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2024-05-07 19:12:53

Gene list

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COG category: Lipid transport and metabolism
Organism: Pseudomonas syringae pv. tomato str. DC3000, DC3000

Number of genes found: 185

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Pseudomonas syringae pv. tomato str. DC3000, DC3000
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSPTO4100 MaoC-like domain proteinchromosome CDS4620529 522 + 0.576628
NA PSPTO0874 nikkomycin biosynthesis domain proteinchromosome CDS943206 1254 + 0.492026
NA PSPTO0893 outer membrane protein P1, putativechromosome CDS972764 1269 + 0.583924
NA PSPTO5200 autotransporter, putativechromosome CDS5917963 2961 + 0.639649
NA PSPTO5511 acetyl-CoA carboxylase, biotin carboxylase, putativechromosome CDS6277474 1416 - 0.588277
NA PSPTO2944 p-hydroxycinnamoyl CoA hydratase/lyasechromosome CDS3307573 831 - 0.592058
NA PSPTO4380 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4941398 759 + 0.57444
NA PSPTO1056 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1152922 765 + 0.579085
NA PSPTO0095 phospholipase D family proteinchromosome CDS115037 1629 - 0.61326
NA PSPTO4546 hypothetical proteinchromosome CDS5135614 240 - 0.5375
NA PSPTO5093 acyl carrier protein, putativechromosome CDS5794585 261 + 0.586207
NA PSPTO3136 acyl carrier protein phosphodiesterasechromosome CDS3525969 609 - 0.594417
NA PSPTO2397 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2646227 765 - 0.640523
NA PSPTO4781 conserved domain proteinchromosome CDS5421139 1014 - 0.584813
NA PSPTO5094 acyl carrier protein, putativechromosome CDS5794849 261 + 0.551724
NA PSPTO1024 phospholipase D family proteinchromosome CDS1117166 1269 + 0.602837
NA PSPTO4243 urea amidolyase-related proteinchromosome CDS4775685 3681 + 0.630807
NA PSPTO2737 enoyl-CoA hydratase/isomerase family proteinchromosome CDS3041110 849 - 0.618375
NA PSPTO5536 CDP-alcohol phosphatidyltransferase family proteinchromosome CDS6304618 618 + 0.621359
NA PSPTO1740 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1908427 741 - 0.620783
NA PSPTO0452 acyltransferase family proteinchromosome CDS495158 900 + 0.587778
NA PSPTO0667 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS720816 771 - 0.566796
NA PSPTO5060 oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptorchromosome CDS5763742 906 + 0.62362
NA PSPTO3857 acyl-CoA dehydrogenase family proteinchromosome CDS4368229 2448 + 0.622141
NA PSPTO0187 hdtS proteinchromosome CDS210455 771 + 0.59144
NA PSPTO2745 acyl-CoA dehydrogenase family proteinchromosome CDS3050066 1230 + 0.622764
NA PSPTO4354 acyltransferase domain proteinchromosome CDS4916993 807 + 0.635688
NA PSPTO5381 biotin carboxylase/biotin carboxyl carrier proteinchromosome CDS6113835 1740 + 0.620115
NA PSPTO1720 outer membrane proteinchromosome CDS1889959 1275 - 0.563922
NA PSPTO2940 thiolase family proteinchromosome CDS3302739 1242 - 0.649758
NA PSPTO3241 phytase domain proteinchromosome CDS3661628 1923 - 0.628185
NA PSPTO1726 hypothetical proteinchromosome CDS1895010 315 - 0.498413
NA PSPTO2677 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2972883 861 + 0.598142
NA PSPTO3073 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3455936 759 + 0.604743
NA PSPTO1861 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2034565 813 - 0.601476
