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2024-05-19 21:07:11

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Yersinia pestis CO92, CO92

Number of genes found: 185

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Yersinia pestis CO92, CO92
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
YPO0029 conserved hypothetical protein chromosome CDS38825 438 + 0.488584
YPO0071 putative methyltransferase chromosome CDS80447 489 - 0.490798
YPO0240 conserved hypothetical protein chromosome CDS238588 1290 - 0.460465
YPO0245a conserved hypothetical protein chromosome CDS243738 573 + 0.467714
YPO0290 conserved hypothetical protein chromosome CDS291275 1080 - 0.525
YPO0293 conserved hypothetical protein chromosome CDS294300 1062 - 0.490584
YPO0316 conserved hypothetical protein chromosome CDS323066 1038 + 0.519268
YPO0362 putative lysyl-tRNA synthetase chromosome CDS371392 978 + 0.492843
YPO0381 putative methylase chromosome CDS397600 741 + 0.538462
YPO0400 hypothetical protein chromosome CDS417807 537 + 0.409683
YPO0466 hypothetical protein chromosome CDS493618 2448 - 0.35335
YPO0588 putative methyltransferase chromosome CDS636017 1188 + 0.495791
YPO0627 putative translational inhibitor protein chromosome CDS688077 381 + 0.354331
YPO0628 putative translational inhibitor protein chromosome CDS688742 405 + 0.511111
YPO0640 hypothetical protein chromosome CDS697119 471 + 0.422505
YPO0884 hypothetical protein chromosome CDS968972 261 - 0.394636
YPO1038 Conserved hypothetical protein chromosome CDS1178545 774 + 0.48708
YPO1066 conserved hypothetical protein chromosome CDS1209358 417 + 0.494005
YPO1104 conserved hypothetical protein chromosome CDS1247504 351 - 0.45584
YPO1175 conserved hypothetical protein chromosome CDS1323368 945 + 0.486772
YPO1284 putative elongation factor P chromosome CDS1442544 573 - 0.460733
YPO1336 putative RNA methyltransferase chromosome CDS1501209 1131 + 0.521662
YPO1591 ribosomal large subunit pseudouridine synthase C chromosome CDS1816989 963 + 0.503634
YPO1595 50S ribosomal protein L32 chromosome CDS1820059 168 + 0.553571
YPO1638 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase chromosome CDS1863725 1116 - 0.499104
YPO1640 putative pseudouridine synthase chromosome CDS1865466 627 - 0.492823
YPO1669 YjgF-family lipoprotein chromosome CDS1900110 378 - 0.417989
YPO1902 hypothetical protein chromosome CDS2137945 582 - 0.489691
YPO1955 putative acetyltransferase chromosome CDS2220029 900 + 0.438889
YPO1996 hypothetical protein chromosome CDS2268167 906 - 0.40287
YPO1997 putative exported protein chromosome CDS2269863 1074 - 0.485102
YPO2010 conserved hypothetical protein chromosome CDS2282141 1092 - 0.495421
YPO2018 putative protoporphyrinogen oxidase chromosome CDS2290317 831 + 0.535499
YPO2070 conserved hypothetical protein chromosome CDS2349958 345 - 0.486957
YPO2212 conserved hypothetical protein chromosome CDS2485525 621 + 0.460548
YPO2213 putative RNA pseudouridylate synthase-family protein chromosome CDS2486570 957 + 0.513062
YPO2228 translation initiation factor SUI1 family protein chromosome CDS2504544 327 + 0.477064
YPO2420 probable formyl transferase chromosome CDS2719869 2004 - 0.457585
YPO2750 conserved hypothetical protein chromosome CDS3082727 933 + 0.488746
YPO2898 putative SpoU-family rRNA methylase chromosome CDS3240880 774 - 0.502584
YPO2923 putative zinc-binding protein chromosome CDS3269085 480 - 0.554167
