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2024-05-25 12:33:56

Gene list

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COG category: Lipid transport and metabolism
Organism: Shigella boydii Sb227, Sb227

Number of genes found: 83

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Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SBO_3109 putative synthasesSubName: Full=Putative synthases; chromosome CDS3110074 1626 + 0.523985
NA SBO_2379 putative enzymeRecName: Full=Fatty acid oxidation complex subunit alpha; Includes: RecName: Full=Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; EC=4.2.1.17; EC=5.1.2.3; Includes: RecName: Full=3-hydroxyacyl-CoA dehydrogenase; EC=1.1.1.35; chromosome CDS2367340 2145 - 0.519347
NA SBO_1428 putative IS1 encoded proteinSubName: Full=Putative IS1 encoded protein; chromosome CDS1404948 333 - 0.438438
NA SBO_1436 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS1412060 1206 - 0.524876
NA SBO_2150 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2125449 750 - 0.426667
NA SBO_3103 putative enzymeRecName: Full=Isopentenyl-diphosphate Delta-isomerase; Short=IPP isomerase; EC=5.3.3.2; AltName: Full=IPP:DMAPP isomerase; AltName: Full=Isopentenyl pyrophosphate isomerase; chromosome CDS3104859 549 - 0.500911
NA SBO_1331 putative cytochrome oxidaseSubName: Full=Putative cytochrome oxidase; chromosome CDS1314638 618 + 0.533981
NA SBO_4244 putative enzymeRecName: Full=Acetate CoA-transferase YdiF; EC=2.8.3.8; chromosome CDS4299160 1542 + 0.529183
NA SBO_2784 putative dehydrogenaseSubName: Full=Putative dehydrogenase; chromosome CDS2790897 909 - 0.529153
NA SBO_4243 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4298374 777 + 0.500643
NA SBO_2380 putative acyltransferaseRecName: Full=3-ketoacyl-CoA thiolase; EC=2.3.1.16; AltName: Full=ACSs; AltName: Full=Acetyl-CoA acyltransferase; AltName: Full=Acyl-CoA ligase; AltName: Full=Beta-ketothiolase; AltName: Full=Fatty acid oxidation complex subunit beta; chromosome CDS2369484 1311 - 0.556064
NA SBO_1680 probable enzymeSubName: Full=Probable enzyme; chromosome CDS1665575 342 + 0.467836
NA SBO_4241 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4296586 927 + 0.518878
NA SBO_2754 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2763058 477 - 0.469602
aas SBO_2728 2-acyl-glycerophospho-ethanolamineacyltransferas eSubName: Full=2-acyl-glycerophospho-ethanolamine acyltransferase; chromosome CDS2739104 2160 - 0.523148
accA SBO_0173 acetylCoA carboxylase, carboxytransferase component, alpha subunitRecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Short=ACCase subunit alpha; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha; EC=6.4.1.2; chromosome CDS194637 960 + 0.529167
accB SBO_3133 acetylCoA carboxylase, BCCP subunitSubName: Full=AcetylCoA carboxylase, BCCP subunit; chromosome CDS3135531 471 - 0.52017
accC SBO_3132 acetyl CoA carboxylase, biotin carboxylase subunitSubName: Full=Acetyl CoA carboxylase, biotin carboxylase subunit; chromosome CDS3134171 1350 - 0.531111
accD SBO_2353 acetylCoA carboxylase, carboxytransferase component, beta subunitRecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Short=ACCase subunit beta; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta; EC=6.4.1.2; chromosome CDS2341907 915 - 0.55082
acpD SBO_1675 acyl carrier protein phosphodiesteraseRecName: Full=FMN-dependent NADH-azoreductase; EC=1.7.-.-; AltName: Full=Azo-dye reductase; AltName: Full=FMN-dependent NADH-azo compound oxidoreductase; chromosome CDS1661016 606 + 0.524752
acpP SBO_1969 acyl carrier proteinRecName: Full=Acyl carrier protein; Short=ACP; chromosome CDS1943482 237 - 0.481013