NA PSPTO0569 autotransporting lipase, GDSL familychromosome CDS625342 1923 - 0.614665
NA PSPTO0742 MaoC-like domain proteinchromosome CDS788635 858 - 0.618881
NA PSPTO5489 cytosolic long-chain acyl-CoA thioester hydrolase family proteinchromosome CDS6256348 402 + 0.599503
NA PSPTO2723 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3022420 768 - 0.574219
NA PSPTO2293 esterase/lipase/thioesterase family proteinchromosome CDS2538321 993 + 0.637462
NA PSPTO0744 thiolase family proteinchromosome CDS790987 1278 + 0.63302
NA PSPTO2922 acetyl-CoA carboxylase, biotin carboxyl carrier protein, putativechromosome CDS3285734 438 - 0.593607
NA PSPTO1766 lipasechromosome CDS1936962 1020 - 0.611765
NA PSPTO5096 AMP-binding enzyme family proteinchromosome CDS5795770 1575 + 0.633651
NA PSPTO0305 fatty acid desaturasechromosome CDS331569 1239 - 0.581114
NA PSPTO0506 acyl-CoA dehydrogenase family proteinchromosome CDS553477 1779 + 0.590781
NA PSPTO4517 fatty acid desaturase, putativechromosome CDS5087432 951 + 0.53102
NA PSPTO2985 acyl-CoA dehydrogenase family proteinchromosome CDS3356072 1281 - 0.624512
NA PSPTO2492 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS2755531 801 + 0.617977
NA PSPTO3899 acyltransferase family proteinchromosome CDS4410922 1875 - 0.580267
NA PSPTO5092 acyltransferase family proteinchromosome CDS5793798 813 + 0.628536
NA PSPTO2440 acyl-CoA dehydrogenase family proteinchromosome CDS2693952 1188 + 0.575758
NA PSPTO4349 phospholipase D family proteinchromosome CDS4912598 1158 - 0.621762
NA PSPTO5185 acyl-CoA dehydrogenase family proteinchromosome CDS5901103 1206 + 0.640133
NA PSPTO5108 conserved hypothetical proteinchromosome CDS5808719 456 + 0.627193
NA PSPTO0766 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS814913 726 - 0.596419
NA PSPTO1168 acyltransferase family proteinchromosome CDS1282914 924 - 0.584416
NA PSPTO2736 biotin carboxylase/biotin-containing subunitchromosome CDS3039164 1950 - 0.622564
NA PSPTO1790 acyl-CoA dehydrogenase family proteinchromosome CDS1961852 1194 - 0.659967
NA PSPTO1140 conserved hypothetical proteinchromosome CDS1251599 1164 - 0.598797
NA PSPTO3527 conserved hypothetical protein TIGR00147chromosome CDS3979775 918 - 0.648148
NA PSPTO4200 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4731544 750 - 0.637333
NA PSPTO4082 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4592224 735 + 0.598639
NA PSPTO2335 exopolysaccharide production protein ExoZ, putativechromosome CDS2589210 1071 + 0.583567
NA PSPTO4067 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS4573831 897 - 0.492754
NA PSPTO4513 conserved hypothetical proteinchromosome CDS5083055 474 - 0.575949
NA PSPTO3485 lipase family proteinchromosome CDS3933269 2277 + 0.501098
NA PSPTO5020 acyl-CoA dehydrogenase family proteinchromosome CDS5709754 1803 + 0.591237
NA PSPTO0734 MaoC-like domain proteinchromosome CDS783756 456 - 0.561404
NA PSPTO3163 enoyl-CoA hydratase/isomerase family proteinchromosome CDS3555900 774 - 0.604651
NA PSPTO2439 acyl-CoA dehydrogenase family proteinchromosome CDS2692713 1212 + 0.594885
NA PSPTO2725 SCP-2 sterol transfer family proteinchromosome CDS3024485 318 - 0.559748
NA PSPTO5110 3-oxoacyl-(acyl-carrier-protein) synthase II, putativechromosome CDS5809899 1227 + 0.620212
NA PSPTO5299 conserved hypothetical proteinchromosome CDS6023930 1071 - 0.598506
