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2024-05-06 09:20:01

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18

Number of genes found: 196

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Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
HCM1.28c hypothetical proteinpHCM1 CDS9558 312 - 0.442308
HCM2.0043 hypothetical proteinpHCM2 CDS32224 1056 + 0.453598
HCM2.0068c hypothetical proteinpHCM2 CDS57876 897 - 0.556299
HCM2.0128 hypothetical proteinpHCM2 CDS102462 306 + 0.486928
STY0052 30S ribosomal protein S20chromosome CDS52277 264 - 0.465909
STY0055 isoleucyl-tRNA synthetasechromosome CDS53852 2835 + 0.548501
STY0091 putative lipoproteinchromosome CDS93425 231 + 0.484848
STY0105 dimethyladenosine transferasechromosome CDS102467 822 - 0.526764
STY0209 poly(A) polymerasechromosome CDS218282 1419 - 0.562368
STY0210 glutamyl-tRNA synthetase-related proteinchromosome CDS219841 897 - 0.578595
STY0238 methionine aminopeptidasechromosome CDS249937 795 - 0.522013
STY0239 30S ribosomal protein S2chromosome CDS251181 726 + 0.511019
STY0240 elongation factor Tschromosome CDS252164 852 + 0.529343
STY0242 ribosome recycling factorchromosome CDS254032 558 + 0.510753
STY0265 putative release factorchromosome CDS278825 423 + 0.553191
STY0269 prolyl-tRNA synthetasechromosome CDS280765 1719 - 0.543921
STY0442 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS451765 1065 + 0.556808
STY0443 queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylasechromosome CDS453026 1128 + 0.525709
STY0478 hypothetical proteinchromosome CDS483689 285 + 0.410526
STY0513 putative 50s ribosomal protein L36 (second copy)chromosome CDS519479 141 + 0.432624
STY0585 cysteinyl-tRNA synthetasechromosome CDS592342 1386 + 0.549062
STY0666 ribonuclease I precursorchromosome CDS664818 807 - 0.551425
STY0699 leucyl-tRNA synthetasechromosome CDS693874 2583 - 0.558266
STY0724 glutaminyl-tRNA synthetasechromosome CDS723401 1668 + 0.53717
STY0855 putative ATP-dependent RNA helicase rhlEchromosome CDS849385 1368 + 0.584795
STY0908 ribosomal protein S6 modification proteinchromosome CDS900974 903 + 0.563677
STY0951 initiation factor IF-1chromosome CDS940884 219 - 0.488584
STY0961 seryl-tRNA synthetasechromosome CDS954308 1293 + 0.53983
STY0981 30S ribosomal protein S1chromosome CDS976302 1674 + 0.510753
STY1027 hypothetical bacteriophage proteinchromosome CDS1019268 573 + 0.52356
STY1087 ribosome modulation factor (protein E)chromosome CDS1066679 168 + 0.541667
STY1205 ribosomal-protein-alanine acetyltransferasechromosome CDS1162781 585 + 0.512821
STY1226 ribonuclease Echromosome CDS1179342 3204 - 0.581461
STY1227 ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)chromosome CDS1183119 960 + 0.544792
STY1230 50S ribosomal protein L32chromosome CDS1185516 174 + 0.528736
STY1274 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS1231074 1107 - 0.542005
STY1277 putative ribosomal large subunit pseudouridine synthase Bchromosome CDS1233033 666 - 0.528529
STY1330 conserved hypothetical proteinchromosome CDS1288308 621 + 0.52657
STY1331 putative pseudouridine synthasechromosome CDS1289029 876 + 0.56621
STY1345 putative translation initiaiton factorchromosome CDS1305121 327 + 0.461774
STY1453 ribosomal-protein-serine acetyltransferasechromosome CDS1404112 540 + 0.511111
STY1513 putative isomerasechromosome CDS1469419 1080 - 0.386111
STY1561 spermidine N1-acetyltransferasechromosome CDS1510962 561 + 0.477718
STY1673 tyrosyl-tRNA synthetasechromosome CDS1601969 1275 - 0.527843
STY1773 phenylalanyl-tRNA synthetase alpha chainchromosome CDS1696026 984 - 0.536585
STY1775 50S ribosomal subunit protein L20chromosome CDS1697311 357 - 0.498599
