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2024-05-09 17:02:29

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Lactobacillus plantarum WCFS1, WCFS1

Number of genes found: 158

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Lactobacillus plantarum WCFS1, WCFS1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
alaS lp_2277 alanine--tRNA ligase chromosome CDS2054569 2643 - 0.465002
argS lp_1391 arginine--tRNA ligase chromosome CDS1272688 1689 + 0.461812
asnS1 lp_0956 asparagine--tRNA ligase chromosome CDS887462 1296 - 0.490741
asnS2 lp_1740 asparagine--tRNA ligase chromosome CDS1579487 1299 + 0.43418
aspS lp_1980 aspartate--tRNA ligase chromosome CDS1791669 1797 - 0.459655
cspR lp_2211 rRNA methyltransferase chromosome CDS1995123 513 - 0.411306
cysS lp_0610 cysteine--tRNA ligase chromosome CDS581313 1413 + 0.459306
def1 lp_2155 formylmethionine deformylase chromosome CDS1948356 561 + 0.438503
def2 lp_2935 formylmethionine deformylase chromosome CDS2614918 411 + 0.457421
efp lp_1596 elongation factor P chromosome CDS1452950 558 + 0.449821
fmt lp_1616 methionyl-tRNA formyltransferase chromosome CDS1470265 954 + 0.465409
frr lp_2052 ribosome recycling factor chromosome CDS1855602 564 - 0.471631
fusA1 lp_0076 elongation factor G chromosome CDS73239 2019 + 0.49579
fusA2 lp_1027 elongation factor G chromosome CDS949872 2097 + 0.443491
gatA lp_1148 glutamyl-tRNA amidotransferase, subunit A chromosome CDS1044413 1464 + 0.476093
gatB lp_1149 glutamyl-tRNA amidotransferase, subunit B chromosome CDS1045876 1425 + 0.448421
gatC lp_1147 glutamyl-tRNA amidotransferase, subunit C chromosome CDS1044093 321 + 0.461059
gidC lp_1848 glucose inhibited division protein GidC chromosome CDS1669950 1326 - 0.496983
gltX lp_0609 glutamate--tRNA ligase chromosome CDS579545 1491 + 0.449363
glyQ lp_1965 glycine--tRNA ligase, alpha chain chromosome CDS1779611 900 - 0.453333
glyS lp_1964 glycine--tRNA ligase, beta chain chromosome CDS1777527 2085 - 0.455156
hemK lp_2377 protoporphyrinogen oxidase (putative) chromosome CDS2146749 867 - 0.532872
hisS lp_1981 histidine--tRNA ligase chromosome CDS1793507 1281 - 0.465262
ileS lp_2187 isoleucine--tRNA ligase chromosome CDS1973737 2799 - 0.460879
infA lp_1059 translation initiation factor IF-1 chromosome CDS964252 219 + 0.424658
infB lp_2040 translation initiation factor IF-2 chromosome CDS1840791 2577 - 0.456345
infC lp_1515 translation initiation factor IF-3 chromosome CDS1388025 522 + 0.454023
leuS lp_1316 leucine--tRNA ligase chromosome CDS1210182 2427 + 0.463947
lp_0064 lp_0064 unknown chromosome CDS63662 222 - 0.463964
lp_0443 lp_0443 unknown chromosome CDS397055 1014 + 0.497041
lp_0458 lp_0458 dimethyladenosine transferase (putative) chromosome CDS411603 891 + 0.466891
lp_0541 lp_0541 unknown chromosome CDS492641 288 + 0.378472
lp_0543 lp_0543 unknown chromosome CDS493572 540 + 0.451852
lp_0549 lp_0549 transcription regulator chromosome CDS499655 1008 + 0.502976
lp_0664 lp_0664 prophage Lp1 protein 41 chromosome CDS612330 648 + 0.415123
lp_0684 lp_0684 prophage Lp1 protein 61 chromosome CDS629228 207 - 0.31401