YPO3134 putative ribosomal protein chromosome CDS3495495 261 + 0.467433
YPO3135 putative ribosomal protein L36 chromosome CDS3495771 144 + 0.479167
YPO3261 probable amidase chromosome CDS3632668 1398 + 0.550072
YPO3279 putative sigma 54 modulation protein chromosome CDS3660327 363 + 0.446281
YPO3398 putative glutamyl-tRNA synthetase chromosome CDS3795916 966 + 0.505176
YPO3504 conserved hypothetical protein chromosome CDS3914946 294 + 0.438776
YPO3590 conserved hypothetical protein chromosome CDS3998123 387 + 0.483204
YPO3655 conserved hypothetical protein chromosome CDS4073470 966 - 0.518634
YPO3674 putative insecticidal toxin chromosome CDS4101516 3036 - 0.481225
YPO3693 hypothetical protein chromosome CDS4127240 639 + 0.41784
alaS alanyl-tRNA synthetase chromosome CDS3683714 2628 - 0.5
alcB putative siderophore biosynthetic enzyme chromosome CDS1742180 582 + 0.484536
ampM methionine aminopeptidase chromosome CDS1184138 792 - 0.488636
ansA L-asparaginase I chromosome CDS2430044 1017 - 0.476893
ansB putative L-asparaginase II precursor chromosome CDS1563862 1038 + 0.467245
argS arginyl-tRNA synthetase chromosome CDS2323093 1731 - 0.499133
asnS asparaginyl-tRNA synthetase chromosome CDS1600525 1401 - 0.498929
aspS aspartyl-tRNA synthetase chromosome CDS2331620 1797 + 0.510295
cafA ribonuclease G chromosome CDS4090621 1470 + 0.476871
cca tRNA nucleotidyltransferase chromosome CDS707417 1239 - 0.533495
cysS cysteinyl-tRNA synthetase chromosome CDS3428619 1386 - 0.497835
dbpA ATP-dependent RNA helicase chromosome CDS2022577 1383 + 0.501085
ddhA glucose-1-phosphate cytidylyltransferase chromosome CDS3471573 786 - 0.437659
deaD cold-shock dead-box protein A chromosome CDS3895290 1995 - 0.535338
def polypeptide deformylase chromosome CDS240943 513 - 0.452242
efp elongation factor P chromosome CDS365600 567 + 0.485009
fmt methionyl-tRNA formyltransferase chromosome CDS239971 948 - 0.470464
frr ribosome recycling factor chromosome CDS1188144 558 + 0.47491
ftsJ ribosomal RNA large subunit methyltransferase J chromosome CDS3914170 630 - 0.455556
fusA elongation factor G chromosome CDS216281 2109 + 0.480797
glnS glutaminyl-tRNA synthetase chromosome CDS2956358 1668 + 0.495803
gltX glutamyl-tRNA synthetase chromosome CDS3333476 1416 + 0.492232
glyQ glycyl-tRNA synthetase alpha subunit chromosome CDS4593300 915 - 0.527869
glyS glycyl-tRNA synthetase beta subunit chromosome CDS4591221 2070 - 0.523188
gshB glutathione synthetase chromosome CDS1027196 960 + 0.491667
hisS histidyl-tRNA synthetase chromosome CDS3213416 1275 - 0.507451
holE DNA polymerase III, theta subunit chromosome CDS2029331 231 - 0.441558
hslR heat shock protein 15 chromosome CDS153758 408 - 0.522059
ileS isoleucyl-tRNA synthetase chromosome CDS504735 2817 + 0.500887
infA translation initiation factor IF-1 chromosome CDS1538760 219 - 0.497717
infB translation initiation factor IF2-2 chromosome CDS3904146 2655 - 0.496045
infC translation initiation factor IF-3 chromosome CDS2732648 552 - 0.474638
iucB putative siderophore biosynthesis protein IucB chromosome CDS1099293 951 + 0.554154
ksgA dimethyladenosine transferase chromosome CDS522965 819 - 0.47619
leuS leucyl-tRNA synthetase chromosome CDS2930913 2583 - 0.510647
ligT putative 2'-5' RNA ligase chromosome CDS3793586 576 + 0.565972
lysS lysyl-tRNA synthetase chromosome CDS971744 1518 - 0.479578
