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2024-05-04 08:36:03

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Idiomarina loihiensis L2TR, L2TR

Number of genes found: 173

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Idiomarina loihiensis L2TR, L2TR
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA IL2224 Predicted pseudouridylate synthase, Rlu familychromosome CDS2378371 657 + 0.520548
NA IL2275 Truncated class II lysyl-tRNA synthetasechromosome CDS2439961 978 - 0.465235
NA IL1495 Uncharacterized conserved proteinchromosome CDS1602504 696 + 0.469828
NA IL2042 rRNA methyltransferase, TrmH familychromosome CDS2184054 723 - 0.495159
NA IL2160 RimK-like domain (C-terminal) fused to uncharacterized conserved domainchromosome CDS2301694 1461 + 0.451745
NA IL0585 Cytosine/adenosine deaminase putativechromosome CDS625367 453 - 0.523179
NA IL2068 Acetyltransferase, GNAT familychromosome CDS2204375 546 - 0.457875
NA IL1491 ATP-dependent RNA helicasechromosome CDS1598576 1119 + 0.503128
NA IL0859 SmpA /OmlA family lipoproteinchromosome CDS916663 387 + 0.426357
NA IL2394 Glutathione synthasechromosome CDS2567944 948 - 0.466245
NA IL1600 Endoribonuclease L-PSP family proteinchromosome CDS1717909 390 - 0.448718
NA IL2227 Nucleoside-diphosphate-sugar pyrophosphorylasechromosome CDS2380729 678 - 0.480826
NA IL2379 Endoribonuclease L-PSP family proteinchromosome CDS2551098 393 - 0.493639
NA IL1036 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNAchromosome CDS1112179 783 + 0.484036
NA IL0934 Uncharacterized conserved secreted proteinchromosome CDS986367 855 - 0.494737
NA IL1541 Predicted exonuclease of the beta-lactamase foldchromosome CDS1659277 1359 - 0.46652
NA IL1746 Possible translation factor, Sua5/YciO/YrdC/YwlC familychromosome CDS1879126 624 - 0.442308
NA IL0805 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferasechromosome CDS863050 1353 - 0.505543
NA IL1309 RNA pseudouridylate synthase-family proteinchromosome CDS1406359 576 + 0.501736
NA IL2251 Glutamyl-tRNA synthetase related proteinchromosome CDS2409726 852 + 0.49061
NA IL2288 Predicted tRNA-dihydrouridine synthasechromosome CDS2451233 972 + 0.495885
NA IL0650 Acetyltransferase, GNAT familychromosome CDS707089 513 + 0.387914
NA IL2407 Acetyltransferase, GNAT familychromosome CDS2582710 447 - 0.49217
NA IL0893 Modification methylase, HemK familychromosome CDS951878 930 - 0.482796
NA IL1348 Predicted pseudouridylate synthase, Rlu familychromosome CDS1446413 948 - 0.466245
NA IL0530 Predicted exonuclease of the beta-lactamase foldchromosome CDS555862 1392 - 0.52227
NA IL0022 Possible translation factor, Sua5/YciO/YrdC/YwlC familychromosome CDS24884 561 + 0.520499
NA IL1564 Predicted S-adenosylmethionine-dependent methyltransferasechromosome CDS1677505 588 + 0.481293
NA IL0849 Predicted pseudouridylate synthase, Rlu familychromosome CDS907030 711 - 0.47398
NA IL1942 RRNA methylase, SpoU familychromosome CDS2065609 747 - 0.504685
NA IL1743 RNA pseudouridylate synthase-family proteinchromosome CDS1876870 861 - 0.520325
NA IL1583 Uncharacterized conserved proteinchromosome CDS1698043 534 - 0.490637
NA IL1928 Predicted tRNA-dihydrouridine synthasechromosome CDS2055069 999 - 0.505506
NA IL1553 Peptidyl-tRNA hydrolasechromosome CDS1669913 411 - 0.428224
NA IL2028 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunitchromosome CDS2171260 402 + 0.465174
NA IL0395 Sigma-54 modulation proteinchromosome CDS414571 288 - 0.409722