lp_0696 lp_0696 cytosine/adenosine deaminase chromosome CDS641949 507 + 0.487179
lp_0737 lp_0737 ribosomal protein S30EA chromosome CDS674619 567 + 0.426808
lp_1003 lp_1003 acetyltransferase (putative) chromosome CDS925908 546 + 0.481685
lp_1151 lp_1151 RNA methyltransferase chromosome CDS1048761 1374 + 0.452693
lp_1241 lp_1241 unknown chromosome CDS1127706 549 + 0.437158
lp_1291 lp_1291 unknown chromosome CDS1178960 522 + 0.463602
lp_1529 lp_1529 unknown chromosome CDS1398670 315 + 0.428571
lp_1555 lp_1555 rRNA methylase chromosome CDS1421124 774 + 0.479328
lp_1593 lp_1593 ribosomal protein (putative) chromosome CDS1450985 336 + 0.4375
lp_1603 lp_1603 hemolysin homolog chromosome CDS1457902 819 + 0.445665
lp_1693a lp_1693a transcription regulator, C-terminal fragment (putative) chromosome CDS1541127 450 + 0.364444
lp_1724 lp_1724 rRNA methylase (putative) chromosome CDS1562118 1368 + 0.508041
lp_1986 lp_1986 unknown chromosome CDS1797941 447 - 0.456376
lp_1990 lp_1990 ribosomal protein L11 methyltransferase (putative) chromosome CDS1801916 951 - 0.478444
lp_2041 lp_2041 ribosomal protein HS6-type (S12/L30/L7a) chromosome CDS1843382 306 - 0.46732
lp_2231b lp_2231b polyribonucleotide nucleotidyltransferase (putative) chromosome CDS2021540 408 - 0.404412
lp_2360 lp_2360 ribosomal protein acetylating enzyme chromosome CDS2131324 555 - 0.461261
lp_2376 lp_2376 SUA5 family translation factor (putative) chromosome CDS2145439 1020 - 0.495098
lp_2669 lp_2669 unknown chromosome CDS2372049 342 - 0.426901
lp_2738 lp_2738 L-asparaginase chromosome CDS2436437 975 - 0.485128
lp_2840 lp_2840 ribosomal protein acetylating enzyme chromosome CDS2530498 564 - 0.501773
lp_2907 lp_2907 acetyltransferase (putative) chromosome CDS2583564 546 - 0.479853
lp_2909 lp_2909 acetyltransferase (putative) chromosome CDS2584372 528 - 0.5
lp_2937 lp_2937 transcription regulator chromosome CDS2616600 1005 - 0.484577
lp_3196 lp_3196 GTP-binding protein chromosome CDS2849149 1101 - 0.468665
lp_3226 lp_3226 RNA methyltransferase chromosome CDS2874457 1446 + 0.484786
lp_3252 lp_3252 acetyltransferase (putative) chromosome CDS2896424 543 + 0.473296
lp_3379 lp_3379 prophage Lp4 protein 11, DNA replication chromosome CDS2999326 399 - 0.458647
lp_3448 lp_3448 unknown chromosome CDS3056211 498 + 0.449799
lysS lp_0550 lysine--tRNA ligase chromosome CDS500766 1500 + 0.436667
miaA lp_1579 tRNA isopentenyltransferase chromosome CDS1442079 936 + 0.503205
papL lp_1873 polynucleotide adenylyltransferase chromosome CDS1692947 1224 - 0.495915
pepM lp_0257 methionyl aminopeptidase chromosome CDS232292 792 - 0.45202
pheS lp_1558 phenylalanine--tRNA ligase, alpha chain chromosome CDS1423217 1047 + 0.465138
prfA lp_2378 peptide chain release factor 1 chromosome CDS2147608 1083 - 0.452447
prfB-C lp_0741 peptide chain release factor 2, C-terminal fragment chromosome CDS678084 1074 + 0.478585
prfC lp_1255 peptide chain release factor 3 chromosome CDS1138710 1533 + 0.471624
proS lp_2048 proline--tRNA ligase chromosome CDS1850838 1710 - 0.461404
