Gene list
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COG category: Translation, ribosomal structure and biogenesis
Organism: Lactobacillus plantarum WCFS1, WCFS1
Number of genes found: 158
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Lactobacillus plantarum WCFS1, WCFS1 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
alaS | lp_2277 | alanine--tRNA ligase | chromosome | CDS | 2054569 | 2643 | - | 0.465002 |
argS | lp_1391 | arginine--tRNA ligase | chromosome | CDS | 1272688 | 1689 | + | 0.461812 |
asnS1 | lp_0956 | asparagine--tRNA ligase | chromosome | CDS | 887462 | 1296 | - | 0.490741 |
asnS2 | lp_1740 | asparagine--tRNA ligase | chromosome | CDS | 1579487 | 1299 | + | 0.43418 |
aspS | lp_1980 | aspartate--tRNA ligase | chromosome | CDS | 1791669 | 1797 | - | 0.459655 |
cspR | lp_2211 | rRNA methyltransferase | chromosome | CDS | 1995123 | 513 | - | 0.411306 |
cysS | lp_0610 | cysteine--tRNA ligase | chromosome | CDS | 581313 | 1413 | + | 0.459306 |
def1 | lp_2155 | formylmethionine deformylase | chromosome | CDS | 1948356 | 561 | + | 0.438503 |
def2 | lp_2935 | formylmethionine deformylase | chromosome | CDS | 2614918 | 411 | + | 0.457421 |
efp | lp_1596 | elongation factor P | chromosome | CDS | 1452950 | 558 | + | 0.449821 |
fmt | lp_1616 | methionyl-tRNA formyltransferase | chromosome | CDS | 1470265 | 954 | + | 0.465409 |
frr | lp_2052 | ribosome recycling factor | chromosome | CDS | 1855602 | 564 | - | 0.471631 |
fusA1 | lp_0076 | elongation factor G | chromosome | CDS | 73239 | 2019 | + | 0.49579 |
fusA2 | lp_1027 | elongation factor G | chromosome | CDS | 949872 | 2097 | + | 0.443491 |
gatA | lp_1148 | glutamyl-tRNA amidotransferase, subunit A | chromosome | CDS | 1044413 | 1464 | + | 0.476093 |
gatB | lp_1149 | glutamyl-tRNA amidotransferase, subunit B | chromosome | CDS | 1045876 | 1425 | + | 0.448421 |
gatC | lp_1147 | glutamyl-tRNA amidotransferase, subunit C | chromosome | CDS | 1044093 | 321 | + | 0.461059 |
gidC | lp_1848 | glucose inhibited division protein GidC | chromosome | CDS | 1669950 | 1326 | - | 0.496983 |
gltX | lp_0609 | glutamate--tRNA ligase | chromosome | CDS | 579545 | 1491 | + | 0.449363 |
glyQ | lp_1965 | glycine--tRNA ligase, alpha chain | chromosome | CDS | 1779611 | 900 | - | 0.453333 |
glyS | lp_1964 | glycine--tRNA ligase, beta chain | chromosome | CDS | 1777527 | 2085 | - | 0.455156 |
hemK | lp_2377 | protoporphyrinogen oxidase (putative) | chromosome | CDS | 2146749 | 867 | - | 0.532872 |
hisS | lp_1981 | histidine--tRNA ligase | chromosome | CDS | 1793507 | 1281 | - | 0.465262 |
ileS | lp_2187 | isoleucine--tRNA ligase | chromosome | CDS | 1973737 | 2799 | - | 0.460879 |
infA | lp_1059 | translation initiation factor IF-1 | chromosome | CDS | 964252 | 219 | + | 0.424658 |
infB | lp_2040 | translation initiation factor IF-2 | chromosome | CDS | 1840791 | 2577 | - | 0.456345 |
infC | lp_1515 | translation initiation factor IF-3 | chromosome | CDS | 1388025 | 522 | + | 0.454023 |
leuS | lp_1316 | leucine--tRNA ligase | chromosome | CDS | 1210182 | 2427 | + | 0.463947 |