acpS SBO_2591 CoA:apo-[acyl-carrier-protein]pantetheinephospho transferaseRecName: Full=Holo-[acyl-carrier-protein] synthase; Short=Holo-ACP synthase; EC=2.7.8.7; AltName: Full=4-phosphopantetheinyl transferase AcpS; chromosome CDS2597696 381 - 0.503937
aidB SBO_4268 putative acyl coenzyme A dehydrogenaseSubName: Full=Putative acyl coenzyme A dehydrogenase; chromosome CDS4317706 1641 - 0.541133
cdh SBO_3935 CDP-diacylglycerol phosphotidylhydrolaseRecName: Full=CDP-diacylglycerol pyrophosphatase; EC=3.6.1.26; AltName: Full=CDP-diacylglycerol phosphatidylhydrolase; AltName: Full=CDP-diglyceride hydrolase; chromosome CDS3963505 756 + 0.488095
cdsA SBO_0163 CDP-diglyceride synthetaseRecName: Full=Phosphatidate cytidylyltransferase; EC=2.7.7.41; chromosome CDS181802 750 + 0.501333
cls SBO_1818 cardiolipin synthaseRecName: Full=Cardiolipin synthase A; Short=CL synthase; EC=2.7.8.-; chromosome CDS1795618 1461 + 0.516085
dxs SBO_0314 1-deoxyxylulose-5-phosphate synthaseRecName: Full=1-deoxy-D-xylulose-5-phosphate synthase; EC=2.2.1.7; AltName: Full=1-deoxyxylulose-5-phosphate synthase; Short=DXP synthase; Short=DXPS; chromosome CDS327161 1863 - 0.541063
entA SBO_0457 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenaseSubName: Full=2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; chromosome CDS477028 747 + 0.576975
fabA SBO_2277 beta-hydroxydecanoyl thioester dehydraseRecName: Full=3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; EC=4.2.1.59; AltName: Full=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA; AltName: Full=Beta-hydroxydecanoyl thioester dehydrase; AltName: Full=Trans-2-decenoyl-[acyl-carrier-protein] isomerase; EC=5.3.3.14; chromosome CDS2263851 519 + 0.526012
fabB SBO_2360 3-oxoacyl-[acyl-carrier-protein] synthase ISubName: Full=3-oxoacyl-[acyl-carrier-protein] synthase I; chromosome CDS2349335 1221 - 0.561835
fabD SBO_1971 malonyl-CoA-[acyl-carrier-protein] transacylaseRecName: Full=Malonyl CoA-acyl carrier protein transacylase; EC=2.3.1.39; chromosome CDS1944676 930 - 0.550538
fabF SBO_1968 3-oxoacyl-[acyl-carrier-protein] synthase IIRecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2; EC=2.3.1.179; chromosome CDS1942153 1242 - 0.532206
fabG SBO_1970 3-oxoacyl-[acyl-carrier-protein] reductaseSubName: Full=3-oxoacyl-[acyl-carrier-protein] reductase; chromosome CDS1943929 735 - 0.514286
fabH SBO_1972 3-oxoacyl-[acyl-carrier-protein] synthase IIIRecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 3; EC=2.3.1.180; AltName: Full=3-oxoacyl-[acyl-carrier-protein] synthase III; AltName: Full=Beta-ketoacyl-ACP synthase III; Short=KAS III; chromosome CDS1945621 954 - 0.544025
fabI SBO_1774 enoyl-[acyl-carrier-protein] reductase (NADH)RecName: Full=Enoyl-[acyl-carrier-protein] reductase [NADH]; EC=1.3.1.9; chromosome CDS1751284 789 + 0.532319
fabZ SBO_0168 (3R)-hydroxymyristol acyl carrier protein dehydrataseRecName: Full=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; EC=4.2.1.59; AltName: Full=(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Short=(3R)-hydroxymyristoyl-ACP dehydrase; AltName: Full=Beta-hydroxyacyl-ACP dehydratase; chromosome CDS188118 456 + 0.504386
fadA SBO_3857 thiolase IRecName: Full=3-ketoacyl-CoA thiolase; EC=2.3.1.16; AltName: Full=Acetyl-CoA acyltransferase; AltName: Full=Beta-ketothiolase; AltName: Full=Fatty acid oxidation complex subunit beta; chromosome CDS3880856 1164 - 0.583333
fadD SBO_1283 acyl-CoA synthetaseSubName: Full=Acyl-CoA synthetase; chromosome CDS1271842 1686 + 0.511269
