Gene list
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COG category: Lipid transport and metabolism
Organism: Thiobacillus denitrificans ATCC 25259, ATCC 25259
Number of genes found: 70
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Thiobacillus denitrificans ATCC 25259, ATCC 25259 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | Tbd_0190 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 202715 | 783 | + | 0.591315 |
NA | Tbd_1968 | Anti-Sigm factor, ChrR | SubName: Full=Anti-Sigm factor, ChrR; | chromosome | CDS | 2059837 | 453 | - | 0.690949 |
NA | Tbd_2746 | conserved hypothetical protein, potential CoA ligase (AMP forming) | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2825666 | 1332 | + | 0.738739 |
NA | Tbd_2183 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2266331 | 453 | - | 0.708609 |
NA | Tbd_0194 | hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 205485 | 858 | - | 0.658508 |
NA | Tbd_1004 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | RecName: Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Short=MECDP-synthase; Short=MECPP-synthase; Short=MECPS; EC=4.6.1.12; | chromosome | CDS | 1072174 | 483 | + | 0.68323 |
NA | Tbd_1051 | phospholipase D/Transphosphatidylase | SubName: Full=Phospholipase D/Transphosphatidylase; | chromosome | CDS | 1115528 | 1260 | - | 0.63254 |
NA | Tbd_1699 | probable oxidoreductase | SubName: Full=Probable oxidoreductase; Flags: Precursor; | chromosome | CDS | 1790529 | 744 | + | 0.688172 |
NA | Tbd_1469 | short-chain dehydrogenase/reductase | SubName: Full=Short-chain dehydrogenase/reductase; | chromosome | CDS | 1553511 | 705 | - | 0.676596 |
NA | Tbd_0789 | di-trans-poly-cis-decaprenylcistransferase | RecName: Full=Isoprenyl transferase; EC=2.5.1.-; | chromosome | CDS | 831628 | 738 | + | 0.654472 |
NA | Tbd_1755 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1846568 | 435 | - | 0.588506 |
NA | Tbd_2785 | oxidoreductase, short-chain dehydrogenase/reductase family | SubName: Full=Oxidoreductase, short-chain dehydrogenase/reductase family; | chromosome | CDS | 2866289 | 765 | + | 0.703268 |
NA | Tbd_0976 | putative protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 1040896 | 510 | - | 0.631373 |
NA | Tbd_0791 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | RecName: Full=1-deoxy-D-xylulose 5-phosphate reductoisomerase; Short=DXP reductoisomerase; EC=1.1.1.267; AltName: Full=1-deoxyxylulose-5-phosphate reductoisomerase; AltName: Full=2-C-methyl-D-erythritol 4-phosphate synthase; Flags: Precursor; | chromosome | CDS | 833188 | 1185 | + | 0.691983 |
NA | Tbd_1549 | 3-oxoacyl-(acyl-carrier-protein) reductase | SubName: Full=3-oxoacyl-(Acyl-carrier-protein) reductase; | chromosome | CDS | 1633307 | 771 | - | 0.674449 |
NA | Tbd_1488 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1575949 | 1050 | + | 0.602857 |
NA | Tbd_1672 | enoyl-(acyl-carrier-protein) reductase (NADH) | RecName: Full=Enoyl-[acyl-carrier-protein] reductase [NADH]; EC=1.3.1.9; | chromosome | CDS | 1757864 | 855 | + | 0.630409 |
NA | Tbd_0504 | acetate--CoA ligase | RecName: Full=Acetyl-coenzyme A synthetase; Short=AcCoA synthetase; Short=Acs; EC=6.2.1.1; AltName: Full=Acetate--CoA ligase; AltName: Full=Acyl-activating enzyme; | chromosome | CDS | 528664 | 1968 | + | 0.667683 |