map methionine aminopeptidase chromosome CDS3723448 786 + 0.510178
miaA tRNA delta(2)-isopentenylpyrophosphate transferase chromosome CDS386887 942 + 0.511677
miaB putative tRNA-thiotransferase chromosome CDS2942788 1425 - 0.482105
pcnB poly(A) polymerase chromosome CDS3797123 1323 + 0.517007
pelY periplasmic pectate lyase precursor chromosome CDS4500698 1719 - 0.4968
pheS phenylalanyl-tRNA synthetase alpha chain chromosome CDS2730478 984 - 0.47561
pnp polyribonucleotide nucleotidyltransferase chromosome CDS3898480 2118 - 0.500944
prfA peptide chain release factor 1 chromosome CDS2289235 1083 + 0.514312
prfB peptide chain release factor 2 chromosome CDS973271 1099 - 0.473157
prfC peptide chain release factor 3 chromosome CDS449865 1590 + 0.497484
prmA ribosomal protein L11 methyltransferase chromosome CDS4075024 882 - 0.530612
proS prolyl-tRNA synthetase chromosome CDS1210676 1719 - 0.499127
pth peptidyl-tRNA hydrolase chromosome CDS2283396 591 - 0.477157
queA S-adenosylmethionine:tRNAribosyltransferase-isom erase chromosome CDS3553831 1071 - 0.513539
rbfA ribosome-binding factor A chromosome CDS3903670 411 - 0.445255
rhlB putative DEAD-box helicase chromosome CDS4343947 1287 + 0.486402
rimJ ribosomal-protein-alanine acetyltransferase chromosome CDS2311957 585 + 0.483761
rimM 16S rRNA processing protein chromosome CDS3673178 549 - 0.468124
rluA ribosomal large subunit pseudouridine synthase A chromosome CDS529785 621 - 0.489533
rluD ribosomal large subunit pseudouridine synthase D chromosome CDS3658128 978 - 0.482618
rmf putative ribosome modulation factor chromosome CDS1618498 168 + 0.511905
rnd ribonuclease D chromosome CDS2356340 1122 + 0.481283
rne ribonuclease E chromosome CDS1812749 3666 - 0.510638
rnpA ribonuclease P protein chromosome CDS4620598 360 + 0.508333
rph ribonuclease PH chromosome CDS57519 717 + 0.51325
rplA 50S ribosomal protein L1 chromosome CDS4207281 705 - 0.47234
rplB 50S ribosomal protein l2 chromosome CDS223566 825 + 0.515152
rplC 50S ribosomal protein L3 chromosome CDS221999 630 + 0.488889
rplD 50S ribosomal protein L4 chromosome CDS222645 606 + 0.50165
rplE 50S ribosomal protein L5 chromosome CDS227506 540 + 0.488889
rplF 50S ribosomal protein L6 chromosome CDS228805 534 + 0.513109
rplI 50S ribosomal protein L9 chromosome CDS3947900 453 - 0.494481
rplJ 50S ribosomal protein L10 chromosome CDS4206419 498 - 0.493976
rplK 50S ribosomal protein L11 chromosome CDS4207989 429 - 0.487179
rplL 50S ribosomal protein L7/L12 chromosome CDS4205984 369 - 0.468835
rplM 50S ribosomal protein L13 chromosome CDS3976050 429 - 0.496504
rplN 50S ribosomal protein L14 chromosome CDS226795 372 + 0.502688
rplO 50S ribosomal protein L15 chromosome CDS230405 435 + 0.510345
rplP 50S ribosomal protein L16 chromosome CDS225759 411 + 0.508516
rplQ 50S ribosomal protein L17 chromosome CDS234945 390 + 0.54359
rplR 50S ribosomal protein L18 chromosome CDS229348 354 + 0.516949
rplS 50S ribosomal protein L19 chromosome CDS3671971 348 - 0.477012
rplT 50S ribosomal protein L20 chromosome CDS2731960 357 - 0.498599
rplU 50S ribosomal protein L21 chromosome CDS3921900 312 - 0.455128
rplV 50S ribosomal protein L22 chromosome CDS224698 333 + 0.501502
rplW 50S ribosomal protein L23 chromosome CDS223247 303 + 0.485149
rplX 50S ribosomal protein L24 chromosome CDS227177 315 + 0.460317
rplY 50S ribosomal protein L25 chromosome CDS1420786 285 - 0.463158
