosome CDS3818897 924 - 0.725108
frr nfa41280 putative ribosome recycling factorchromosome CDS4276330 558 - 0.645161
fusA nfa50760 putative translation elongation factor Gchromosome CDS5375158 2103 - 0.637661
fusA2 nfa16700 putative translation elongation factor Gchromosome CDS1821683 2208 - 0.730525
gatA nfa42580 putative glutamyl-tRNA amidotransferase subunit Achromosome CDS4411630 1473 - 0.716225
gatB nfa42380 putative glutamyl-tRNA amidotransferase subunit Bchromosome CDS4386629 1512 - 0.695767
gatC nfa42590 putative glutamyl-tRNA amidotransferase subunit Cchromosome CDS4413099 300 - 0.72
gltX nfa42160 putative glutamyl-tRNA synthetasechromosome CDS4365798 1470 - 0.682313
glyS nfa14590 putative glycyl-tRNA synthetasechromosome CDS1639864 1401 + 0.672377
hisS nfa36640 putative histidyl-tRNA synthetasechromosome CDS3879518 1269 - 0.714736
ileS nfa17760 putative isoleucyl-tRNA synthetasechromosome CDS1932119 3129 + 0.680089
infA nfa8320 putative translation initiation factor IF-1chromosome CDS927972 222 + 0.617117
infB nfa40670 putative translation initiation factor IF-2chromosome CDS4214043 2943 - 0.729867
infC nfa19140 putative translation initiation factor IF-3chromosome CDS2092347 537 + 0.672253
ksgA nfa49030 putative ribosomal RNA adenine dimethyltransferasechromosome CDS5117444 882 - 0.744898
leuS nfa55240 putative leucyl-tRNA synthetasechromosome CDS5849497 2853 + 0.70312
lysS nfa4110 putative lysyl-tRNA synthetasechromosome CDS429563 1467 + 0.65985
lysS2 nfa1030 putative lysyl-tRNA synthetasechromosome CDS94188 3186 - 0.714061
map nfa40890 putative methionine aminopeptidasechromosome CDS4241566 864 - 0.672454
metS nfa49060 putative methionyl-tRNA synthetasechromosome CDS5120677 1557 + 0.673089
miaA nfa38310 putative delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4050869 942 - 0.730361
nbtH nfa7620 putative N6-hydroxylysine acetyltransferasechromosome CDS821524 681 - 0.712188
pheS nfa19180 putative phenylalanyl-tRNA synthetase alpha subunitchromosome CDS2094609 1029 + 0.716229
pnp nfa38870 putative guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferasechromosome CDS4099851 2295 - 0.699782
prfA nfa10540 putative peptide chain release factor 1chromosome CDS1164493 1071 + 0.704015
prfB nfa44880 putative peptide chain release factor 2chromosome CDS4651237 1119 - 0.675603
proS nfa40730 putative prolyl-tRNA synthetasechromosome CDS4222401 1758 - 0.704778
pth nfa48930 putative peptidyl-tRNA hydrolasechromosome CDS5106815 582 - 0.707904
rbfA nfa40650 putative ribosome-binding factor Achromosome CDS4213187 444 - 0.693694
rimJ nfa49510 putative ribosomal-protein-alanine N-acetyltransferasechromosome CDS5169535 651 - 0.726574
rimM nfa41550 putative 16S rRNA processing proteinchromosome CDS4303362 525 - 0.702857
rnd nfa37400 putative RNase Dchromosome CDS3958857 1275 + 0.759216
rnpA nfa56720 putative RNase P componentchromosome CDS6019988 471 - 0.70913
rph nfa10950 putative RNase PHchromosome CDS1210984 774 + 0.715762
rplA nfa51140 putative ribosomal protein L1chromosome CDS5416525 714 - 0.697479
rplB nfa7360 putative ribosomal protein L2chromosome CDS796435 837 + 0.691756
rplC nfa7330 putative ribosomal protein L3chromosome CDS794745 666 + 0.678679
rplD nfa7340 putative ribosomal protein L4chromosome CDS795407 693 + 0.683983
rplE nfa7760 putative ribosomal protein L5chromosome CDS846715 564 + 0.632979
rplF nfa7890 putative ribosomal protein L6chromosome CDS856030 540 + 0.653704
rplI nfa55750 putative ribosomal protein L9chromosome CDS5908734 459 + 0.684096
rplJ nfa51120 putative ribosomal protein L10chromosome CDS5413880 531 - 0.687382
rplK nfa51150 putative ribosomal protein L11chromosome CDS5417308 435 - 0.650575
rplL nfa51110 putative ribosomal protein L7/L12chromosome CDS5413448 381 - 0.661417
rplM nfa8660 putative ribosomal protein L13chromosome CDS967324 444 + 0.646396
rplN nfa7740 putative ribosomal protein L14chromosome CDS846029 369 + 0.653117
rplO nfa7930 putative ribosomal protein L15chromosome CDS857849 444 + 0.686937
rplP nfa7400 putative ribosomal protein L16chromosome CDS798774 417 + 0.642686
rplQ nfa8380 putative ribosomal protein L17chromosome CDS931395 537 + 0.698324
rplR nfa7900 putative ribosomal protein L18chromosome CDS856572 408 + 0.688725
rplS nfa41470 putative ribosomal protein L19chromosome CDS4293092 342 - 0.637427
rplT nfa19160 putative ribosomal protein L20chromosome CDS2093217 381 + 0.692913