NA | Tbd_1988 | phosphatidylserine decarboxylase | RecName: Full=Phosphatidylserine decarboxylase proenzyme; EC=4.1.1.65; Contains: RecName: Full=Phosphatidylserine decarboxylase alpha chain; Contains: RecName: Full=Phosphatidylserine decarboxylase beta chain; | chromosome | CDS | 2078862 | 627 | - | 0.645933 |
NA | Tbd_2701 | short-chain dehydrogenase/reductase (SDR) superfamily | SubName: Full=Short-chain dehydrogenase/reductase (SDR) superfamily; | chromosome | CDS | 2783411 | 741 | - | 0.665317 |
NA | Tbd_0588 | acetyl-CoA carboxylase, alpha subunit | RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Short=ACCase subunit alpha; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha; EC=6.4.1.2; | chromosome | CDS | 616878 | 969 | + | 0.642931 |
NA | Tbd_0728 | Holo-acyl carrier protein synthase | RecName: Full=Holo-[acyl-carrier-protein] synthase; Short=Holo-ACP synthase; EC=2.7.8.7; AltName: Full=4-phosphopantetheinyl transferase AcpS; | chromosome | CDS | 770683 | 396 | - | 0.704545 |
NA | Tbd_1396 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1477007 | 366 | + | 0.672131 |
NA | Tbd_2007 | CDP-diacylglycerol--glycerol-3-phosphate3-phosph atidyltransferase | SubName: Full=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; | chromosome | CDS | 2094362 | 594 | - | 0.691919 |
NA | Tbd_0594 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | RecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; EC=1.17.7.1; AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; | chromosome | CDS | 622478 | 1224 | + | 0.683007 |
NA | Tbd_1987 | CDP-diacylglycerol--serineO-phosphatidyltransferase | SubName: Full=CDP-diacylglycerol--serine O-phosphatidyltransferase; EC=2.7.8.8; | chromosome | CDS | 2077979 | 789 | - | 0.642586 |
NA | Tbd_0734 | putative short chain dehydrogenase | SubName: Full=Putative short chain dehydrogenase; | chromosome | CDS | 777404 | 729 | - | 0.696845 |
NA | Tbd_0446 | phospholipase D/Transphosphatidylase | SubName: Full=Phospholipase D/Transphosphatidylase; | chromosome | CDS | 465871 | 1191 | + | 0.664148 |
NA | Tbd_0081 | 2-hydroxy-3-oxopropionate reductase | SubName: Full=2-hydroxy-3-oxopropionate reductase; EC=1.1.1.60; | chromosome | CDS | 83363 | 879 | - | 0.664391 |
NA | Tbd_2243 | phospholipase D/Transphosphatidylase | SubName: Full=Phospholipase D/Transphosphatidylase; Flags: Precursor; | chromosome | CDS | 2317918 | 1443 | + | 0.668053 |
NA | Tbd_0169 | phospholipid/glycerol acyltransferase | SubName: Full=Phospholipid/glycerol acyltransferase; | chromosome | CDS | 182911 | 822 | - | 0.70073 |
NA | Tbd_2747 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2826994 | 318 | + | 0.732704 |
NA | Tbd_0924 | 3-oxoacyl-(acyl-carrier protein) reductase | SubName: Full=3-oxoacyl-(Acyl-carrier protein) reductase; | chromosome | CDS | 978929 | 783 | - | 0.671775 |
NA | Tbd_2756 | 3-oxoacyl-(ACP) reductase | SubName: Full=3-oxoacyl-(ACP) reductase; Flags: Precursor; | chromosome | CDS | 2835200 | 720 | + | 0.7 |
NA | Tbd_2194 | phosphatidylglycerophosphatase A | RecName: Full=Phosphatidylglycerophosphatase A; EC=3.1.3.27; AltName: Full=Phosphatidylglycerolphosphate phosphatase A; | chromosome | CDS | 2275135 | 480 | + | 0.695833 |
NA | Tbd_1696 | putative phytoene synthase-like protein | SubName: Full=Putative phytoene synthase-like protein; | chromosome | CDS | 1787568 | 846 | + | 0.647754 |
