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2024-05-17 12:40:04

Gene list

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COG category: Lipid transport and metabolism
Organism: Shigella sonnei Ss046, Ss046

Number of genes found: 93

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Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SSO_3042 putative enzymeRecName: Full=Isopentenyl-diphosphate Delta-isomerase; Short=IPP isomerase; EC=5.3.3.2; AltName: Full=IPP:DMAPP isomerase; AltName: Full=Isopentenyl pyrophosphate isomerase; chromosome CDS3202872 549 + 0.504554
NA SSO_2136 conserved hypothetical proteinRecName: Full=Probable lipid kinase YegS; EC=2.7.1.-; chromosome CDS2240890 900 + 0.496667
NA SSO_3026 putative synthasesSubName: Full=Putative synthases; chromosome CDS3182128 1626 - 0.522755
NA SSO_2230 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2341615 750 + 0.434667
NA SSO_2398 putative acyltransferaseRecName: Full=3-ketoacyl-CoA thiolase; EC=2.3.1.16; AltName: Full=ACSs; AltName: Full=Acetyl-CoA acyltransferase; AltName: Full=Acyl-CoA ligase; AltName: Full=Beta-ketothiolase; AltName: Full=Fatty acid oxidation complex subunit beta; chromosome CDS2531001 1311 - 0.559115
NA SSO_2397 putative enzymeRecName: Full=Fatty acid oxidation complex subunit alpha; Includes: RecName: Full=Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; EC=4.2.1.17; EC=5.1.2.3; Includes: RecName: Full=3-hydroxyacyl-CoA dehydrogenase; EC=1.1.1.35; chromosome CDS2528857 2145 - 0.519814
NA SSO_2884 putative dehydrogenaseSubName: Full=Putative dehydrogenase; chromosome CDS3025073 909 + 0.532453
NA SSO_2744 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2902601 477 + 0.467505
aas SSO_2996 2-acyl-glycerophospho-ethanolamine acyltransferase; acyl-acyl-carrier protein synthetaseRecName: Full=Bifunctional protein Aas; Includes: RecName: Full=2-acylglycerophosphoethanolamine acyltransferase; EC=2.3.1.40; AltName: Full=2-acyl-GPE acyltransferase; AltName: Full=Acyl-[acyl-carrier-protein]--phospholipid O-acyltransferase; Includes: RecName: Full=Acyl-[acyl-carrier-protein] synthetase; EC=6.2.1.20; AltName: Full=Acyl-ACP synthetase; AltName: Full=Long-chain-fatty-acid--[acyl-carrier-protein] ligase; chromosome CDS3146177 2160 - 0.526389
accA SSO_0197 acetylCoA carboxylase, carboxytransferase component, alpha subunitRecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Short=ACCase subunit alpha; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha; EC=6.4.1.2; chromosome CDS223542 960 + 0.526042
accB SSO_3396 acetylCoA carboxylase, BCCP subunitSubName: Full=AcetylCoA carboxylase, BCCP subunit; chromosome CDS3578223 471 + 0.518047
accC SSO_3397 acetyl CoA carboxylase, biotin carboxylase subunitSubName: Full=Acetyl CoA carboxylase, biotin carboxylase subunit; chromosome CDS3578704 1350 + 0.534074
accD SSO_2374 acetylCoA carboxylase, carboxytransferase component, beta subunitRecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Short=ACCase subunit beta; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta; EC=6.4.1.2; chromosome CDS2504780 915 - 0.551913
acp SSO_P086 AcpSubName: Full=Acp; pSS_046 CDS80158 237 - 0.295359
acpD SSO_1734 acyl carrier protein phosphodiesteraseRecName: Full=FMN-dependent NADH-azoreductase; EC=1.7.-.-; AltName: Full=Azo-dye reductase; AltName: Full=FMN-dependent NADH-azo compound oxidoreductase; chromosome CDS1837533 606 + 0.519802