STY1776 50S ribosomal subunit protein L35chromosome CDS1697718 198 - 0.484848
STY1778 threonyl-tRNA synthetasechromosome CDS1698557 1929 - 0.50337
STY1820 L-Asparaginase Ichromosome CDS1740439 1017 + 0.526057
STY1909 peptidyl-tRNA hydrolasechromosome CDS1802695 609 + 0.520525
STY1910 putative ATP/GTP-binding proteinchromosome CDS1803420 1092 + 0.527473
STY1947 ribonuclease Dchromosome CDS1835623 1128 - 0.549645
STY1952 conserved hypothetical proteinchromosome CDS1842160 345 + 0.510145
STY2048 putative bacteriophage proteinchromosome CDS1914557 558 - 0.471326
STY2109 aspartyl-tRNA synthetasechromosome CDS1960070 1773 - 0.564016
STY2117 arginyl-tRNA synthetasechromosome CDS1967557 1734 + 0.551326
STY2346 hypothetical proteinchromosome CDS2183793 885 + 0.500565
STY2404 conserved hypothetical proteinchromosome CDS2236307 939 - 0.574015
STY2447 EF-P-family protein (pseudogene)chromosome pseudo2277111 573 + 0.511344
STY2459 ribosomal small subunit pseudouridine synthasechromosome CDS2290088 696 - 0.54454
STY2461 50s ribosomal protein L25chromosome CDS2292820 285 + 0.512281
STY2529 putative lipopolysaccharide modification proteinchromosome CDS2363684 1983 + 0.540595
STY2599 tRNA pseudouridine synthase Achromosome CDS2435482 813 - 0.558426
STY2617 conserved hypothetical proteinchromosome CDS2450682 933 - 0.530547
STY2654 glutamyl-tRNA synthetasechromosome CDS2490763 1425 - 0.552982
STY2767 histidyl-tRNA synthetasechromosome CDS2619121 1275 - 0.559216
STY2791 putative RNA methyltransferasechromosome CDS2647697 732 - 0.571038
STY2814 conserved hypothetical proteinchromosome CDS2678079 552 - 0.565217
STY2836 ATP-dependent RNA helicase SrmBchromosome CDS2698505 1335 + 0.548315
STY2841 putative RNA methyltransferasechromosome CDS2703013 1038 - 0.570328
STY2851 ftsH suppressor protein SfhBchromosome CDS2721427 981 - 0.534149
STY2853 putative sigma(54) modulation proteinchromosome CDS2723548 339 + 0.471976
STY2860 50S ribosomal subunit protein L19chromosome CDS2730753 348 - 0.482759
STY2861 tRNA(guanine-N1)methyltransferasechromosome CDS2731141 768 - 0.540365
STY2862 16S rRNA processing proteinchromosome CDS2731953 549 - 0.499089
STY2863 30S ribosomal subunit protein S16chromosome CDS2732520 249 - 0.522088
STY2871 small protein Achromosome CDS2740983 339 + 0.516224
STY2948 alanyl-tRNA synthetasechromosome CDS2824270 2631 - 0.551121
STY3196 lysyl tRNA synthetase (LysRS)chromosome CDS3061741 1518 - 0.539526
STY3197 peptide chain release factor 2 (RF-2)chromosome CDS3063268 1099 - 0.539581
STY3248 glutathione synthetasechromosome CDS3112625 948 + 0.541139
STY3259 L-asparaginasechromosome CDS3121165 1047 - 0.527221
STY3383 tRNA nucleotidyltransferasechromosome CDS3226722 1242 + 0.589372
STY3388 30S ribosomal subunit protein S21chromosome CDS3231555 216 + 0.518519
STY3400 conserved hypothetical proteinchromosome CDS3245856 1137 - 0.532982
STY3461 ATP-dependent RNA helicase (dead-box protein)chromosome CDS3301996 1941 - 0.573931
STY3463 polynucleotide phosphorylasechromosome CDS3305058 2136 - 0.56133
STY3464 30S ribosomal subunit protein S15chromosome CDS3307435 270 - 0.5
STY3465 tRNA pseudouridine 55 synthase (psi55 synthase) (p35 protein)chromosome CDS3307855 945 - 0.557672
STY3466 ribosome-binding factor A (P15B protein)chromosome CDS3308799 402 - 0.534826
STY3467 protein chain initiation factor 2chromosome CDS3309421 2679 - 0.553565
STY3475 cell division proteinchromosome CDS3321251 627 - 0.515152
STY3476 conserved hypothetical proteinchromosome CDS3321965 333 + 0.471471
STY3482 50S ribosomal subunit protein L27chromosome CDS3327024 258 - 0.496124
STY3483 50S ribosomal subunit protein L21chromosome CDS3327301 312 - 0.490385
STY3500 probable sigma(54) modulation proteinchromosome CDS3340392 288 + 0.461806