fadL SBO_2382 transport of long-chain fatty acidsSubName: Full=Transport of long-chain fatty acids; chromosome CDS2371624 1347 + 0.498886
gcpE SBO_2539 conserved hypothetical proteinRecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; EC=1.17.7.1; AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; chromosome CDS2536408 1119 - 0.532618
hcaB SBO_2565 2,3-dihydroxy-2,3-dihydrophenylpropionatedehydro genaseRecName: Full=3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase; EC=1.3.1.87; AltName: Full=2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; AltName: Full=3-(cis-5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate dehydrogenase; AltName: Full=CI-dihydrodiol dehydrogenase; AltName: Full=Cis-3-(2-carboxyethenyl)-3,5-cyclohexadiene-1,2-diol dehydrogenase; AltName: Full=Cis-3-(2-carboxyethyl)-3,5-cyclohexadiene-1,2-diol dehydrogenase; AltName: Full=PP-dihydrodiol dehydrogenase; chromosome CDS2566433 813 + 0.563346
hdhA SBO_1517 NAD-dependent 7alpha-hydroxysteroid dehydrogenaseSubName: Full=NAD-dependent 7alpha-hydroxysteroid dehydrogenase; chromosome CDS1494183 768 + 0.47526
kduD SBO_2734 2-deoxy-D-gluconate 3-dehydrogenaseSubName: Full=2-deoxy-D-gluconate 3-dehydrogenase; chromosome CDS2747547 762 - 0.520997
lytB SBO_0028 LytBRecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; chromosome CDS26313 951 + 0.550999
menE SBO_2297 o-succinylbenzoate-CoA ligaseSubName: Full=O-succinylbenzoate-CoA ligase; chromosome CDS2285818 1356 - 0.548673
pgpA SBO_0312 phosphatidylglycerophosphataseRecName: Full=Phosphatidylglycerophosphatase A; EC=3.1.3.27; AltName: Full=Phosphatidylglycerolphosphate phosphatase A; chromosome CDS325560 519 + 0.529865
pgpB SBO_1786 non-essential phosphatidylglycerophosphate phosphatase, membrane boundSubName: Full=Non-essential phosphatidylglycerophosphate phosphatase, membrane bound; chromosome CDS1762986 765 - 0.498039
pgsA SBO_1094 phosphatidylglycerophosphate synthetase CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferaseRecName: Full=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; EC=2.7.8.5; AltName: Full=Phosphatidylglycerophosphate synthase; Short=PGP synthase; chromosome CDS1103635 549 + 0.52459
pldB SBO_3837 lysophospholipase L(2)SubName: Full=Lysophospholipase L(2); chromosome CDS3859298 1023 + 0.538612
plsB SBO_4076 glycerol-3-phosphate acyltransferaseRecName: Full=Glycerol-3-phosphate acyltransferase; Short=GPAT; EC=2.3.1.15; chromosome CDS4117133 2484 + 0.546699
plsC SBO_2880 1-acyl-sn-glycerol-3-phosphate acyltransferaseSubName: Full=1-acyl-sn-glycerol-3-phosphate acyltransferase; chromosome CDS2883543 738 - 0.495935
plsX SBO_1973 glycerolphosphate auxotrophy in plsB backgroundRecName: Full=Phosphate acyltransferase; EC=2.3.1.n2; AltName: Full=Acyl-ACP phosphotransacylase; AltName: Full=Acyl-[acyl-carrier-protein]--phosphate acyltransferase; AltName: Full=Phosphate-acyl-ACP acyltransferase; chromosome CDS1946642 1041 - 0.519693
psd SBO_4297 phosphatidylserine decarboxylaseRecName: Full=Phosphatidylserine decarboxylase proenzyme; EC=4.1.1.65; Contains: RecName: Full=Phosphatidylserine decarboxylase alpha chain; Contains: RecName: Full=Phosphatidylserine decarboxylase beta chain; chromosome CDS4344152 969 + 0.532508
pssA SBO_2617 phosphatidylserine synthaseSubName: Full=Phosphatidylserine synthase; chromosome CDS2622406 1359 + 0.487859
sbmA SBO_0272 SbmASubName: Full=SbmA; chromosome CDS285810 1221 + 0.511056
sorD SBO_4048 putative sorbitol-6-phosphate 2-dehydrogenaseSubName: Full=Putative sorbitol-6-phosphate 2-dehydrogenase; chromosome CDS4091055 807 - 0.505576