NA PSPTO2719 enoyl-CoA hydratase/isomerase family proteinchromosome CDS3018617 813 + 0.584256
NA PSPTO1187 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1298852 921 + 0.614549
NA PSPTO1914 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2093986 723 + 0.605809
NA PSPTO3428 conserved domain proteinchromosome CDS3864581 459 + 0.555556
NA PSPTO0500 acyl-CoA dehydrogenase family proteinchromosome CDS546382 1806 + 0.601883
NA PSPTO5461 acyl-CoA dehydrogenase, putativechromosome CDS6220971 1182 - 0.576988
NA PSPTOA0047 endonucleasepDC3000A CDS46510 552 + 0.599638
NA PSPTO2065 enoyl-CoA hydratase/isomerase family proteinchromosome CDS2245666 690 - 0.584058
NA PSPTO0997 acyltransferase family proteinchromosome CDS1087661 2004 - 0.592814
NA PSPTO5109 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS5809171 729 + 0.625514
NA PSPTO0200 conserved hypothetical proteinchromosome CDS222528 1218 - 0.401478
NA PSPTO2396 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2645396 801 - 0.614232
NA PSPTO3282 lipoprotein, putativechromosome CDS3709119 1152 + 0.616319
NA PSPTO3457 short-chain fatty acid transporterchromosome CDS3899457 1419 + 0.631431
NA PSPTO1916 3-oxoacyl-(acyl-carrier-protein) synthase III, putativechromosome CDS2095352 1017 + 0.545723
NA PSPTO3456 3-oxoacid CoA-transferase, subunit B familychromosome CDS3898357 657 + 0.590563
NA PSPTO5382 acyl carrier protein phosphodiesterase, putativechromosome CDS6115993 630 + 0.6
NA PSPTO4094 3-oxoacyl-(acyl-carrier-protein) synthase III, putativechromosome CDS4610578 1122 - 0.592692
NA PSPTO5547 acyltransferase family proteinchromosome CDS6317770 1887 + 0.620032
NA PSPTO2918 conserved hypothetical proteinchromosome CDS3282298 408 - 0.610294
NA PSPTO5081 malonyl CoA-acyl carrier protein transacylase, putativechromosome CDS5785242 936 - 0.655983
NA PSPTO2818 fatty acid desaturasechromosome CDS3142091 1392 - 0.62069
NA PSPTO0743 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS789523 1356 - 0.643068
NA PSPTO1880 3-hydroxyisobutyrate dehydrogenasechromosome CDS2052948 843 + 0.645314
NA PSPTO2734 acetyltransferase family proteinchromosome CDS3037217 1023 + 0.562072
NA PSPTO3809 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4316872 726 - 0.643251
NA PSPTO4831 PAP2 superfamily protein/DedA family proteinchromosome CDS5468838 1317 + 0.645406
NA PSPTO2097 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2266931 750 - 0.630667
NA PSPTO1183 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1295825 711 - 0.600563
NA PSPTO1000 CDP-alcohol phosphatidyltransferase family proteinchromosome CDS1091889 720 - 0.579167
NA PSPTO4843 esterase/lipase/thioesterase family proteinchromosome CDS5483479 909 + 0.59516
NA PSPTO2939 hypothetical proteinchromosome CDS3302230 513 - 0.54386
NA PSPTO1119 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1232891 789 - 0.61597
NA PSPTO2843 conserved hypothetical proteinchromosome CDS3194491 384 + 0.557292
NA PSPTO5520 cytosolic long-chain acyl-CoA thioester hydrolase family proteinchromosome CDS6287926 486 + 0.567901
NA PSPTO5540 acyltransferase, putativechromosome CDS6308865 621 + 0.621578
NA PSPTO1948 3-oxoacyl-(acyl-carrier-protein) synthase III, putativechromosome CDS2134726 927 + 0.542611
NA PSPTO5107 3-oxoacyl-(acyl-carrier-protein) synthase II, putativechromosome CDS5807526 1197 + 0.643275
