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2024-05-01 14:56:50

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Nitrosomonas europaea ATCC 19718, ATCC 19718

Number of genes found: 155

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Nitrosomonas europaea ATCC 19718, ATCC 19718
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA NE0526 Uncharacterized protein family UPF0044chromosome CDS562796 381 - 0.493438
NA NE0413 Ribosomal protein L5:Mitochondrial ribosomal protein L5chromosome CDS459033 540 + 0.372222
NA NE0874 Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 familychromosome CDS953350 1014 + 0.524655
NA NE0190 ADP-glucose pyrophosphorylasechromosome CDS228266 720 - 0.548611
NA NE0493 hypothetical proteinchromosome CDS533980 318 - 0.509434
NA NE0437 Cytidine and deoxycytidylate deaminase zinc-binding regionchromosome CDS474482 504 + 0.553571
NA NE1953 rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1chromosome CDS2110218 741 - 0.553306
NA NE0420 Ribosomal protein L15chromosome CDS462027 462 + 0.398268
NA NE0946 SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein familychromosome CDS1031893 1020 + 0.444118
NA NE0427 Ribosomal protein L17chromosome CDS466675 393 + 0.414758
NA NE0404 Ribosomal protein L2chromosome CDS455123 837 + 0.431302
NA NE0807 conserved hypothetical proteinchromosome CDS876438 456 - 0.497807
NA NE0691 tRNA pseudouridine synthasechromosome CDS751240 819 + 0.487179
NA NE1823 GTP1/OBG family:Conserved hypothetical protein 92chromosome CDS1970502 1092 - 0.526557
NA NE2270 hypothetical proteinchromosome CDS2460540 1035 - 0.437681
NA NE1972 sun; rRNA methylasechromosome CDS2129034 1281 + 0.534738
NA NE1563 Protein of unknown function DUF79chromosome CDS1695378 291 + 0.32646
NA NE2291 cAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamilychromosome CDS2485723 765 - 0.500654
NA NE1672 RimMchromosome CDS1807789 510 + 0.511765
NA NE2302 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2chromosome CDS2495699 465 + 0.569892
NA NE2171 Formyl transferase N-terminuschromosome CDS2359934 786 - 0.424936
NA NE2252 aspartyl-tRNA synthetasechromosome CDS2442464 1782 + 0.517957
NA NE0410 Ribosomal protein S17chromosome CDS457979 255 + 0.380392
NA NE0763 tRNA pseudouridine synthase Bchromosome CDS828817 927 + 0.474649
NA NE0761 putative translation initiation factor proteinchromosome CDS825643 2670 + 0.510487
NA NE0351 putative tRNA/rRNA methyltransferasechromosome CDS394569 783 + 0.528736
NA NE0681 putative transmembrane proteinchromosome CDS740422 570 - 0.519298
NA NE0436 adenine specific methylase, HemK familychromosome CDS473497 939 - 0.533546
NA NE2498 hypothetical proteinchromosome CDS2729205 807 - 0.491945
NA NE1725 SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein familychromosome CDS1861300 633 + 0.532385
NA NE0775 tRNA/rRNA methyltransferase (SpoU)chromosome CDS840997 834 + 0.492806
NA NE1851 YER057c/YjgF/UK114 familychromosome CDS1999916 390 - 0.55641
NA NE0047 Cytidine and deoxycytidylate deaminase zinc-binding regionchromosome CDS59059 582 + 0.601375
NA NE0061 Sigma 54 modulation protein / S30EA ribosomal proteinchromosome CDS81151 336 - 0.386905
NA NE1584 hypothetical proteinchromosome CDS1714296 297 + 0.400673
NA NE1755 Formylmethionine deformylasechromosome CDS1893425 531 + 0.549906