STY3524 30S ribosomal subunit protein S9chromosome CDS3366017 393 - 0.531807
STY3525 50S ribosomal subunit protein L13chromosome CDS3366425 429 - 0.512821
STY3563 ribosomal protein L11 methyltransferasechromosome CDS3407332 882 + 0.556689
STY3564 conserved hypothetical proteinchromosome CDS3408993 846 + 0.536643
STY3671 possible lipoproteinchromosome CDS3523748 807 - 0.429988
STY3733 50S ribosomal subunit protein L7/L12chromosome CDS3585623 366 - 0.464481
STY3734 50S ribosomal subunit protein L10chromosome CDS3586055 498 - 0.52008
STY3735 50S ribosomal subunit protein L1chromosome CDS3586968 705 - 0.533333
STY3736 50S ribosomal subunit protein L11chromosome CDS3587676 429 - 0.524476
STY3745 tRNA (uracil-5)-methyltransferasechromosome CDS3603465 1101 + 0.520436
STY3774 50S ribosomal protein L31chromosome CDS3639438 213 - 0.488263
STY3850 conserved hypothetical proteinchromosome CDS3706680 438 - 0.554795
STY3939 RNase P, protein componentchromosome CDS3803950 360 - 0.558333
STY4060 RNase PHchromosome CDS3920902 717 + 0.546722
STY4066 50S ribosomal subunit protein L28chromosome CDS3925835 237 + 0.518987
STY4067 50S ribosomal subunit protein L33chromosome CDS3926092 168 + 0.404762
STY4101 putative RNA-methyltransferasechromosome CDS3959072 474 - 0.563291
STY4114 selenocysteine-specific elongation factorchromosome CDS3975401 1851 + 0.568882
STY4143 glycine-tRNA synthetase, alpha subunitchromosome CDS4006109 912 + 0.552632
STY4144 glycine-tRNA synthetase, beta subunitchromosome CDS4007030 2070 + 0.552657
STY4182 putative polysaccharide biosynthesis protein subunit Bchromosome CDS4042585 2301 + 0.569318
STY4220 putative regulatory proteinchromosome CDS4085586 381 - 0.435696
STY4299 heat shock proteinchromosome CDS4177131 402 - 0.567164
STY4410 putative pseudouridine synthasechromosome CDS4277873 870 + 0.510345
STY4439 conserved hypothetical proteinchromosome CDS4309084 999 + 0.546547
STY4448 hypothetical proteinchromosome CDS4317425 339 - 0.572271
STY4572 hypothetical proteinchromosome CDS4449922 420 + 0.497619
STY4595 conserved hypothetical proteinchromosome CDS4471619 360 + 0.469444
STY4704 lysyl-tRNA synthetasechromosome CDS4562588 978 + 0.541922
STY4906 conserved hypothetical proteinchromosome CDS4767703 1029 - 0.5724
STY4910 peptide chain release factor 3chromosome CDS4770453 1590 + 0.543396
asnS asparaginyl-tRNA synthetasechromosome CDS1001995 1401 - 0.551035
efp elongation factor Pchromosome CDS4556104 567 + 0.514991
fms polypeptide deformylasechromosome CDS4252057 510 - 0.515686
fmt methionyl-tRNA formyltransferasechromosome CDS4251094 948 - 0.547468
fusA elongation factor Gchromosome CDS4227831 2115 + 0.51773
hemK HemK protein, putative protoporphyrinogen oxidasechromosome CDS1794100 834 - 0.58753
infC translation initiation factor IF-3chromosome CDS1698011 543 - 0.475138
lasT putative RNA methyltransferasechromosome CDS4808327 687 + 0.534207
ligT 2'-5' RNA ligasechromosome CDS222159 531 - 0.613936
miaA tRNA delta-2-isopentenylpyrophosphate (IPP) transferasechromosome CDS4579891 951 + 0.541535
miaB MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase))chromosome CDS711231 1467 - 0.540559
miaE tRNA hydroxylasechromosome CDS4669470 765 + 0.550327
pilK putative exported proteinchromosome CDS4436587 468 + 0.540598
prfA peptide chain release factor 1 (RF-1)chromosome CDS1794933 1083 - 0.579871
prfH putative peptide chain release factorchromosome CDS369507 615 + 0.556098
relE conserved hypothetical proteinchromosome CDS4647757 285 + 0.470175
rfbF glucose-1-phosphate cytidylyltransferasechromosome CDS2131338 774 - 0.435401
rhlB putative ATP-dependent RNA helicasechromosome CDS3496937 1266 + 0.546604