lp_0064 | lp_0064 | unknown | chromosome | CDS | 63662 | 222 | - | 0.463964 |
lp_0443 | lp_0443 | unknown | chromosome | CDS | 397055 | 1014 | + | 0.497041 |
lp_0458 | lp_0458 | dimethyladenosine transferase (putative) | chromosome | CDS | 411603 | 891 | + | 0.466891 |
lp_0541 | lp_0541 | unknown | chromosome | CDS | 492641 | 288 | + | 0.378472 |
lp_0543 | lp_0543 | unknown | chromosome | CDS | 493572 | 540 | + | 0.451852 |
lp_0549 | lp_0549 | transcription regulator | chromosome | CDS | 499655 | 1008 | + | 0.502976 |
lp_0664 | lp_0664 | prophage Lp1 protein 41 | chromosome | CDS | 612330 | 648 | + | 0.415123 |
lp_0684 | lp_0684 | prophage Lp1 protein 61 | chromosome | CDS | 629228 | 207 | - | 0.31401 |
lp_0696 | lp_0696 | cytosine/adenosine deaminase | chromosome | CDS | 641949 | 507 | + | 0.487179 |
lp_0737 | lp_0737 | ribosomal protein S30EA | chromosome | CDS | 674619 | 567 | + | 0.426808 |
lp_1003 | lp_1003 | acetyltransferase (putative) | chromosome | CDS | 925908 | 546 | + | 0.481685 |
lp_1151 | lp_1151 | RNA methyltransferase | chromosome | CDS | 1048761 | 1374 | + | 0.452693 |
lp_1241 | lp_1241 | unknown | chromosome | CDS | 1127706 | 549 | + | 0.437158 |
lp_1291 | lp_1291 | unknown | chromosome | CDS | 1178960 | 522 | + | 0.463602 |
lp_1529 | lp_1529 | unknown | chromosome | CDS | 1398670 | 315 | + | 0.428571 |
lp_1555 | lp_1555 | rRNA methylase | chromosome | CDS | 1421124 | 774 | + | 0.479328 |
lp_1593 | lp_1593 | ribosomal protein (putative) | chromosome | CDS | 1450985 | 336 | + | 0.4375 |
lp_1603 | lp_1603 | hemolysin homolog | chromosome | CDS | 1457902 | 819 | + | 0.445665 |
lp_1693a | lp_1693a | transcription regulator, C-terminal fragment (putative) | chromosome | CDS | 1541127 | 450 | + | 0.364444 |
lp_1724 | lp_1724 | rRNA methylase (putative) | chromosome | CDS | 1562118 | 1368 | + | 0.508041 |
lp_1986 | lp_1986 | unknown | chromosome | CDS | 1797941 | 447 | - | 0.456376 |
lp_1990 | lp_1990 | ribosomal protein L11 methyltransferase (putative) | chromosome | CDS | 1801916 | 951 | - | 0.478444 |
lp_2041 | lp_2041 | ribosomal protein HS6-type (S12/L30/L7a) | chromosome | CDS | 1843382 | 306 | - | 0.46732 |
lp_2231b | lp_2231b | polyribonucleotide nucleotidyltransferase (putative) | chromosome | CDS | 2021540 | 408 | - | 0.404412 |
lp_2360 | lp_2360 | ribosomal protein acetylating enzyme | chromosome | CDS | 2131324 | 555 | - | 0.461261 |
lp_2376 | lp_2376 | SUA5 family translation factor (putative) | chromosome | CDS | 2145439 | 1020 | - | 0.495098 |
lp_2669 | lp_2669 | unknown | chromosome | CDS | 2372049 | 342 | - | 0.426901 |
lp_2738 | lp_2738 | L-asparaginase | chromosome | CDS | 2436437 | 975 | - | 0.485128 |
lp_2840 | lp_2840 | ribosomal protein acetylating enzyme | chromosome | CDS | 2530498 | 564 | - | 0.501773 |
lp_2907 | lp_2907 | acetyltransferase (putative) | chromosome | CDS | 2583564 | 546 | - | 0.479853 |
lp_2909 | lp_2909 | acetyltransferase (putative) | chromosome | CDS | 2584372 | 528 | - | 0.5 |
lp_2937 | lp_2937 | transcription regulator | chromosome | CDS | 2616600 | 1005 | - | 0.484577 |