NA IL1227 Uncharacterized conserved membrane proteinchromosome CDS1320901 732 - 0.404372
NA IL0932 Predicted GTPase, probable translation factorchromosome CDS984815 1092 + 0.46978
NA IL1629 Predicted LytTr DNA-binding domainchromosome CDS1742045 192 - 0.442708
NA IL2430 Predicted rRNA/tRNA methylase, SpoU familychromosome CDS2603554 465 - 0.470968
NA IL0977 Predicted RNA-binding protein containing KH domainchromosome CDS1032454 297 + 0.424242
alaS IL1738 Alanyl-tRNA synthetasechromosome CDS1869991 2598 - 0.475366
ansA IL1330 L-asparaginase Ichromosome CDS1431543 1014 + 0.45858
argS IL2460 Arginyl-tRNA synthetasechromosome CDS2632658 1743 - 0.488812
asnS IL1327 Asparaginyl-tRNA synthetasechromosome CDS1427582 1401 + 0.479657
aspS IL1089 Aspartyl-tRNA synthetasechromosome CDS1172870 1770 - 0.49096
cafA IL0385 RNase Gchromosome CDS402147 1470 + 0.472789
cca IL1966 tRNA nucleotidyltransferasechromosome CDS2099429 1113 + 0.496855
cysS IL1033 Cysteinyl-tRNA synthetasechromosome CDS1108341 1380 + 0.484783
dbpA IL1413 ATP-dependent RNA helicasechromosome CDS1516437 1425 + 0.45614
deaD IL1991 ATP-dependent RNA helicasechromosome CDS2124009 1785 - 0.487955
def IL0018 N-formylmethionyl-tRNA deformylasechromosome CDS22243 525 - 0.472381
dtd IL2448 D-Tyr-tRNAtyr deacylasechromosome CDS2619719 438 + 0.495434
efp IL2276 Translation elongation factor Pchromosome CDS2440945 570 - 0.450877
fmt IL0017 Methionyl-tRNA formyltransferasechromosome CDS21293 951 - 0.519453
frr IL0842 Ribosome recycling factorchromosome CDS899409 558 - 0.4319
ftsJ IL0976 23S rRNA methylasechromosome CDS1031736 627 - 0.460925
fusA IL0349 Translation elongation factor EF-G, GTPasechromosome CDS363141 2124 + 0.459981
gatA IL1971 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunitchromosome CDS2103275 1557 + 0.49711
glnS IL1478 Glutaminyl-tRNA synthetasechromosome CDS1586721 1686 - 0.479241
gltX IL1770 Glutamyl-tRNA synthetase, catalytic subunitchromosome CDS1904423 1407 - 0.487562
glyQ IL0006 Glycyl-tRNA synthetase, alpha subunitchromosome CDS8544 927 - 0.513484
glyS IL0005 Glycyl-tRNA synthetase, beta subunitchromosome CDS6465 2067 - 0.48089
gshB IL2217 Glutathione synthasechromosome CDS2370873 945 + 0.471958
hemK IL0924 Protoporphyrinogen oxidasechromosome CDS977608 846 - 0.491726
hisS IL2033 Histidyl-tRNA synthetasechromosome CDS2175866 1248 - 0.494391
ileS IL1128 Isoleucyl-tRNA synthetasechromosome CDS1206761 2835 - 0.500882
infA IL0673 Translation initiation factor 1chromosome CDS727993 219 + 0.484018
infB IL0968 Translation initiation factor 2chromosome CDS1021210 2691 - 0.476774
infC IL1398 Translation initiation factor 3chromosome CDS1500394 546 - 0.465201
ksgA IL2232 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferasechromosome CDS2387110 867 + 0.472895
leuS IL0947 Leucyl-tRNA synthetasechromosome CDS1001006 2577 + 0.487776
lysU IL0822 Lysyl-tRNA synthetase class IIchromosome CDS877140 1512 - 0.482804
map IL0846 Methionine aminopeptidasechromosome CDS902744 789 + 0.455006
miaA IL0332 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS341761 951 + 0.498423
miaB IL0941 2-methylthioadenine synthetasechromosome CDS995353 1440 + 0.472917
pcnB IL2252 Poly(A) polymerasechromosome CDS2410659 1389 + 0.49892
pheS IL1395 Phenylalanyl-tRNA synthetase alpha subunitchromosome CDS1498652 981 - 0.475025
pnp IL0964 Polynucleotide phosphorylasechromosome CDS1017175 2151 - 0.456067