acpP SSO_1114 acyl carrier proteinRecName: Full=Acyl carrier protein; Short=ACP; chromosome CDS1192906 237 + 0.481013
acpS SSO_2687 CoA:apo-[acyl-carrier-protein]pantetheinephospho transferaseRecName: Full=Holo-[acyl-carrier-protein] synthase; Short=Holo-ACP synthase; EC=2.7.8.7; AltName: Full=4-phosphopantetheinyl transferase AcpS; chromosome CDS2845683 381 - 0.503937
acs SSO_4250 acetyl-CoA synthetaseRecName: Full=Acetyl-coenzyme A synthetase; Short=AcCoA synthetase; Short=Acs; EC=6.2.1.1; AltName: Full=Acetate--CoA ligase; AltName: Full=Acyl-activating enzyme; chromosome CDS4511407 1959 - 0.568147
aidB SSO_4369 putative acyl coenzyme A dehydrogenaseSubName: Full=Putative acyl coenzyme A dehydrogenase; chromosome CDS4639509 1641 + 0.542352
atoA SSO_2281 acetyl-CoA:acetoacetyl-CoA transferase beta subunitSubName: Full=Acetyl-CoA:acetoacetyl-CoA transferase beta subunit; chromosome CDS2399082 651 + 0.534562
atoB SSO_2283 acetyl-CoA acetyltransferaseSubName: Full=Acetyl-CoA acetyltransferase; chromosome CDS2401082 1185 + 0.529114
atoD SSO_2280 acetyl-CoA:acetoacetyl-CoA transferase alpha subunitSubName: Full=Acetyl-CoA:acetoacetyl-CoA transferase alpha subunit; chromosome CDS2398420 663 + 0.538462
atoE SSO_2282 short chain fatty acid transporterSubName: Full=Short chain fatty acid transporter; chromosome CDS2399729 1323 + 0.528345
caiA SSO_0047 probable carnitine operon oxidoreductaseRecName: Full=Crotonobetainyl-CoA dehydrogenase; EC=1.3.99.-; AltName: Full=Crotonobetainyl-CoA reductase; chromosome CDS48576 1143 - 0.538933
caiC SSO_0043 probable crotonobetaine/carnitine-CoA ligaseRecName: Full=Probable crotonobetaine/carnitine-CoA ligase; EC=6.2.1.-; chromosome CDS44336 1569 - 0.511791
caiD SSO_0042 carnitine racemaseRecName: Full=Carnitinyl-CoA dehydratase; EC=4.2.1.149; AltName: Full=Crotonobetainyl-CoA hydratase; chromosome CDS43442 894 - 0.526846
cdh SSO_4087 CDP-diacylglycerol phosphotidylhydrolaseRecName: Full=CDP-diacylglycerol pyrophosphatase; EC=3.6.1.26; AltName: Full=CDP-diacylglycerol phosphatidylhydrolase; AltName: Full=CDP-diglyceride hydrolase; chromosome CDS4323971 756 + 0.484127
cdsA SSO_0187 CDP-diglyceride synthetaseRecName: Full=Phosphatidate cytidylyltransferase; EC=2.7.7.41; chromosome CDS210706 750 + 0.502667
cls SSO_1931 cardiolipin synthase, a major membrane phospholipid; novobiocin sensitivityRecName: Full=Cardiolipin synthase A; Short=CL synthase; EC=2.7.8.-; chromosome CDS2027644 1461 + 0.516085
csgE SSO_1048 curli production assembly/transport component, 2nd curli operonSubName: Full=Curli production assembly/transport component, 2nd curli operon; chromosome CDS1129783 390 - 0.430769
dxs SSO_0397 1-deoxyxylulose-5-phosphate synthase; flavoproteinRecName: Full=1-deoxy-D-xylulose-5-phosphate synthase; EC=2.2.1.7; AltName: Full=1-deoxyxylulose-5-phosphate synthase; Short=DXP synthase; Short=DXPS; chromosome CDS423284 1863 - 0.543747
entA SSO_0547 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesisSubName: Full=2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis; chromosome CDS588082 747 + 0.575636
fabA SSO_0958 beta-hydroxydecanoyl thioester dehydrase, trans-2-decenoyl-ACP isomeraseRecName: Full=3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; EC=4.2.1.59; AltName: Full=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA; AltName: Full=Beta-hydroxydecanoyl thioester dehydrase; AltName: Full=Trans-2-decenoyl-[acyl-carrier-protein] isomerase; EC=5.3.3.14; chromosome CDS1034045 519 - 0.522158