lp_3196 | lp_3196 | GTP-binding protein | chromosome | CDS | 2849149 | 1101 | - | 0.468665 |
lp_3226 | lp_3226 | RNA methyltransferase | chromosome | CDS | 2874457 | 1446 | + | 0.484786 |
lp_3252 | lp_3252 | acetyltransferase (putative) | chromosome | CDS | 2896424 | 543 | + | 0.473296 |
lp_3379 | lp_3379 | prophage Lp4 protein 11, DNA replication | chromosome | CDS | 2999326 | 399 | - | 0.458647 |
lp_3448 | lp_3448 | unknown | chromosome | CDS | 3056211 | 498 | + | 0.449799 |
lysS | lp_0550 | lysine--tRNA ligase | chromosome | CDS | 500766 | 1500 | + | 0.436667 |
miaA | lp_1579 | tRNA isopentenyltransferase | chromosome | CDS | 1442079 | 936 | + | 0.503205 |
papL | lp_1873 | polynucleotide adenylyltransferase | chromosome | CDS | 1692947 | 1224 | - | 0.495915 |
pepM | lp_0257 | methionyl aminopeptidase | chromosome | CDS | 232292 | 792 | - | 0.45202 |
pheS | lp_1558 | phenylalanine--tRNA ligase, alpha chain | chromosome | CDS | 1423217 | 1047 | + | 0.465138 |
prfA | lp_2378 | peptide chain release factor 1 | chromosome | CDS | 2147608 | 1083 | - | 0.452447 |
prfB-C | lp_0741 | peptide chain release factor 2, C-terminal fragment | chromosome | CDS | 678084 | 1074 | + | 0.478585 |
prfC | lp_1255 | peptide chain release factor 3 | chromosome | CDS | 1138710 | 1533 | + | 0.471624 |
proS | lp_2048 | proline--tRNA ligase | chromosome | CDS | 1850838 | 1710 | - | 0.461404 |
pth | lp_0538 | aminoacyl-tRNA hydrolase | chromosome | CDS | 486761 | 558 | + | 0.4319 |
queA | lp_2285 | S-adenosylmethionine tRNA ribosyltransferase-isomerase | chromosome | CDS | 2063099 | 1035 | - | 0.44058 |
rbfA | lp_2039 | ribosome-binding factor A | chromosome | CDS | 1840415 | 354 | - | 0.437853 |
rhe1 | lp_0520 | ATP-dependent RNA helicase | chromosome | CDS | 465293 | 1587 | + | 0.465658 |
rhe2 | lp_1162 | ATP-dependent RNA helicase | chromosome | CDS | 1060282 | 1335 | + | 0.506367 |
rhe3 | lp_2278 | ATP-dependent RNA helicase | chromosome | CDS | 2057539 | 1344 | - | 0.467262 |
rimK | lp_0484 | ribosomal protein S6 modification protein | chromosome | CDS | 432126 | 870 | + | 0.349425 |
rimM | lp_1638 | 16S rRNA processing protein | chromosome | CDS | 1493147 | 525 | + | 0.468571 |
rluA | lp_2653 | pseudouridylate synthase | chromosome | CDS | 2359451 | 903 | + | 0.526024 |
rluB | lp_1888 | pseudouridylate synthase | chromosome | CDS | 1706080 | 717 | - | 0.456067 |
rluD1 | lp_1781 | pseudouridylate synthase | chromosome | CDS | 1612923 | 924 | + | 0.49026 |
rluD2 | lp_2221 | pseudouridylate synthase | chromosome | CDS | 2003745 | 903 | - | 0.490587 |
rluE | lp_0963 | pseudouridylate synthase | chromosome | CDS | 895772 | 882 | + | 0.520408 |
rnpA | lp_3688 | ribonuclease P | chromosome | CDS | 3307180 | 345 | - | 0.484058 |
rplA | lp_0620 | ribosomal protein L1 | chromosome | CDS | 588155 | 690 | + | 0.444928 |
rplB | lp_1036 | ribosomal protein L2 | chromosome | CDS | 954853 | 840 | + | 0.444048 |
rplC | lp_1033 | ribosomal protein L3 | chromosome | CDS | 953265 | 630 | + | 0.439683 |