NA | Tbd_1548 | Acyl carrier protein (ACP) | RecName: Full=Acyl carrier protein; Short=ACP; | chromosome | CDS | 1632987 | 234 | - | 0.568376 |
NA | Tbd_0386 | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase | RecName: Full=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Short=CMK; EC=2.7.1.148; AltName: Full=4-(cytidine-5-diphospho)-2-C-methyl-D-erythritol kinase; | chromosome | CDS | 414539 | 837 | + | 0.679809 |
NA | Tbd_1547 | 3-oxoacyl-(acyl-carrier-protein) synthase I/II | RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2; EC=2.3.1.179; | chromosome | CDS | 1631554 | 1233 | - | 0.641525 |
NA | Tbd_0796 | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ | RecName: Full=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; EC=4.2.1.59; AltName: Full=(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Short=(3R)-hydroxymyristoyl-ACP dehydrase; AltName: Full=Beta-hydroxyacyl-ACP dehydratase; | chromosome | CDS | 839602 | 438 | + | 0.614155 |
NA | Tbd_1117 | acyl carrier protein phosphodiesterase | RecName: Full=FMN-dependent NADH-azoreductase; EC=1.7.-.-; AltName: Full=Azo-dye reductase; AltName: Full=FMN-dependent NADH-azo compound oxidoreductase; | chromosome | CDS | 1173738 | 651 | + | 0.671275 |
NA | Tbd_2776 | putative transporter protein | SubName: Full=Putative transporter protein; Flags: Precursor; | chromosome | CDS | 2856286 | 1155 | - | 0.645887 |
NA | Tbd_2744 | acyl carrier protein, putative | SubName: Full=Acyl carrier protein, putative; | chromosome | CDS | 2824727 | 270 | + | 0.614815 |
NA | Tbd_1550 | malonyl CoA-acyl carrier protein transacylase | RecName: Full=Malonyl CoA-acyl carrier protein transacylase; EC=2.3.1.39; | chromosome | CDS | 1634088 | 933 | - | 0.6806 |
NA | Tbd_1474 | phospholipase D/Transphosphatidylase | SubName: Full=Phospholipase D/Transphosphatidylase; | chromosome | CDS | 1559811 | 2145 | - | 0.686247 |
NA | Tbd_0879 | deoxyxylulose-5-phosphate synthase | RecName: Full=1-deoxy-D-xylulose-5-phosphate synthase; EC=2.2.1.7; AltName: Full=1-deoxyxylulose-5-phosphate synthase; Short=DXP synthase; Short=DXPS; | chromosome | CDS | 928492 | 1857 | - | 0.691438 |
NA | Tbd_1305 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 1383467 | 1026 | - | 0.734893 |
NA | Tbd_1886 | possible oxo-acyl acyl carrier protein dehydrogenase | SubName: Full=Possible oxo-acyl acyl carrier protein dehydrogenase; Flags: Precursor; | chromosome | CDS | 1985170 | 729 | - | 0.556927 |
NA | Tbd_1555 | acetyl-CoA carboxylase, biotin carboxylase | SubName: Full=Acetyl-CoA carboxylase, biotin carboxylase; | chromosome | CDS | 1637955 | 1419 | + | 0.630726 |
NA | Tbd_2753 | probable 3-oxoacyl-(acyl-carrier-protein) synthase | SubName: Full=Probable 3-oxoacyl-(Acyl-carrier-protein) synthase; | chromosome | CDS | 2832708 | 1221 | + | 0.727273 |
NA | Tbd_1551 | Beta-ketoacyl-acyl carrier protein synthase III (FabH) | RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 3; EC=2.3.1.180; AltName: Full=3-oxoacyl-[acyl-carrier-protein] synthase III; AltName: Full=Beta-ketoacyl-ACP synthase III; Short=KAS III; | chromosome | CDS | 1635189 | 960 | - | 0.659375 |
NA | Tbd_2596 | long chain fatty acid transport protein | SubName: Full=Long chain fatty acid transport protein; Flags: Precursor; | chromosome | CDS | 2671609 | 1218 | - | 0.669951 |
NA | Tbd_2597 | long-chain fatty-acid-CoA ligase | SubName: Full=Long-chain fatty-acid-CoA ligase; | chromosome | CDS | 2672853 | 1809 | - | 0.693753 |