fabB SSO_2381 3-oxoacyl-[acyl-carrier-protein] synthase ISubName: Full=3-oxoacyl-[acyl-carrier-protein] synthase I; chromosome CDS2512163 1221 - 0.562654
fabD SSO_1112 malonyl-CoA-[acyl-carrier-protein] transacylaseRecName: Full=Malonyl CoA-acyl carrier protein transacylase; EC=2.3.1.39; chromosome CDS1191019 930 + 0.550538
fabF SSO_1115 3-oxoacyl-[acyl-carrier-protein] synthase IIRecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2; EC=2.3.1.179; chromosome CDS1193230 1242 + 0.533011
fabG SSO_1113 3-oxoacyl-[acyl-carrier-protein] reductaseSubName: Full=3-oxoacyl-[acyl-carrier-protein] reductase; chromosome CDS1191961 735 + 0.517007
fabH SSO_1111 3-oxoacyl-[acyl-carrier-protein] synthase IIIRecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 3; EC=2.3.1.180; AltName: Full=3-oxoacyl-[acyl-carrier-protein] synthase III; AltName: Full=Beta-ketoacyl-ACP synthase III; Short=KAS III; chromosome CDS1190050 954 + 0.548218
fabI SSO_1852 enoyl-[acyl-carrier-protein] reductase (NADH)RecName: Full=Enoyl-[acyl-carrier-protein] reductase [NADH]; EC=1.3.1.9; chromosome CDS1948494 789 + 0.532319
fabZ SSO_0192 (3R)-hydroxymyristol acyl carrier protein dehydrataseRecName: Full=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; EC=4.2.1.59; AltName: Full=(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Short=(3R)-hydroxymyristoyl-ACP dehydrase; AltName: Full=Beta-hydroxyacyl-ACP dehydratase; chromosome CDS217022 456 + 0.504386
fadA SSO_4018 thiolase IRecName: Full=3-ketoacyl-CoA thiolase; EC=2.3.1.16; AltName: Full=Acetyl-CoA acyltransferase; AltName: Full=Beta-ketothiolase; AltName: Full=Fatty acid oxidation complex subunit beta; chromosome CDS4244863 1164 - 0.584192
fadB SSO_4019 3-hydroxyacyl-CoAdehydrogenase/3-hydroxybutyryl- CoAepimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydrataseRecName: Full=Fatty acid oxidation complex subunit alpha; Includes: RecName: Full=Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; EC=4.2.1.17; EC=5.1.2.3; EC=5.3.3.8; Includes: RecName: Full=3-hydroxyacyl-CoA dehydrogenase; EC=1.1.1.35; chromosome CDS4246036 2190 - 0.552968
fadD SSO_1356 acyl-CoA synthetaseSubName: Full=Acyl-CoA synthetase; chromosome CDS1430364 1686 + 0.511862
fadL SSO_2400 transport of long-chain fatty acids; sensitivity to phage T2SubName: Full=Transport of long-chain fatty acids sensitivity to phage T2; chromosome CDS2533141 1347 + 0.500371
gcpE SSO_2597 conserved hypothetical proteinRecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; EC=1.17.7.1; AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; chromosome CDS2744228 1119 - 0.534406
hcaB SSO_2623 2,3-dihydroxy-2,3-dihydrophenylpropionatedehydro genaseRecName: Full=3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase; EC=1.3.1.87; AltName: Full=2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; AltName: Full=3-(cis-5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate dehydrogenase; AltName: Full=CI-dihydrodiol dehydrogenase; AltName: Full=Cis-3-(2-carboxyethenyl)-3,5-cyclohexadiene-1,2-diol dehydrogenase; AltName: Full=Cis-3-(2-carboxyethyl)-3,5-cyclohexadiene-1,2-diol dehydrogenase; AltName: Full=PP-dihydrodiol dehydrogenase; chromosome CDS2774417 813 + 0.562116
hdhA SSO_1541 NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acidsSubName: Full=NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids; chromosome CDS1616635 768 + 0.484375
idnO SSO_4451 5-keto-D-gluconate 5-reductaseSubName: Full=5-keto-D-gluconate 5-reductase; chromosome CDS4723050 765 - 0.494118