prfA IL0925 Protein chain release factor Achromosome CDS978450 1095 - 0.484018
prfB IL0823 Protein chain release factor B, RF-2chromosome CDS878688 1056 - 0.494318
prfC IL1879 Peptide chain release factor RF-3chromosome CDS2009597 1590 - 0.472956
prmA IL2287 Ribosomal protein L11 methylasechromosome CDS2450227 882 + 0.517007
proS IL0886 Prolyl-tRNA synthetasechromosome CDS946201 1704 + 0.482981
pth IL0931 Peptidyl-tRNA hydrolasechromosome CDS984212 597 + 0.497487
queA IL2206 S-adenosylmethionine:tRNA-ribosyltransferase-iso merasechromosome CDS2357386 1056 - 0.489583
rbfA IL0967 Ribosome-binding factor Achromosome CDS1020805 387 - 0.452196
relE IL1161 Cytotoxic translational repressor of toxin-antitoxin stability systemchromosome CDS1240505 288 - 0.399306
rhlB IL2363 ATP-dependent RNA helicasechromosome CDS2533858 1278 + 0.5
rhlE IL1546 ATP-dependent RNA helicasechromosome CDS1664644 1251 + 0.478018
rimK IL0497 Ribosomal protein S6 modification enzymechromosome CDS522727 906 - 0.504415
rimM IL1725 RimMchromosome CDS1855898 525 - 0.474286
rmf IL1286 Ribosome modulation factorchromosome CDS1383474 177 + 0.480226
rnd IL1826 Ribonuclease Dchromosome CDS1958589 1173 - 0.490196
rne IL1349 RNase Echromosome CDS1447822 2943 + 0.474346
rnpA IL2639 RNase P protein componentchromosome CDS2838770 378 - 0.441799
rph IL2425 RNase PHchromosome CDS2597204 714 + 0.498599
rplA IL0342 Ribosomal protein L1chromosome CDS351524 696 + 0.452586
rplB IL1921 Ribosomal protein L2chromosome CDS2050285 825 - 0.509091
rplC IL1924 Ribosomal protein L3chromosome CDS2052047 639 - 0.488263
rplD IL1923 Ribosomal protein L4chromosome CDS2051423 606 - 0.463696
rplE IL1904 Ribosomal protein L5chromosome CDS2037674 540 - 0.47963
rplF IL1901 Ribosomal protein L6Pchromosome CDS2036390 534 - 0.47191
rplI IL1937 Ribosomal protein L9chromosome CDS2063644 453 - 0.423841
rplJ IL0343 Ribosomal protein L10chromosome CDS352487 519 + 0.456647
rplK IL0341 Ribosomal protein L11chromosome CDS351092 429 + 0.501166
rplL IL0344 Ribosomal protein L7/L12chromosome CDS353060 375 + 0.474667
rplM IL0414 Ribosomal protein L13chromosome CDS429546 429 + 0.445221
rplN IL1906 Ribosomal protein L14chromosome CDS2038559 369 - 0.509485
rplO IL1897 Ribosomal protein L15chromosome CDS2034890 435 - 0.491954
rplP IL1917 Ribosomal protein L16chromosome CDS2048528 414 - 0.483092
rplQ IL1890 Ribosomal protein L17chromosome CDS2030434 402 - 0.480099
rplR IL1900 Ribosomal protein L18chromosome CDS2036027 354 - 0.502825
rplS IL1723 Ribosomal protein L19chromosome CDS1854748 360 - 0.463889
rplT IL1396 Ribosomal protein L20chromosome CDS1499756 354 - 0.457627
rplU IL0475 Ribosomal protein L21chromosome CDS501508 312 + 0.483974
rplV IL1919 Ribosomal protein L22chromosome CDS2049644 333 - 0.501502
rplW IL1922 Ribosomal protein L23chromosome CDS2051124 303 - 0.422442
rplX IL1905 Ribosomal protein L24chromosome CDS2038234 315 - 0.453968
rplY IL0930 Ribosomal protein L25chromosome CDS983532 666 + 0.465465
rpmA IL0476 Ribosomal protein L27chromosome CDS501835 258 + 0.46124
rpmB IL0241 Ribosomal protein L28chromosome CDS257947 237 + 0.489451
rpmC IL1916 Ribosomal protein L29chromosome CDS2048337 192 - 0.453125
rpmD IL1898 Ribosomal protein L30chromosome CDS2035328 183 - 0.486339
rpmE IL2462 Ribosomal protein L31chromosome CDS2636871 219 + 0.461187
rpmF IL1344 Ribosomal protein L32chromosome CDS1444376 171 - 0.48538
rpmG IL0242 Ribosomal protein L33chromosome CDS258195 156 + 0.384615