NA | Tbd_1697 | putative terpenoid synthase | SubName: Full=Putative terpenoid synthase; Flags: Precursor; | chromosome | CDS | 1788416 | 846 | + | 0.684397 |
NA | Tbd_0182 | acetyl-CoA biotin carboxyl carrier | SubName: Full=Acetyl-CoA biotin carboxyl carrier; | chromosome | CDS | 195274 | 450 | - | 0.633333 |
NA | Tbd_2180 | putative Long-chain fatty acid transport protein | SubName: Full=Putative Long-chain fatty acid transport protein; Flags: Precursor; | chromosome | CDS | 2263034 | 1146 | - | 0.63438 |
NA | Tbd_2760 | phospholipid/glycerol acyltransferase | SubName: Full=Phospholipid/glycerol acyltransferase; | chromosome | CDS | 2838833 | 831 | - | 0.684717 |
NA | Tbd_0576 | putative long-chain fatty acid transport protein | SubName: Full=Putative long-chain fatty acid transport protein; Flags: Precursor; | chromosome | CDS | 604484 | 1203 | + | 0.581047 |
NA | Tbd_0181 | acetyl-CoA carboxylase, biotin carboxylase | SubName: Full=Acetyl-CoA carboxylase, biotin carboxylase; | chromosome | CDS | 193851 | 1350 | - | 0.651111 |
NA | Tbd_1482 | CDP-diacylglycerol-serineo-phosphatidyltransferase | SubName: Full=CDP-diacylglycerol-serine o-phosphatidyltransferase; | chromosome | CDS | 1570033 | 621 | + | 0.674718 |
NA | Tbd_0700 | CDP-diacylglycerol--glycerol-3-phosphate3-phosph atidyltransferase | SubName: Full=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; EC=2.7.8.5; | chromosome | CDS | 741440 | 567 | - | 0.661376 |
NA | Tbd_1003 | 4-diphosphocytidyl-2C-methyl-D-erythritolsynthas e | RecName: Full=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC=2.7.7.60; AltName: Full=4-diphosphocytidyl-2C-methyl-D-erythritol synthase; AltName: Full=MEP cytidylyltransferase; Short=MCT; | chromosome | CDS | 1071480 | 702 | + | 0.67094 |
NA | Tbd_2345 | phospholipid/glycerol acyltransferase | SubName: Full=Phospholipid/glycerol acyltransferase; Flags: Precursor; | chromosome | CDS | 2418791 | 723 | - | 0.676349 |
NA | Tbd_1799 | long-chain fatty acid transport protein | SubName: Full=Long-chain fatty acid transport protein; Flags: Precursor; | chromosome | CDS | 1900631 | 1368 | - | 0.554094 |
NA | Tbd_1860 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, LytB protein | RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; | chromosome | CDS | 1954347 | 927 | + | 0.642934 |
NA | Tbd_1912 | acetyl-CoA carboxylase carboxyl transferase, beta subunit | RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Short=ACCase subunit beta; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta; EC=6.4.1.2; | chromosome | CDS | 2008026 | 867 | - | 0.66436 |
NA | Tbd_2672 | putative RpfF protein | SubName: Full=Putative RpfF protein; | chromosome | CDS | 2747424 | 903 | - | 0.58804 |
NA | Tbd_1552 | fatty acid synthesis plsX protein | RecName: Full=Phosphate acyltransferase; EC=2.3.1.n2; AltName: Full=Acyl-ACP phosphotransacylase; AltName: Full=Acyl-[acyl-carrier-protein]--phosphate acyltransferase; AltName: Full=Phosphate-acyl-ACP acyltransferase; | chromosome | CDS | 1636145 | 1020 | - | 0.65098 |
NA | Tbd_2594 | fatty acid desaturase | SubName: Full=Fatty acid desaturase; | chromosome | CDS | 2669097 | 1173 | - | 0.653026 |
NA | Tbd_0790 | phosphatidate cytidylyltransferase | RecName: Full=Phosphatidate cytidylyltransferase; EC=2.7.7.41; Flags: Precursor; | chromosome | CDS | 832385 | 807 | + | 0.70632 |