kduD SSO_3002 2-deoxy-D-gluconate 3-dehydrogenaseSubName: Full=2-deoxy-D-gluconate 3-dehydrogenase; chromosome CDS3154779 762 - 0.515748
lytB SSO_0034 control of stringent responseRecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; chromosome CDS33443 951 + 0.550999
menE SSO_2321 o-succinylbenzoate-CoA ligaseSubName: Full=O-succinylbenzoate-CoA ligase; chromosome CDS2449417 1422 - 0.554852
pgpA SSO_0395 phosphatidylglycerophosphataseRecName: Full=Phosphatidylglycerophosphatase A; EC=3.1.3.27; AltName: Full=Phosphatidylglycerolphosphate phosphatase A; chromosome CDS421683 519 + 0.529865
pgpB SSO_1862 non-essential phosphatidylglycerophosphate phosphatase, membrane boundSubName: Full=Non-essential phosphatidylglycerophosphate phosphatase, membrane bound; chromosome CDS1959442 765 - 0.501961
pgsA SSO_1206 phosphatidylglycerophosphate synthetase CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferaseRecName: Full=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; EC=2.7.8.5; AltName: Full=Phosphatidylglycerophosphate synthase; Short=PGP synthase; chromosome CDS1284532 549 + 0.522769
phoN2/apy SSO_P004 PhoN2 (Apy)RecName: Full=Acid phosphatase; EC=3.1.3.2; pSS_046 CDS2371 741 + 0.425101
pldB SSO_3999 lysophospholipase L(2)SubName: Full=Lysophospholipase L(2); chromosome CDS4223260 1023 + 0.535679
plsB SSO_4221 glycerol-3-phosphate acyltransferaseRecName: Full=Glycerol-3-phosphate acyltransferase; Short=GPAT; EC=2.3.1.15; chromosome CDS4478466 2484 - 0.549517
plsC SSO_3160 1-acyl-sn-glycerol-3-phosphate acyltransferaseSubName: Full=1-acyl-sn-glycerol-3-phosphate acyltransferase; chromosome CDS3319071 738 - 0.495935
plsX SSO_1110 glycerolphosphate auxotrophy in plsB backgroundRecName: Full=Phosphate acyltransferase; EC=2.3.1.n2; AltName: Full=Acyl-ACP phosphotransacylase; AltName: Full=Acyl-[acyl-carrier-protein]--phosphate acyltransferase; AltName: Full=Phosphate-acyl-ACP acyltransferase; chromosome CDS1188942 1041 + 0.519693
psd SSO_4345 phosphatidylserine decarboxylase; phospholipid synthesisRecName: Full=Phosphatidylserine decarboxylase proenzyme; EC=4.1.1.65; Contains: RecName: Full=Phosphatidylserine decarboxylase alpha chain; Contains: RecName: Full=Phosphatidylserine decarboxylase beta chain; chromosome CDS4616119 969 - 0.532508
pssA SSO_2711 phosphatidylserine synthase; phospholipid synthesisSubName: Full=Phosphatidylserine synthase phospholipid synthesis; chromosome CDS2869057 1359 + 0.488595
sbm SSO_3068 methylmalonyl-CoA mutase (MCM)SubName: Full=Methylmalonyl-CoA mutase (MCM); chromosome CDS3231045 2145 + 0.547319
sbmA SSO_0352 sensitivity to microcin B17, possibly envelop proteinSubName: Full=Sensitivity to microcin B17, possibly envelop protein; chromosome CDS379444 1221 + 0.511876
sorD SSO_4198 putative sorbitol-6-phosphate 2-dehydrogenaseSubName: Full=Putative sorbitol-6-phosphate 2-dehydrogenase; chromosome CDS4449884 807 - 0.51425
tesB SSO_0440 acyl-CoA thioesterase IISubName: Full=Acyl-CoA thioesterase II; chromosome CDS466498 861 - 0.526132
ucpA SSO_2515 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS2652770 858 - 0.539627
wecF SSO_3966 TDP-Fuc4NAc:lipidII transferaseRecName: Full=Putative ECA polymerase; chromosome CDS4189291 1353 + 0.526977
yaeM SSO_0185 putative ATP-binding component of a transport systemRecName: Full=1-deoxy-D-xylulose 5-phosphate reductoisomerase; Short=DXP reductoisomerase; EC=1.1.1.267; AltName: Full=1-deoxyxylulose-5-phosphate reductoisomerase; AltName: Full=2-C-methyl-D-erythritol 4-phosphate synthase; chromosome CDS208442 1197 + 0.52381