pth lp_0538 aminoacyl-tRNA hydrolase chromosome CDS486761 558 + 0.4319
queA lp_2285 S-adenosylmethionine tRNA ribosyltransferase-isomerase chromosome CDS2063099 1035 - 0.44058
rbfA lp_2039 ribosome-binding factor A chromosome CDS1840415 354 - 0.437853
rhe1 lp_0520 ATP-dependent RNA helicase chromosome CDS465293 1587 + 0.465658
rhe2 lp_1162 ATP-dependent RNA helicase chromosome CDS1060282 1335 + 0.506367
rhe3 lp_2278 ATP-dependent RNA helicase chromosome CDS2057539 1344 - 0.467262
rimK lp_0484 ribosomal protein S6 modification protein chromosome CDS432126 870 + 0.349425
rimM lp_1638 16S rRNA processing protein chromosome CDS1493147 525 + 0.468571
rluA lp_2653 pseudouridylate synthase chromosome CDS2359451 903 + 0.526024
rluB lp_1888 pseudouridylate synthase chromosome CDS1706080 717 - 0.456067
rluD1 lp_1781 pseudouridylate synthase chromosome CDS1612923 924 + 0.49026
rluD2 lp_2221 pseudouridylate synthase chromosome CDS2003745 903 - 0.490587
rluE lp_0963 pseudouridylate synthase chromosome CDS895772 882 + 0.520408
rnpA lp_3688 ribonuclease P chromosome CDS3307180 345 - 0.484058
rplA lp_0620 ribosomal protein L1 chromosome CDS588155 690 + 0.444928
rplB lp_1036 ribosomal protein L2 chromosome CDS954853 840 + 0.444048
rplC lp_1033 ribosomal protein L3 chromosome CDS953265 630 + 0.439683
rplD lp_1034 ribosomal protein L4 chromosome CDS953913 624 + 0.439103
rplE lp_1047 ribosomal protein L5 chromosome CDS958742 543 + 0.406998
rplF lp_1051 ribosomal protein L6 chromosome CDS959949 537 + 0.433892
rplI lp_0013 ribosomal protein L9 chromosome CDS13279 453 + 0.445916
rplJ lp_0621 ribosomal protein L10 chromosome CDS589043 504 + 0.444444
rplK lp_0619 ribosomal protein L11 chromosome CDS587629 426 + 0.460094
rplL lp_0622 ribosomal protein L12/L7 chromosome CDS589608 369 + 0.430894
rplM lp_1077 ribosomal protein L13 chromosome CDS978985 444 + 0.416667
rplN lp_1045 ribosomal protein L14 chromosome CDS958000 369 + 0.439024
rplO lp_1055 ribosomal protein L15 chromosome CDS961635 432 + 0.439815
rplP lp_1041 ribosomal protein L16 chromosome CDS957047 435 + 0.45977
rplQ lp_1063 ribosomal protein L17 chromosome CDS966486 384 + 0.476562
rplR lp_1052 ribosomal protein L18 chromosome CDS960520 366 + 0.442623
rplS lp_1640 ribosomal protein L19 chromosome CDS1494569 357 + 0.464986
rplT lp_1517 ribosomal protein L20 chromosome CDS1388799 357 + 0.456583
rplU lp_1592 ribosomal protein L21 chromosome CDS1450655 309 + 0.436893
rplV lp_1039 ribosomal protein L22 chromosome CDS956031 348 + 0.439655
rplW lp_1035 ribosomal protein L23 chromosome CDS954536 294 + 0.401361
rplX lp_1046 ribosomal protein L24 chromosome CDS958402 312 + 0.426282
rpmA lp_1594 ribosomal protein L27 chromosome CDS1451345 279 + 0.483871
rpmB lp_1624 ribosomal protein L28 chromosome CDS1478004 186 - 0.456989
rpmC lp_1043 ribosomal protein L29 chromosome CDS957471 195 + 0.384615
rpmD lp_1054 ribosomal protein L30 chromosome CDS961421 183 + 0.415301
rpmE lp_0512 ribosomal protein L31 chromosome CDS458582 246 + 0.394309
rpmF lp_1535a ribosomal protein L32 chromosome CDS1403243 180 + 0.433333