rpmA 50S ribosomal protein L27 chromosome CDS3921623 258 - 0.488372
rpmB 50S ribosomal protein L28 chromosome CDS62680 237 + 0.506329
rpmC 50S ribosomal protein L29 chromosome CDS226169 192 + 0.5
rpmD 50S ribosomal protein L30 chromosome CDS230222 180 + 0.433333
rpmE 50S ribosomal protein L31 chromosome CDS119972 216 + 0.490741
rpmG 50S ribosomal protein L33 chromosome CDS62928 168 + 0.392857
rpmH 50S ribosomal protein L34 chromosome CDS4620439 141 + 0.510638
rpmI 50S ribosomal protein L35 chromosome CDS2732354 198 - 0.459596
rpmJ 50S ribosomal protein L36 chromosome CDS232212 117 + 0.444444
rpsA 30S ribosomal protein S1 chromosome CDS1572210 1674 + 0.479092
rpsB 30S ribosomal protein S2 chromosome CDS1185364 726 + 0.477961
rpsC 30S ribosomal protein S3 chromosome CDS225048 699 + 0.493562
rpsD 30S ribosomal protein S4 chromosome CDS233269 621 + 0.478261
rpsE 30S ribosomal protein S5 chromosome CDS229716 504 + 0.484127
rpsF 30S ribosomal protein S6 chromosome CDS3948950 393 - 0.508906
rpsG 30S ribosomal protein S7 chromosome CDS215717 471 + 0.47983
rpsH 30S ribosomal protein S8 chromosome CDS228398 393 + 0.475827
rpsI 30S ribosomal protein S9 chromosome CDS3975643 393 - 0.493639
rpsJ 30S ribosomal protein S10 chromosome CDS221655 312 + 0.525641
rpsK 30S ribosomal protein S11 chromosome CDS232849 390 + 0.502564
rpsM 30S ribosomal protein S13 chromosome CDS232476 357 + 0.504202
rpsN 30S ribosomal protein S14 chromosome CDS228059 306 + 0.513072
rpsO 30S ribosomal protein S15 chromosome CDS3902305 270 - 0.485185
rpsP 30S ribosomal protein S16 chromosome CDS3673748 249 - 0.502008
rpsQ 30S ribosomal protein S17 chromosome CDS226360 255 + 0.466667
rpsR 30S ribosomal protein S18 chromosome CDS3948392 228 - 0.473684
rpsS 30S ribosomal protein S19 chromosome CDS224405 279 + 0.505376
rpsT 30S ribosomal protein S20 chromosome CDS503087 264 - 0.465909
rpsU 30S ribosomal protein S21 chromosome CDS703092 216 - 0.462963
rpsl 30S ribosomal protein S12 chromosome CDS215246 375 + 0.506667
rsmC ribosomal RNA small subunit methyltransferase C chromosome CDS447705 1044 - 0.521073
rsuA ribosomal small subunit pseudouridine synthase A chromosome CDS1423503 708 + 0.519774
serS seryl-tRNA synthetase chromosome CDS1552685 1293 + 0.491106
speG spermidine acetyltransferase chromosome CDS3156889 546 + 0.39011
srmB ATP-dependent RNA helicase chromosome CDS3034941 1326 - 0.505279
tgt queuine tRNA-ribosyltransferase chromosome CDS3552614 1125 - 0.490667
thrS threonyl-tRNA synthetase chromosome CDS2733203 1929 - 0.473302
trmA tRNA (uracil-5)-methyltransferase chromosome CDS4393381 1104 + 0.477355
trmD tRNA (guanine-N1)-methyltransferase chromosome CDS3672399 741 - 0.523617
trmH tRNA (guanosine-2'-O-)-methyltransferase chromosome CDS49607 693 - 0.496392
trpS tryptophanyl-tRNA synthetase chromosome CDS170958 1041 + 0.48415
truA tRNA pseudouridine synthase A chromosome CDS3100249 795 + 0.515723
truB tRNA pseudouridine synthase B chromosome CDS3902696 975 - 0.494359
tsf elongation factor Ts chromosome CDS1186217 858 + 0.480186
tufA elongation factor Tu chromosome CDS4209789 1185 - 0.479325
tufA elongation factor Tu chromosome CDS218462 1185 + 0.481857
tyrS tyrosyl-tRNA synthetase chromosome CDS2661823 1275 - 0.488627
valS valyl-tRNA synthetase chromosome CDS3848237 2898 + 0.519669
yfiF putative tRNA/rRNA methyltransferase chromosome CDS3641196 1167 - 0.533847