yaeS SSO_0186 conserved hypothetical proteinRecName: Full=Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific); EC=2.5.1.31; AltName: Full=Ditrans,polycis-undecaprenylcistransferase; AltName: Full=Undecaprenyl diphosphate synthase; AltName: Full=Undecaprenyl pyrophosphate synthase; chromosome CDS209824 762 + 0.497375
yafH SSO_0263 putative acyl-CoA dehydrogenaseSubName: Full=Putative acyl-CoA dehydrogenase; EC=1.3.99.-; chromosome CDS291006 2481 - 0.565901
ybaC SSO_0463 putative lipaseRecName: Full=Acetyl esterase; EC=3.1.1.-; chromosome CDS491098 960 - 0.515625
ybbO SSO_0482 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS511590 810 - 0.538272
ybdU SSO_0566 conserved hypothetical proteinRecName: Full=Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; EC=2.7.7.61; AltName: Full=Apo-ACP nucleodityltransferase; AltName: Full=Holo-ACP synthase; AltName: Full=Holo-citrate lyase synthase; chromosome CDS606487 552 - 0.586957
ybhO SSO_0768 putative synthetaseSubName: Full=Putative synthetase; chromosome CDS811368 1242 - 0.549114
ybjG SSO_0826 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS879597 597 - 0.517588
ychB SSO_1970 conserved hypothetical proteinRecName: Full=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Short=CMK; EC=2.7.1.148; AltName: Full=4-(cytidine-5-diphospho)-2-C-methyl-D-erythritol kinase; chromosome CDS2071879 852 + 0.53169
yciA SSO_1913 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2007467 399 + 0.486216
yciK SSO_1872 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS1971200 759 + 0.527009
ydgB SSO_1554 putative oxidoreductaseRecName: Full=Dihydrofolate reductase FolM; Short=DHFR; EC=1.5.1.3; chromosome CDS1632975 723 - 0.517289
ygbB SSO_2894 conserved hypothetical proteinRecName: Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Short=MECDP-synthase; Short=MECPP-synthase; Short=MECPS; EC=4.6.1.12; chromosome CDS3034945 480 - 0.5375
ygbP SSO_2895 conserved hypothetical proteinRecName: Full=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC=2.7.7.60; AltName: Full=4-diphosphocytidyl-2C-methyl-D-erythritol synthase; AltName: Full=MEP cytidylyltransferase; Short=MCT; chromosome CDS3035424 711 - 0.552743
ygfF SSO_3055 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS3214964 744 - 0.544355
ygfG SSO_3070 putative enzymeSubName: Full=Putative enzyme; chromosome CDS3234146 828 + 0.479469
yghA SSO_3147 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS3306100 885 + 0.546893
yhaE SSO_3280 putative dehydrogenaseSubName: Full=Putative dehydrogenase; chromosome CDS3456331 900 - 0.527778
yhbT SSO_3303 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3477565 525 - 0.51619
yihG SSO_4035 putative endonucleaseSubName: Full=Putative endonuclease; chromosome CDS4262609 933 - 0.453376
yihU SSO_4048 putative dehydrogenaseSubName: Full=Putative dehydrogenase; chromosome CDS4281898 879 + 0.517634
yjgI SSO_4429 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS4699793 714 - 0.540616
ymdC SSO_1059 putative synthaseSubName: Full=Putative synthase; chromosome CDS1137608 1482 + 0.505398
ynbD SSO_1735 putative enzymeSubName: Full=Putative enzyme; chromosome CDS1838189 1293 - 0.499613
yohF SSO_2194 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS2299442 762 - 0.553806
yqeF SSO_3004 putative acyltransferaseSubName: Full=Putative acyltransferase; chromosome CDS3156728 1185 - 0.537553