NA NE0085 SAM (and some other nucleotide) binding motif:NOL1/NOP2/sun f...chromosome CDS103819 1260 - 0.511905
NA NE0025 Metallo-beta-lactamase superfamilychromosome CDS31721 1407 - 0.517413
NA NE0435 possible pseudouridylate synthase family 1chromosome CDS472644 879 + 0.541524
NA NE0414 Ribosomal protein S14chromosome CDS459583 306 + 0.415033
NA NE0476 Protein of unknown function DUF79chromosome CDS516603 255 + 0.466667
NA NE1457 Ribonucleases G and Echromosome CDS1590529 2562 + 0.52381
NA NE1431 t-RNA synthetase, class Ibchromosome CDS1559381 1230 + 0.502439
NA NE0005 possible 16S pseudouridylate synthasechromosome CDS5907 732 + 0.502732
NA NE2335 Fe-S oxidoreductases family 1chromosome CDS2534571 1332 - 0.453453
NA NE1912 hemK_fam: modification methylasechromosome CDS2064788 870 - 0.513793
NA NE0527 FtsJ cell division proteinchromosome CDS563220 621 + 0.494364
NA NE1807 putative ATP-dependent RNA helicase proteinchromosome CDS1954496 1374 + 0.53639
NA NE2565 S4 domainchromosome CDS2804085 411 - 0.557178
NA NE0411 Ribosomal protein L14b/L23e familychromosome CDS458315 369 + 0.425474
alaS NE1930 Alanyl-tRNA synthetase:DHHA1 domainchromosome CDS2084262 2592 - 0.51929
argS NE0364 Arginyl-tRNA synthetasechromosome CDS407590 1761 + 0.511641
cafA NE0355 S1 RNA binding domain:Ribonuclease E and Gchromosome CDS397628 1446 - 0.52213
cca NE1614 Poly A polymerase family:HD domainchromosome CDS1740272 1239 - 0.564972
cysS NE0043 Cysteinyl-tRNA synthetasechromosome CDS54841 1398 + 0.501431
def NE1970 Formylmethionine deformylasechromosome CDS2127444 558 + 0.517921
efp NE0897 Elongation factor P (EF-P)chromosome CDS976038 558 - 0.442652
fmt NE1971 Formyl transferase N-terminus:Methionyl-tRNA formyltransferasechromosome CDS2128063 975 + 0.548718
fusA1 NE2053 Translation elongation and release factors (GTPases)chromosome CDS2229358 2091 - 0.450502
gatA NE2072 Amidase:Glutamyl-tRNA(Gln) amidotransferase A subunitchromosome CDS2250380 1461 + 0.512663
gatB NE2073 gatB: glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS2251896 1437 + 0.507307
gatC NE2071 Glu-tRNAGln amidotransferase C subunitchromosome CDS2250030 288 + 0.451389
glnS NE2356 Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnSchromosome CDS2560102 1671 + 0.505685
glnS NE2363 Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnSchromosome CDS2567612 1671 + 0.505685
gltX NE1624 gltX; glutamate-tRNA synthetase (catalytic subunit)(sye protein)chromosome CDS1754414 1392 - 0.533046
glyQ NE1187 Glycyl-tRNA synthetase, alpha subunitchromosome CDS1286268 978 - 0.552147
glyS NE1186 Glycyl-tRNA synthetase, beta subunitchromosome CDS1284124 2148 - 0.549348
gshB NE1295 gshB; glutathione synthetase proteinchromosome CDS1414596 963 + 0.548287
hisS NE0150 hisS; histidine-tRNA synthetase proteinchromosome CDS174183 1233 + 0.530414
ileS NE1149 t-RNA synthetase, class Ia:Isoleucyl-tRNA synthetasechromosome CDS1245592 2820 - 0.531915
infA NE0422 S1 RNA binding domain:Translation initiation factor IF-1chromosome CDS463811 219 + 0.378995
infC NE0957 Initiation factor 3chromosome CDS1041621 495 - 0.436364
ksgA NE0884 ksgA; dimethyladenosine transferasechromosome CDS966331 774 + 0.496124
leuS NE1139 t-RNA synthetase, class Ia:Leucyl-tRNA synthetasechromosome CDS1234324 2610 - 0.531801