NA PSPTO4277 esterase/lipase/thioesterase family proteinchromosome CDS4818257 834 + 0.571942
NA PSPTO2758 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3073084 747 + 0.605087
NA PSPTO4263 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4802393 774 - 0.542636
NA PSPTO5538 dual specificity phosphatase, catalytic domain proteinchromosome CDS6307022 1356 + 0.60767
NA PSPTO2991 conserved hypothetical proteinchromosome CDS3362402 1359 - 0.6078
NA PSPTO1913 conserved hypothetical proteinchromosome CDS2093596 297 + 0.531987
NA PSPTO2738 carboxyl transferase domain proteinchromosome CDS3041973 1608 - 0.617537
NA PSPTO5184 acyl-CoA dehydrogenase family proteinchromosome CDS5899755 1323 + 0.621315
NA PSPTO2949 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3313545 768 - 0.617188
NA PSPTO3054 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3435263 732 + 0.607924
NA PSPTO3455 3-oxoacid CoA-transferase, subunit A familychromosome CDS3897610 702 + 0.571225
NA PSPTO3131 conserved hypothetical proteinchromosome CDS3521488 1014 + 0.641026
NA PSPTO2739 acyl-CoA dehydrogenase, putativechromosome CDS3043594 1344 - 0.601935
NA PSPTO3705 enoly-CoA hydratase/isomerase family proteinchromosome CDS4179326 1098 + 0.607468
NA PSPTO1627 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1783328 816 + 0.596814
NA PSPTO1223 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1340384 819 - 0.622711
NA PSPTO5067 4-hydroxybenzoyl-CoA thioesterase domain proteinchromosome CDS5770690 396 - 0.580808
NA PSPTO4201 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4732325 762 - 0.656168
NA PSPTO3503 cardiolipin synthetase 2chromosome CDS3955740 1251 - 0.592326
NA PSPTO2992 acyl-CoA dehydrogenase family proteinchromosome CDS3363774 1239 + 0.615819
accA PSPTO1550 acetyl-CoA carboxylase, carboxyl transferase, alpha subunitchromosome CDS1712034 948 + 0.590717
accB PSPTO4860 acetyl-CoA carboxylase, biotin carboxyl carrier proteinchromosome CDS5505070 456 + 0.58114
accC-1 PSPTO2921 acetyl-CoA carboxylase, biotin carboxylasechromosome CDS3284341 1353 - 0.621582
accC-2 PSPTO4861 acetyl-CoA carboxylase, biotin carboxylasechromosome CDS5505543 1344 + 0.593006
accD PSPTO3815 acetyl-CoA carboxylase, carboxyl transferase, beta subunitchromosome CDS4323081 921 - 0.600434
acdA PSPTO3706 acyl-CoA dehydrogenasechromosome CDS4180427 1152 + 0.605035
acpP PSPTO3831 acyl carrier proteinchromosome CDS4339190 237 - 0.510549
acs PSPTO1825 acetyl-CoA synthetasechromosome CDS1992395 1956 + 0.625256
alkK PSPTO1148 medium-chain-fatty-acid--CoA ligasechromosome CDS1257917 1683 + 0.585859
catF PSPTO4307 3-oxoadipyl-CoA thiolasechromosome CDS4857791 1200 - 0.650833
catI PSPTO4309 3-oxoadipate:succinyl-CoA transferase, subunit Achromosome CDS4859769 858 - 0.59324
catJ PSPTO4308 3-oxoadipate:succinyl-CoA transferase, subunit Bchromosome CDS4858990 780 - 0.623077
cdsA-1 PSPTO1539 phosphatidate cytidylyltransferasechromosome CDS1697629 816 + 0.604167
cfa1 PSPTO4681 coronafacic acid synthetase, acyl carrier protein componentchromosome CDS5284213 252 + 0.587302
cfa2 PSPTO4682 coronafacic acid synthetase, dehydratase componentchromosome CDS5284476 498 + 0.620482
cfa3 PSPTO4683 coronafacic acid beta-ketoacyl synthetase componentchromosome CDS5284967 1146 + 0.670157