rpmG lp_0615 ribosomal protein L33 chromosome CDS585612 150 + 0.426667
rpmI lp_1516 ribosomal protein L35 chromosome CDS1388568 195 + 0.410256
rpmJ lp_1059a ribosomal protein L36 chromosome CDS964507 120 + 0.416667
rpsA lp_1882 ribosomal protein S1 chromosome CDS1699597 1290 - 0.433333
rpsB lp_2055 ribosomal protein S2 chromosome CDS1858071 804 - 0.439055
rpsC lp_1040 ribosomal protein S3 chromosome CDS956391 654 + 0.454128
rpsD lp_2331 ribosomal protein S4 chromosome CDS2108055 609 + 0.431855
rpsE lp_1053 ribosomal protein S5 chromosome CDS960906 501 + 0.469062
rpsF lp_0009 ribosomal protein S6 chromosome CDS9860 300 + 0.396667
rpsG lp_1026 ribosomal protein S7 chromosome CDS949260 471 + 0.44586
rpsH lp_1050 ribosomal protein S8 chromosome CDS959524 396 + 0.426768
rpsI lp_1078 ribosomal protein S9 chromosome CDS979442 393 + 0.447837
rpsJ lp_1032 ribosomal protein S10 chromosome CDS952919 309 + 0.417476
rpsK lp_1061 ribosomal protein S11 chromosome CDS965044 390 + 0.474359
rpsL lp_1025 ribosomal protein S12 chromosome CDS948830 414 + 0.432367
rpsM lp_1060 ribosomal protein S13 chromosome CDS964654 366 + 0.445355
rpsN lp_1048 ribosomal protein S14 chromosome CDS959305 186 + 0.446237
rpsN2 lp_2216 ribosomal protein S14-2 chromosome CDS1999727 270 + 0.474074
rpsO lp_2125 ribosomal protein S15 chromosome CDS1919368 270 - 0.407407
rpsP lp_1636 ribosomal protein S16 chromosome CDS1492439 273 + 0.428571
rpsQ lp_1044 ribosomal protein S17 chromosome CDS957688 270 + 0.392593
rpsR lp_0011 ribosomal protein S18 chromosome CDS10837 237 + 0.443038
rpsS lp_1038 ribosomal protein S19 chromosome CDS955735 276 + 0.423913
rpsT lp_2126 ribosomal protein S20 chromosome CDS1919865 255 + 0.458824
rpsU lp_1973 ribosomal protein S21 chromosome CDS1785273 189 - 0.407407
rsmc lp_0695 16S RNA methylase chromosome CDS641338 609 + 0.45977
rsuA lp_1319 pseudouridylate synthase chromosome CDS1214810 741 + 0.476383
serS1 lp_0501 serine--tRNA ligase chromosome CDS448814 1272 + 0.46305
serS2 lp_1012 serine--tRNA ligase chromosome CDS933125 1278 + 0.445227
sunL lp_1617 rRNA methylase (putative) chromosome CDS1471215 1344 + 0.46503
tgt lp_2282 queuine tRNA-ribosyltransferase chromosome CDS2061647 1143 - 0.447069
thrS lp_1514 threonine--tRNA ligase 1 chromosome CDS1385839 1965 + 0.451908
trmD lp_1639 tRNA (guanine-N1-)-methyltransferase chromosome CDS1493671 741 + 0.480432
trmH lp_0612 tRNA/rRNA methyltransferase chromosome CDS583127 768 + 0.476562
trmU lp_2178 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase chromosome CDS1967888 1125 - 0.475556
trpS lp_0434 tryptophan--tRNA ligase chromosome CDS387822 1017 + 0.454277
truA lp_1076 pseudouridylate synthase A chromosome CDS978088 789 + 0.485425
truB lp_2032 pseudouridylate synthase chromosome CDS1832270 924 - 0.488095
tsf lp_2054 elongation factor TS chromosome CDS1857090 879 - 0.437998
tuf lp_2119 elongation factor Tu chromosome CDS1912916 1188 - 0.44697
tyrS lp_2807 tyrosine--tRNA ligase chromosome CDS2504803 1257 - 0.440732
valS lp_2322 valine--tRNA ligase chromosome CDS2097628 2670 - 0.448315