srlD SBO_2813 glucitol (sorbitol)-6-phosphate dehydrogenaseSubName: Full=Glucitol (Sorbitol)-6-phosphate dehydrogenase; chromosome CDS2823329 780 - 0.525641
tesB SBO_0347 acyl-CoA thioesterase IISubName: Full=Acyl-CoA thioesterase II; chromosome CDS364592 861 - 0.527294
ucpA SBO_2451 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS2442181 858 - 0.537296
wecF SBO_3805 TDP-Fuc4NAc:lipidII transferaseRecName: Full=Putative ECA polymerase; chromosome CDS3828087 1353 + 0.525499
yaeM SBO_0161 putative ATP-binding component of a transport systemRecName: Full=1-deoxy-D-xylulose 5-phosphate reductoisomerase; Short=DXP reductoisomerase; EC=1.1.1.267; AltName: Full=1-deoxyxylulose-5-phosphate reductoisomerase; AltName: Full=2-C-methyl-D-erythritol 4-phosphate synthase; chromosome CDS179539 1197 + 0.524645
yaeS SBO_0162 conserved hypothetical proteinRecName: Full=Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific); EC=2.5.1.31; AltName: Full=Ditrans,polycis-undecaprenylcistransferase; AltName: Full=Undecaprenyl diphosphate synthase; AltName: Full=Undecaprenyl pyrophosphate synthase; chromosome CDS180920 762 + 0.496063
ybaC SBO_0376 putative lipaseRecName: Full=Acetyl esterase; EC=3.1.1.-; chromosome CDS392160 960 - 0.514583
ybbO SBO_0395 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS412161 810 - 0.539506
ybdU SBO_0479 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS497987 489 - 0.591002
ybjG SBO_0737 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS754772 597 - 0.520938
ychB SBO_1859 conserved hypothetical proteinRecName: Full=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Short=CMK; EC=2.7.1.148; AltName: Full=4-(cytidine-5-diphospho)-2-C-methyl-D-erythritol kinase; chromosome CDS1839782 852 + 0.532864
yciA SBO_1812 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1790749 399 + 0.491228
yciK SBO_1795 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS1774591 759 + 0.523057
ydgB SBO_1530 putative oxidoreductaseRecName: Full=Dihydrofolate reductase FolM; Short=DHFR; EC=1.5.1.3; chromosome CDS1510504 723 - 0.51314
ygbB SBO_2774 conserved hypothetical proteinRecName: Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Short=MECDP-synthase; Short=MECPP-synthase; Short=MECPS; EC=4.6.1.12; chromosome CDS2781499 480 + 0.539583
ygbP SBO_2773 conserved hypothetical proteinRecName: Full=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC=2.7.7.60; AltName: Full=4-diphosphocytidyl-2C-methyl-D-erythritol synthase; AltName: Full=MEP cytidylyltransferase; Short=MCT; chromosome CDS2780789 711 + 0.552743
ygfG SBO_3075 putative enzymeSubName: Full=Putative enzyme; chromosome CDS3073351 828 - 0.481884
yghA SBO_2997 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS3000624 885 + 0.544633
yhaE SBO_2990 putative dehydrogenaseSubName: Full=Putative dehydrogenase; chromosome CDS2994495 900 - 0.526667
yhbT SBO_3225 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3233802 525 + 0.514286
yihG SBO_3875 putative endonucleaseSubName: Full=Putative endonuclease; chromosome CDS3900028 933 - 0.45552
yihU SBO_3887 putative dehydrogenaseSubName: Full=Putative dehydrogenase; chromosome CDS3917879 879 + 0.515358
yjgI SBO_4198 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS4248347 714 + 0.543417
ymdC SBO_2020 putative synthaseSubName: Full=Putative synthase; chromosome CDS1991599 1482 - 0.504723
ynbD SBO_1676 putative enzymeSubName: Full=Putative enzyme; chromosome CDS1661672 1293 - 0.499613
yohF SBO_1007 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS1025466 762 + 0.553806
yqeF SBO_2736 putative acyltransferaseSubName: Full=Putative acyltransferase; chromosome CDS2749461 1185 - 0.535021