rpmH IL2640 Ribosomal protein L34chromosome CDS2839140 135 - 0.481481
rpmI IL1397 Ribosomal protein L35chromosome CDS1500123 198 - 0.464646
rpmJ IL1895 Ribosomal protein L36chromosome CDS2033418 114 - 0.421053
rpsA IL1355 Ribosomal protein S1chromosome CDS1453799 1683 - 0.449792
rpsB IL0845 Ribosomal protein S2chromosome CDS901730 729 - 0.440329
rpsC IL1918 Ribosomal protein S3chromosome CDS2048953 681 - 0.484582
rpsD IL1892 Ribosomal protein S4chromosome CDS2031890 621 - 0.47343
rpsE IL1899 Ribosomal protein S5chromosome CDS2035517 501 - 0.473054
rpsF IL1940 Ribosomal protein S6chromosome CDS2064700 351 - 0.475783
rpsG IL0348 Ribosomal protein S7chromosome CDS362642 471 + 0.473461
rpsH IL1902 Ribosomal protein S8chromosome CDS2036938 393 - 0.463104
rpsI IL0415 Ribosomal protein S9chromosome CDS429992 393 + 0.445293
rpsJ IL1925 Ribosomal protein S10chromosome CDS2052724 312 - 0.490385
rpsK IL1893 Ribosomal protein S11chromosome CDS2032539 390 - 0.505128
rpsL IL0347 Ribosomal protein S12chromosome CDS362195 375 + 0.482667
rpsM IL1894 Ribosomal protein S13chromosome CDS2032941 357 - 0.492997
rpsN IL1903 Ribosomal protein S14chromosome CDS2037357 306 - 0.486928
rpsO IL0965 Ribosomal protein S15chromosome CDS1019506 270 - 0.42963
rpsP IL1726 Ribosomal protein S16chromosome CDS1856451 249 - 0.465863
rpsQ IL1915 Ribosomal protein S17chromosome CDS2048074 264 - 0.458333
rpsR IL1938 Ribosomal protein S18chromosome CDS2064138 228 - 0.425439
rpsS IL1920 Ribosomal protein S19chromosome CDS2049990 279 - 0.46595
rpsT IL1131 Ribosomal protein S20chromosome CDS1212378 261 + 0.452107
rpsU IL2202 Ribosomal protein S21chromosome CDS2353694 216 - 0.481481
rsmC IL0493 16S RNA G1207 methylase RsmCchromosome CDS518551 1005 - 0.480597
sUI1 IL1712 Possible translation initiation factor, Sui1 familychromosome CDS1843549 336 + 0.491071
serS IL0663 Seryl-tRNA synthetasechromosome CDS717536 1293 - 0.4942
sfhB IL1183 Pseudouridylate synthasechromosome CDS1272857 969 - 0.501548
smpA IL0990 Outer membrane lipoprotein OmlA (small protein A)chromosome CDS1048356 351 + 0.413105
spoU IL2375 rRNA methylase SpoUchromosome CDS2546114 648 - 0.479938
srmB IL2131 ATP-dependent RNA helicasechromosome CDS2269668 1230 + 0.495935
sun IL0016 tRNA and rRNA cytosine-C5-methylasechromosome CDS19968 1329 - 0.504138
tgt IL2205 tRNA-guanine transglycosylasechromosome CDS2356239 1122 - 0.495544
thrS IL1399 Threonyl-tRNA synthetasechromosome CDS1500959 1917 - 0.454877
tnsC IL2611 Transposon Tn7 transposition protein tnsCchromosome CDS2810401 1668 - 0.450839
trmA IL2273 tRNA (uracil-5-)-methyltransferasechromosome CDS2438429 1029 + 0.430515
trmD IL1724 tRNA-(guanine-N1)-methyltransferasechromosome CDS1855140 759 - 0.475626
trmU IL1310 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS1407015 1116 + 0.477599
trpS IL2323 Tryptophanyl-tRNA synthetasechromosome CDS2489070 1008 - 0.469246
truA IL1017 Pseudouridylate synthase (tRNA psi55)chromosome CDS1086520 786 - 0.507634
truB IL0966 tRNA pseudouridine 5S synthasechromosome CDS1019873 933 - 0.489818
tsf IL0844 Translation elongation factor Tschromosome CDS900836 879 - 0.459613
tufB_1 IL0338 Translation elongation factor EF-Tuchromosome CDS348574 1185 + 0.496203
tufB_2 IL0350 Translation elongation factor EF-Tuchromosome CDS365324 1185 + 0.496203
tyrS IL2236 Tyrosyl-tRNA synthetasechromosome CDS2391286 1206 - 0.464345
valS IL1950 Valyl-tRNA synthetasechromosome CDS2075023 2850 + 0.483158