rplD | lp_1034 | ribosomal protein L4 | chromosome | CDS | 953913 | 624 | + | 0.439103 |
rplE | lp_1047 | ribosomal protein L5 | chromosome | CDS | 958742 | 543 | + | 0.406998 |
rplF | lp_1051 | ribosomal protein L6 | chromosome | CDS | 959949 | 537 | + | 0.433892 |
rplI | lp_0013 | ribosomal protein L9 | chromosome | CDS | 13279 | 453 | + | 0.445916 |
rplJ | lp_0621 | ribosomal protein L10 | chromosome | CDS | 589043 | 504 | + | 0.444444 |
rplK | lp_0619 | ribosomal protein L11 | chromosome | CDS | 587629 | 426 | + | 0.460094 |
rplL | lp_0622 | ribosomal protein L12/L7 | chromosome | CDS | 589608 | 369 | + | 0.430894 |
rplM | lp_1077 | ribosomal protein L13 | chromosome | CDS | 978985 | 444 | + | 0.416667 |
rplN | lp_1045 | ribosomal protein L14 | chromosome | CDS | 958000 | 369 | + | 0.439024 |
rplO | lp_1055 | ribosomal protein L15 | chromosome | CDS | 961635 | 432 | + | 0.439815 |
rplP | lp_1041 | ribosomal protein L16 | chromosome | CDS | 957047 | 435 | + | 0.45977 |
rplQ | lp_1063 | ribosomal protein L17 | chromosome | CDS | 966486 | 384 | + | 0.476562 |
rplR | lp_1052 | ribosomal protein L18 | chromosome | CDS | 960520 | 366 | + | 0.442623 |
rplS | lp_1640 | ribosomal protein L19 | chromosome | CDS | 1494569 | 357 | + | 0.464986 |
rplT | lp_1517 | ribosomal protein L20 | chromosome | CDS | 1388799 | 357 | + | 0.456583 |
rplU | lp_1592 | ribosomal protein L21 | chromosome | CDS | 1450655 | 309 | + | 0.436893 |
rplV | lp_1039 | ribosomal protein L22 | chromosome | CDS | 956031 | 348 | + | 0.439655 |
rplW | lp_1035 | ribosomal protein L23 | chromosome | CDS | 954536 | 294 | + | 0.401361 |
rplX | lp_1046 | ribosomal protein L24 | chromosome | CDS | 958402 | 312 | + | 0.426282 |
rpmA | lp_1594 | ribosomal protein L27 | chromosome | CDS | 1451345 | 279 | + | 0.483871 |
rpmB | lp_1624 | ribosomal protein L28 | chromosome | CDS | 1478004 | 186 | - | 0.456989 |
rpmC | lp_1043 | ribosomal protein L29 | chromosome | CDS | 957471 | 195 | + | 0.384615 |
rpmD | lp_1054 | ribosomal protein L30 | chromosome | CDS | 961421 | 183 | + | 0.415301 |
rpmE | lp_0512 | ribosomal protein L31 | chromosome | CDS | 458582 | 246 | + | 0.394309 |
rpmF | lp_1535a | ribosomal protein L32 | chromosome | CDS | 1403243 | 180 | + | 0.433333 |
rpmG | lp_0615 | ribosomal protein L33 | chromosome | CDS | 585612 | 150 | + | 0.426667 |
rpmI | lp_1516 | ribosomal protein L35 | chromosome | CDS | 1388568 | 195 | + | 0.410256 |
rpmJ | lp_1059a | ribosomal protein L36 | chromosome | CDS | 964507 | 120 | + | 0.416667 |
rpsA | lp_1882 | ribosomal protein S1 | chromosome | CDS | 1699597 | 1290 | - | 0.433333 |
rpsB | lp_2055 | ribosomal protein S2 | chromosome | CDS | 1858071 | 804 | - | 0.439055 |
rpsC | lp_1040 | ribosomal protein S3 | chromosome | CDS | 956391 | 654 | + | 0.454128 |
rpsD | lp_2331 | ribosomal protein S4 | chromosome | CDS | 2108055 | 609 | + | 0.431855 |
rpsE | lp_1053 | ribosomal protein S5 | chromosome | CDS | 960906 | 501 | + | 0.469062 |
rpsF | lp_0009 | ribosomal protein S6 | chromosome | CDS | 9860 | 300 | + | 0.396667 |