cfa5 PSPTO4685 coronafacic acid synthetase, ligase componentchromosome CDS5286639 1419 + 0.649049
cfl PSPTO4680 coronafacic acid synthetase, ligase componentchromosome CDS5282597 1530 + 0.624183
cls PSPTO5530 cardiolipin synthetasechromosome CDS6295809 1440 + 0.609722
dxr PSPTO1540 1-deoxy-D-xylulose 5-phosphate reductoisomerasechromosome CDS1698441 1191 + 0.609572
dxs PSPTO0698 deoxyxylulose-5-phosphate synthasechromosome CDS750560 1896 - 0.616561
fabA PSPTO2211 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabAchromosome CDS2436140 516 - 0.579457
fabB PSPTO2210 3-oxoacyl-(acyl-carrier-protein) synthase Ichromosome CDS2434906 1224 - 0.602941
fabD PSPTO3833 malonyl CoA-acyl carrier protein transacylasechromosome CDS4340378 939 - 0.620873
fabF PSPTO3830 3-oxoacyl-(acyl-carrier-protein) synthase IIchromosome CDS4337832 1245 - 0.613655
fabG PSPTO3832 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS4339619 744 - 0.567204
fabI PSPTO3721 enoyl-(acyl-carrier-protein) reductasechromosome CDS4200823 795 + 0.620126
fabZ PSPTO1545 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZchromosome CDS1705293 441 + 0.528345
fadA PSPTO3516 3-ketoacyl-CoA thiolasechromosome CDS3966542 1176 - 0.597789
fadB PSPTO3517 fatty oxidation complex, alpha subunitchromosome CDS3967722 2166 - 0.580794
fadD-1 PSPTO4097 long-chain-fatty-acid--CoA ligasechromosome CDS4616449 1692 - 0.576832
fadD-2 PSPTO4098 long-chain-fatty-acid--CoA ligasechromosome CDS4618496 1689 - 0.587922
fcs PSPTO2941 feruloyl-CoA-synthetasechromosome CDS3303977 1770 - 0.621469
ispD PSPTO1556 4-diphosphocytidyl-2C-methyl-D-erythritolsynthas echromosome CDS1719132 711 + 0.627286
ispE PSPTO1105 4-diphosphocytidyl-2C-methyl-D-erythritol kinasechromosome CDS1219609 849 - 0.54417
ispF PSPTO1560 2C-methyl-D-erythritol 2,4-cyclodiphosphatechromosome CDS1722961 474 + 0.594937
ispG PSPTO1434 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthasechromosome CDS1571550 1110 + 0.595496
ispH PSPTO0809 hydroxymethylbutenyl pyrophosphate reductasechromosome CDS874305 948 + 0.619198
mdcA PSPTO5087 malonate decarboxylase, alpha subunitchromosome CDS5789623 1677 - 0.625522
mdcD PSPTO5084 malonate decarboxylase, beta subunitchromosome CDS5787603 852 - 0.630282
mmsB PSPTO0783 3-hydroxyisobutyrate dehydrogenasechromosome CDS848110 891 + 0.619529
nuc PSPTO_B0054 endonucleasepDC3000B CDS41772 510 + 0.594118
pgsA PSPTO3022 CDP-diacylglycerol--glycerol-3-phosphate3-phosph atidyltransferasechromosome CDS3397895 567 - 0.567901
phaC PSPTO5145 poly(3-hydroxyalkanoate) polymerasechromosome CDS5856501 1692 + 0.621749
phbA-1 PSPTO0957 acetyl-CoA acetyltransferasechromosome CDS1038333 1179 - 0.636132
phbA-2 PSPTO3164 acetyl-CoA acetyltransferasechromosome CDS3556756 1209 - 0.632754
plsB PSPTO1520 glycerol-3-phosphate acyltransferasechromosome CDS1675061 2502 - 0.600719
plsX PSPTO3834 fatty acid/phospholipid synthesis protein PlsXchromosome CDS4341433 993 - 0.602216
polS PSPTO0363 sorbitol dehydrogenasechromosome CDS397298 774 - 0.603359
pssA-1 PSPTO0984 CDP-diacylglycerol--serineO-phosphatidyltransferasechromosome CDS1069018 852 + 0.592723
pssA-2 PSPTO3463 CDP-diacylglycerol--serineO-phosphatidyltransferasechromosome CDS3906829 1344 + 0.605655
tesB PSPTO4660 acyl-CoA thioesterase IIchromosome CDS5263710 870 - 0.606897
uppS PSPTO1538 undecaprenyl diphosphate synthasechromosome CDS1696874 756 + 0.603175