rplU nfa13530 putative ribosomal protein L21chromosome CDS1519607 312 + 0.644231
rplV nfa7380 putative ribosomal protein L22chromosome CDS797565 402 + 0.701493
rplW nfa7350 putative ribosomal protein L23chromosome CDS796096 306 + 0.624183
rplX nfa7750 putative ribosomal protein L24chromosome CDS846399 315 + 0.650794
rplY nfa48940 putative ribosomal protein L25chromosome CDS5107404 603 - 0.703151
rpmA nfa13540 putative ribosomal protein L27chromosome CDS1519941 267 + 0.707865
rpmB nfa49750 putative ribosomal protein L28chromosome CDS5189418 237 + 0.687764
rpmB2 nfa41960 putative ribosomal protein L28chromosome CDS4347103 192 + 0.692708
rpmC nfa7410 putative ribosomal protein L29chromosome CDS799190 240 + 0.633333
rpmD nfa7920 putative ribosomal protein L30chromosome CDS857668 180 + 0.622222
rpmE nfa49730 putative ribosomal protein L31chromosome CDS5187722 267 - 0.689139
rpmE2 nfa10530 putative ribosomal protein L31chromosome CDS1164178 231 + 0.649351
rpmF2 nfa41850 putative ribosomal protein L32chromosome CDS4333614 183 - 0.704918
rpmG nfa49760 putative ribosomal protein L33chromosome CDS5189667 171 + 0.649123
rpmG2 nfa51190 putative ribosomal protein L33chromosome CDS5420730 171 - 0.625731
rpmH nfa56730 putative ribosomal protein L34chromosome CDS6020480 144 - 0.715278
rpmI nfa19150 putative ribosomal protein L35chromosome CDS2092942 195 + 0.65641
rpmJ nfa8330 putative ribosomal protein L36chromosome CDS928349 114 + 0.622807
rpsA nfa18970 putative ribosomal protein S1chromosome CDS2071189 1464 + 0.66735
rpsB nfa41310 putative ribosomal protein S2chromosome CDS4278885 858 - 0.677156
rpsC nfa7390 putative ribosomal protein S3chromosome CDS797967 804 + 0.686567
rpsD nfa8360 putative ribosomal protein S4chromosome CDS929498 606 + 0.671617
rpsE nfa7910 putative ribosomal protein S5chromosome CDS857011 657 + 0.701674
rpsF nfa55720 putative ribosomal protein S6chromosome CDS5907442 288 + 0.642361
rpsG nfa50770 putative ribosomal protein S7chromosome CDS5377426 471 - 0.683652
rpsH nfa7880 putative ribosomal protein S8chromosome CDS855617 399 + 0.654135
rpsI nfa8670 putative ribosomal protein S9chromosome CDS967764 504 + 0.704365
rpsJ nfa7320 putative ribosomal protein S10chromosome CDS794425 306 + 0.643791
rpsK nfa8350 putative ribosomal protein S11chromosome CDS929062 414 + 0.678744
rpsL nfa50780 putative ribosomal protein S12chromosome CDS5377898 375 - 0.661333
rpsM nfa8340 putative ribosomal protein S13chromosome CDS928683 372 + 0.655914
rpsN nfa7770 putative ribosomal protein S14chromosome CDS847282 186 + 0.677419
rpsN2 nfa49770 putative ribosomal protein S14chromosome CDS5189838 306 + 0.689542
rpsO nfa38880 putative ribosomal protein S15chromosome CDS4102610 270 - 0.67037
rpsP nfa41570 putative ribosomal protein S16chromosome CDS4304144 435 - 0.689655
rpsQ nfa7420 putative ribosomal protein S17chromosome CDS799426 270 + 0.644444
rpsR nfa55740 putative ribosomal protein S18chromosome CDS5908465 252 + 0.630952
rpsR2 nfa49780 putative ribosomal protein S18chromosome CDS5190176 255 + 0.67451
rpsS nfa7370 putative ribosomal protein S19chromosome CDS797287 282 + 0.613475
rpsT nfa13960 putative ribosomal protein S20chromosome CDS1568714 261 - 0.670498
serS nfa1400 putative seryl-tRNA synthasechromosome CDS127645 1263 + 0.707838
sun nfa36070 putative RNA-binding Sun proteinchromosome CDS3817017 1884 - 0.764862
tgt nfa2650 putative tRNA-guanine transglycosylasechromosome CDS272952 1260 + 0.686508
thrS nfa37120 putative threonyl-tRNA synthetasechromosome CDS3925662 2112 - 0.687973
thrS2 nfa13810 putative threonyl-tRNA synthetasechromosome CDS1545652 1260 - 0.700794
tlyA nfa19960 putative cytotoxin/hemolysinchromosome CDS2172201 822 + 0.723844
trmD nfa41540 putative tRNA methyltransferasechromosome CDS4302656 696 - 0.708333
trpS nfa9360 putative tryptophanyl-tRNA synthetasechromosome CDS1038042 1032 + 0.66376
truA nfa8390 putative tRNA pseudouridine synthasechromosome CDS932027 774 + 0.72739
truB nfa40530 putative tRNA pseudouridine synthasechromosome CDS4199619 921 - 0.738328
tsf nfa41300 putative elongation factor EF-Tschromosome CDS4277952 828 - 0.700483
tufB nfa50750 putative translation elongation factor TUchromosome CDS5373828 1248 - 0.653846
tyrS nfa19910 putative tyrosyl-tRNA synthetasechromosome CDS2161897 1290 + 0.707752
valS nfa13480 putative valyl-tRNA synthetasechromosome CDS1510361 2682 + 0.699478