rluA ribosomal large subunit pseudouridine synthase Achromosome CDS109129 660 - 0.575758
rnG ribonuclease Gchromosome CDS3393449 1470 - 0.529252
rplB 50S ribosomal subunit protein L2chromosome CDS4234878 822 + 0.532847
rplC 50S ribosomal subunit protein L3chromosome CDS4233316 630 + 0.515873
rplD 50S ribosomal subunit protein L4chromosome CDS4233956 606 + 0.533003
rplE 50S ribosomal subunit protein L5chromosome CDS4238803 540 + 0.494444
rplF 50S ribosomal subunit protein L6chromosome CDS4240101 534 + 0.516854
rplI 50s ribosomal subunit protein L9chromosome CDS4607047 450 + 0.508889
rplN 50S ribosomal subunit protein L14chromosome CDS4238092 372 + 0.5
rplO 50S ribosomal subunit protein L15chromosome CDS4241702 435 + 0.544828
rplP 50S ribosomal subunit protein L16chromosome CDS4237073 411 + 0.523114
rplQ 50S ribosomal subunit protein L17chromosome CDS4246242 384 + 0.544271
rplR 50S ribosomal subunit protein L18chromosome CDS4240644 354 + 0.528249
rplV 50S ribosomal subunit protein L22chromosome CDS4236009 333 + 0.501502
rplW 50S ribosomal subunit protein L23chromosome CDS4234558 303 + 0.491749
rplX 50S ribosomal subunit protein L24chromosome CDS4238474 315 + 0.457143
rpmC 50S ribosomal subunit protein L29chromosome CDS4237483 192 + 0.53125
rpmD 50S ribosomal subunit protein L30chromosome CDS4241519 180 + 0.511111
rpmE2 putative 50s ribosomal protein L31 (second copy)chromosome CDS519213 261 + 0.43295
rpmH 50s ribosomal protein l34chromosome CDS3804326 141 - 0.524823
rpmJ 50S ribosomal subunit protein L36chromosome CDS4243507 117 + 0.478632
rpsC 30S ribosomal subunit protein S3chromosome CDS4236359 702 + 0.511396
rpsD 30S ribosomal subunit protein S4chromosome CDS4244566 621 + 0.513688
rpsE 30S ribosomal subunit protein S5chromosome CDS4241012 504 + 0.505952
rpsF 30s ribosomal protein S6chromosome CDS4606057 396 + 0.527778
rpsG 30S ribosomal subunit protein S7chromosome CDS4227264 471 + 0.498938
rpsH 30S ribosomal subunit protein S8chromosome CDS4239696 393 + 0.501272
rpsJ 30S ribosomal subunit protein S10chromosome CDS4232972 312 + 0.544872
rpsK 30S ribosomal subunit protein S11chromosome CDS4244143 390 + 0.512821
rpsL 30S ribosomal subunit protein S12chromosome CDS4226794 375 + 0.528
rpsM 30S ribosomal subunit protein S13chromosome CDS4243770 357 + 0.521008
rpsN 30S ribosomal subunit protein S14chromosome CDS4239357 306 + 0.522876
rpsQ 30S ribosomal subunit protein S17chromosome CDS4237674 255 + 0.478431
rpsR 30s ribosomal subunit protein S18chromosome CDS4606778 228 + 0.52193
rpsS 30S ribosomal subunit protein S19chromosome CDS4235716 279 + 0.491039
strA streptomycin phosphotransferasepHCM1 CDS166864 804 + 0.562189
sun sun proteinchromosome CDS4249753 1290 - 0.542636
trmH tRNA (guanosine-2'-O)-methyltransferasechromosome CDS3911423 690 - 0.547826
trpS tryptophanyl-tRNA synthetasechromosome CDS4193344 1005 + 0.517413
trpS2 probable tryptophanyl-tRNA synthetasechromosome CDS4725840 1014 - 0.523669
tufA elongation factor Tuchromosome CDS4230017 1185 + 0.53924
tufB elongation factor Tuchromosome CDS3589422 1185 - 0.537553
valS valyl-tRNA synthetasechromosome CDS4673101 2856 - 0.566176
ybfE conserved hypothetical proteinchromosome CDS733795 294 - 0.527211
ybjF hypothetical RNA methyltransferasechromosome CDS907526 1128 + 0.562057
ygcA putative RNA methyltransferasechromosome CDS2960705 1296 - 0.542438
yjfH probable tRNA/rRNA methyltransferasechromosome CDS4589954 732 + 0.572404
yjgF conserved hypothetical proteinchromosome CDS4659111 387 - 0.547804
yliG conserved hypothetical proteinchromosome CDS885863 1326 - 0.539216
yqcB putative RNA pseudouridylate synthasechromosome CDS2971083 783 - 0.582375
yrdC conserved hypothetical proteinchromosome CDS4254841 573 + 0.541012