ligT NE1401 putative 2'-5' RNA ligasechromosome CDS1530806 576 - 0.555556
lysS NE2355 lysS; putative lysyl-tRNA synthetase proteinchromosome CDS2558314 1509 - 0.499669
map NE0275 Methionine aminopeptidasechromosome CDS305311 819 + 0.514042
miaA NE1976 tRNA isopentenyltransferasechromosome CDS2135084 954 - 0.532495
omlA NE0615 possible outer membrane lipoprotein OmlAchromosome CDS668246 495 - 0.472727
pcnB NE0069 Poly A polymerase familychromosome CDS88660 1383 + 0.537961
pheS NE0954 pheS; phenylalanyl-tRNA synthetase, alpha-subunitchromosome CDS1039822 1038 - 0.447977
pnp NE0172 pnp; polyribonucleotide nucleotidyltransferase proteinchromosome CDS210838 2127 - 0.497884
prfA NE1913 prfA: peptide chain release factor 1chromosome CDS2065654 1080 - 0.523148
prfB NE1229 Peptide chain release factor 2chromosome CDS1337349 1044 - 0.519157
prfC NE2481 prfC; peptide chain release factor RF-3chromosome CDS2707230 1608 + 0.536692
prmA NE0654 prmA; putative ribosomal protein L11 methyltransferasechromosome CDS709274 942 + 0.53397
proS NE1317 Prolyl-tRNA synthetasechromosome CDS1436837 1707 + 0.51611
pth NE1824 Peptidyl-tRNA hydrolasechromosome CDS1971668 588 - 0.559524
rbfA NE0762 Ribosome-binding factor Achromosome CDS828363 354 + 0.49435
rhlE NE2040 rhlE; ATP-dependent RNA helicase RhlEchromosome CDS2209232 1497 - 0.504342
rluC NE1456 rluC; ribosomal large subunit pseudouridine synthase Cchromosome CDS1589056 1032 - 0.484496
rluD NE0505 rluD; ribosomal large subunit pseudouridine synthase Dchromosome CDS543547 1035 - 0.550725
rnpA NE0389 Bacterial ribonuclease P proteinchromosome CDS444329 360 - 0.491667
rph NE0276 3' exoribonuclease familychromosome CDS306197 726 + 0.541322
rplA NE2049 Ribosomal protein L1chromosome CDS2225768 705 - 0.432624
rplC NE0401 Ribosomal protein L3chromosome CDS453506 648 + 0.410494
rplD NE0402 Ribosomal protein L4/L1echromosome CDS454174 621 + 0.402576
rplF NE0416 Ribosomal protein L6chromosome CDS460368 543 + 0.370166
rplI NE0195 Ribosomal protein L9chromosome CDS233577 456 - 0.464912
rplJ NE2048 Ribosomal protein L10chromosome CDS2224948 516 - 0.45155
rplK NE2050 Ribosomal protein L11chromosome CDS2226462 432 - 0.444444
rplL NE2047 Ribosomal protein L7/L12 C-terminal domainchromosome CDS2224503 375 - 0.448
rplM NE1484 Ribosomal protein L13chromosome CDS1619424 435 - 0.466667
rplP NE0408 Ribosomal protein L16chromosome CDS457364 417 + 0.455635
rplR NE0417 Ribosomal protein L18P/L5E:Ribosomal protein L18chromosome CDS460925 360 + 0.369444
rplS NE1674 Ribosomal protein L19chromosome CDS1809123 399 + 0.458647
rplT NE0955 Ribosomal protein L20chromosome CDS1040928 360 - 0.427778
rplU NE1293 Ribosomal protein L21chromosome CDS1412792 312 - 0.490385
rplV NE0406 Ribosomal protein L22p / L17echromosome CDS456258 333 + 0.435435
rplW NE0403 Ribosomal L23 proteinchromosome CDS454791 336 + 0.327381
rplX NE0412 Ribosomal protein L24/bacterial NUSG:Ribosomal protein L24chromosome CDS458701 318 + 0.330189
rplY NE1825 Ribosomal protein L25chromosome CDS1972375 597 - 0.485762
rpmA NE1292 Ribosomal protein L27chromosome CDS1412522 258 - 0.542636
rpmB NE1465 Ribosomal protein L28chromosome CDS1599634 237 + 0.518987
rpmC NE0409 Ribosomal protein L29chromosome CDS457788 195 + 0.4