rpsG | lp_1026 | ribosomal protein S7 | chromosome | CDS | 949260 | 471 | + | 0.44586 |
rpsH | lp_1050 | ribosomal protein S8 | chromosome | CDS | 959524 | 396 | + | 0.426768 |
rpsI | lp_1078 | ribosomal protein S9 | chromosome | CDS | 979442 | 393 | + | 0.447837 |
rpsJ | lp_1032 | ribosomal protein S10 | chromosome | CDS | 952919 | 309 | + | 0.417476 |
rpsK | lp_1061 | ribosomal protein S11 | chromosome | CDS | 965044 | 390 | + | 0.474359 |
rpsL | lp_1025 | ribosomal protein S12 | chromosome | CDS | 948830 | 414 | + | 0.432367 |
rpsM | lp_1060 | ribosomal protein S13 | chromosome | CDS | 964654 | 366 | + | 0.445355 |
rpsN | lp_1048 | ribosomal protein S14 | chromosome | CDS | 959305 | 186 | + | 0.446237 |
rpsN2 | lp_2216 | ribosomal protein S14-2 | chromosome | CDS | 1999727 | 270 | + | 0.474074 |
rpsO | lp_2125 | ribosomal protein S15 | chromosome | CDS | 1919368 | 270 | - | 0.407407 |
rpsP | lp_1636 | ribosomal protein S16 | chromosome | CDS | 1492439 | 273 | + | 0.428571 |
rpsQ | lp_1044 | ribosomal protein S17 | chromosome | CDS | 957688 | 270 | + | 0.392593 |
rpsR | lp_0011 | ribosomal protein S18 | chromosome | CDS | 10837 | 237 | + | 0.443038 |
rpsS | lp_1038 | ribosomal protein S19 | chromosome | CDS | 955735 | 276 | + | 0.423913 |
rpsT | lp_2126 | ribosomal protein S20 | chromosome | CDS | 1919865 | 255 | + | 0.458824 |
rpsU | lp_1973 | ribosomal protein S21 | chromosome | CDS | 1785273 | 189 | - | 0.407407 |
rsmc | lp_0695 | 16S RNA methylase | chromosome | CDS | 641338 | 609 | + | 0.45977 |
rsuA | lp_1319 | pseudouridylate synthase | chromosome | CDS | 1214810 | 741 | + | 0.476383 |
serS1 | lp_0501 | serine--tRNA ligase | chromosome | CDS | 448814 | 1272 | + | 0.46305 |
serS2 | lp_1012 | serine--tRNA ligase | chromosome | CDS | 933125 | 1278 | + | 0.445227 |
sunL | lp_1617 | rRNA methylase (putative) | chromosome | CDS | 1471215 | 1344 | + | 0.46503 |
tgt | lp_2282 | queuine tRNA-ribosyltransferase | chromosome | CDS | 2061647 | 1143 | - | 0.447069 |
thrS | lp_1514 | threonine--tRNA ligase 1 | chromosome | CDS | 1385839 | 1965 | + | 0.451908 |
trmD | lp_1639 | tRNA (guanine-N1-)-methyltransferase | chromosome | CDS | 1493671 | 741 | + | 0.480432 |
trmH | lp_0612 | tRNA/rRNA methyltransferase | chromosome | CDS | 583127 | 768 | + | 0.476562 |
trmU | lp_2178 | tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase | chromosome | CDS | 1967888 | 1125 | - | 0.475556 |
trpS | lp_0434 | tryptophan--tRNA ligase | chromosome | CDS | 387822 | 1017 | + | 0.454277 |
truA | lp_1076 | pseudouridylate synthase A | chromosome | CDS | 978088 | 789 | + | 0.485425 |
truB | lp_2032 | pseudouridylate synthase | chromosome | CDS | 1832270 | 924 | - | 0.488095 |
tsf | lp_2054 | elongation factor TS | chromosome | CDS | 1857090 | 879 | - | 0.437998 |
tuf | lp_2119 | elongation factor Tu | chromosome | CDS | 1912916 | 1188 | - | 0.44697 |
tyrS | lp_2807 | tyrosine--tRNA ligase | chromosome | CDS | 2504803 | 1257 | - | 0.440732 |
valS | lp_2322 | valine--tRNA ligase | chromosome | CDS | 2097628 | 2670 | - | 0.448315 |