rpmD NE0419 Ribosomal protein L30chromosome CDS461840 186 + 0.360215
rpmE,rpL31 NE1036 Ribosomal protein L31chromosome CDS1124143 225 + 0.44
rpmF NE1644 probable 50S ribosomal subunit protein L32chromosome CDS1776708 183 + 0.502732
rpmG NE1466 Ribosomal protein L33chromosome CDS1599908 156 + 0.378205
rpmH NE0390 Ribosomal protein L34chromosome CDS444728 135 - 0.533333
rpmI NE0956 Ribosomal protein L35chromosome CDS1041299 198 - 0.439394
rps4 NE2143 Ribosomal protein S4:S4 domainchromosome CDS2329323 618 + 0.516181
rpsA NE1962 Ribosomal protein S1:S1 RNA binding domainchromosome CDS2117293 1719 - 0.470041
rpsB NE1718 Ribosomal protein S2chromosome CDS1853198 756 - 0.497355
rpsC NE0407 Ribosomal protein S3:Type 2 KH domain:KH domainchromosome CDS456627 648 + 0.381173
rpsD NE0425 Ribosomal protein S4:S4 domainchromosome CDS465022 627 + 0.406699
rpsE NE0418 Ribosomal protein S5chromosome CDS461301 534 + 0.426966
rpsF NE0198 Ribosomal protein S6chromosome CDS234676 441 - 0.473923
rpsG NE2054 Ribosomal protein S7chromosome CDS2231521 471 - 0.44586
rpsH NE0415 Ribosomal protein S8chromosome CDS459961 396 + 0.378788
rpsI NE1483 Ribosomal protein S9chromosome CDS1619020 393 - 0.478372
rpsJ NE0400 Ribosomal protein S10chromosome CDS453150 309 + 0.378641
rpsK NE0424 Ribosomal protein S11chromosome CDS464618 390 + 0.469231
rpsL NE2055 Ribosomal protein S12chromosome CDS2232068 378 - 0.478836
rpsM NE0423 Ribosomal protein S13chromosome CDS464218 360 + 0.394444
rpsO NE0173 Ribosomal protein S15chromosome CDS213159 270 - 0.5
rpsP NE1671 Ribosomal protein S16chromosome CDS1807491 270 + 0.537037
rpsR NE0196 Ribosomal protein S18chromosome CDS234051 279 - 0.451613
rpsS NE0405 Ribosomal protein S19chromosome CDS455965 285 + 0.4
rpsT NE2340 Ribosomal protein S20chromosome CDS2540394 264 - 0.488636
rpsU NE0226 Ribosomal protein S21chromosome CDS257934 213 + 0.460094
rrf NE1715 Ribosome recycling factorchromosome CDS1850708 558 - 0.455197
serS NE0180 tRNA synthetases, class-II (G, H, P and S):Seryl-tRNA synthetasechromosome CDS218882 1314 - 0.520548
tgt NE1141 tgt; tRNA-guanine transglycosylasechromosome CDS1238214 1116 + 0.547491
thrS NE0958 thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) proteinchromosome CDS1042241 1908 - 0.427673
trmB NE1673 tRNA (guanine-N1-)-methyltransferasechromosome CDS1808309 813 + 0.484625
trmU NE0963 trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase proteinchromosome CDS1049051 1089 + 0.471074
trpS NE1727 t-RNA synthetase, class Ib:Tryptophanyl-tRNA synthetasechromosome CDS1862663 1203 + 0.526185
tsaA NE1140 Queuosine biosynthesis proteinchromosome CDS1237156 1062 + 0.52354
tsf NE1717 Ubiquitin-associated domain:Elongation factor Tschromosome CDS1852239 885 - 0.508475
tuf2 NE2052 GTPases-translation elongation factors and sulfate adenylate transferase subunit 1chromosome CDS2228137 1191 - 0.498741
tuf2 NE0399 GTPases-translation elongation factors and sulfate adenylate transferase subunit 1chromosome CDS451898 1191 + 0.497061
valS NE0444 probable valyl-tRNA synthetase (valine--tRNA ligase) proteinchromosome CDS482437 2757 + 0.528836
ygcA NE1857 SAM (and some other nucleotide) binding motifchromosome CDS2006677 1182 + 0.529611
yliG NE0911 Uncharacterized protein family UPF0004chromosome CDS993053 1344 + 0.529018