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2024-05-05 17:36:19

Gene list

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COG category: Lipid transport and metabolism
Organism: Silicibacter pomeroyi DSS-3, DSS-3

Number of genes found: 200

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPO0525 sterol desaturase, homologchromosome CDS521164 795 - 0.628931
NA SPO2091 phosphatidylglycerophosphatase, putativechromosome CDS2229797 498 + 0.668675
NA SPO0739 enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenasechromosome CDS768721 2046 - 0.677419
NA SPO3654 7-alpha-hydroxysteroid dehydrogenase, putativechromosome CDS3856655 801 - 0.649189
NA SPOA0126 oxidoreductase, short chain dehydrogenase/reductase familymegaplasmid CDS136399 726 - 0.607438
NA SPO1971 enoyl-CoA hydratase/isomerase family proteinchromosome CDS2101866 825 + 0.699394
NA SPO1414 hydrolase, alpha/beta fold familychromosome CDS1485525 963 - 0.69055
NA SPO3369 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3570837 813 + 0.661747
NA SPO0879 acyl-CoA dehydrogenase family proteinchromosome CDS936870 1236 + 0.635113
NA SPO0369 acyltransferase family proteinchromosome CDS382532 1584 + 0.624369
NA SPO1932 beta-ketoacyl synthase family proteinchromosome CDS2059353 1209 + 0.643507
NA SPO0383 acyl carrier protein phosphodiesterase, putativechromosome CDS397406 615 - 0.601626
NA SPO0578 acetyl-CoA carboxylase carboxyltransferasechromosome CDS590574 1620 + 0.665432
NA SPOA0408 conserved hypothetical proteinmegaplasmid CDS454843 777 + 0.694981
NA SPO3574 conserved hypothetical proteinchromosome CDS3784425 600 - 0.661667
NA SPO0131 isopentyl-diphosphate delta-isomerasechromosome CDS137668 543 + 0.622468
NA SPO1447 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1518063 1296 - 0.708333
NA SPO0666 enoyl-CoA hydratase/isomerase family proteinchromosome CDS692042 804 + 0.71393
NA SPO2542 biotin/lipoate binding domain proteinchromosome CDS2693316 228 + 0.565789
NA SPO1966 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2096909 819 - 0.643468
NA SPO2409 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2560699 768 - 0.640625
NA SPO1959 acetoacetyl-CoA synthasechromosome CDS2089171 1962 - 0.655454
NA SPO3805 enoyl-CoA hydratase/isomerase family proteinchromosome CDS4020265 804 + 0.640547
NA SPO1449 AMP-binding proteinchromosome CDS1520491 1650 - 0.679394
NA SPO1931 acyl carrier protein, putativechromosome CDS2059087 258 + 0.565891
NA SPO2211 acyl-CoA dehydrogenasechromosome CDS2350328 1143 + 0.630796
NA SPOA0403 acyl-CoA dehydrogenase family proteinmegaplasmid CDS449201 1143 - 0.678915
NA SPO2416 3-hydroxyisobutyrate dehydrogenase family proteinchromosome CDS2567541 912 - 0.640351
NA SPO1013 thiolase family proteinchromosome CDS1062462 1161 + 0.663221
NA SPO2787 enoyl-CoA hydratase/isomerase family proteinchromosome CDS2972571 789 - 0.68948
NA SPO1968 acyl-CoA dehydrogenase family proteinchromosome CDS2098858 1158 - 0.643351
NA SPO2528 AMP-binding enzymechromosome CDS2676621 1716 - 0.614219
NA SPO1847 AMP-binding enzymechromosome CDS1966939 1887 - 0.621092
NA SPO3750 conserved hypothetical proteinchromosome CDS3961309 1020 + 0.602941
NA SPO1979 acyltransferase, putativechromosome CDS2109260 834 - 0.655875
NA SPO0112 poly(3-hydroxyalkanoate) polymerase family proteinchromosome CDS118243 1842 + 0.584691
NA SPO2111 outer membrane transporter, OMPP1/FadL/TodX familychromosome CDS2248223 1140 + 0.646491
NA SPO0829 conserved hypothetical proteinchromosome CDS860930 1494 - 0.645917
NA SPO0016 sterol carrier family proteinchromosome CDS16332 282 - 0.588652
NA SPO2427 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2577596 723 - 0.669433
NA SPO2692 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2844179 780 - 0.689744
NA SPO0792 6-phosphogluconate dehydrogenase domain proteinchromosome CDS825265 873 - 0.67583
NA SPO2212 enoyl-CoA hydratase/isomerase family proteinchromosome CDS2351478 1047 + 0.642789
NA SPO0777 enoyl-CoA hydratase/isomerase family proteinchromosome CDS809916 768 + 0.704427
NA SPO0619 sterol desaturase family proteinchromosome CDS637522 1197 + 0.602339
NA SPOA0425 acetyl-CoA acyltransferase/thiolasemegaplasmid CDS471770 1209 - 0.663358
NA SPO3439 enoyl-CoA hydratase/isomerase family proteinchromosome CDS3642266 609 - 0.694581
NA SPO0773 acetyl-CoA acyltransferase/thiolase family proteinchromosome CDS805905 1176 + 0.670918
NA SPO1436 3-hydroxyacyl-CoA dehydrogenase family proteinchromosome CDS1508173 1464 + 0.648907
NA SPO2380 acyl-CoA dehydrogenasechromosome CDS2523564 1167 - 0.571551
NA SPO3296 AMP-binding enzymechromosome CDS3494774 1974 - 0.610436
NA SPO3051 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3264047 639 - 0.674491
NA SPO3875 conserved hypothetical proteinchromosome CDS4091515 351 + 0.626781
NA SPO0527 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS522955 768 + 0.661458
NA SPO2539 AMP-binding enzymechromosome CDS2688666 1548 - 0.631783
NA SPO2705 3-hydroxyacyl-CoA dehydrogenase family proteinchromosome CDS2858777 954 - 0.658281
NA SPO2129 conserved hypothetical proteinchromosome CDS2261595 783 - 0.703704
NA SPOA0404 enoyl-CoA hydratase/isomerase family proteinmegaplasmid CDS450396 804 - 0.636816
NA SPO3025 enoyl-CoA hydratase/isomerase family proteinchromosome CDS3229758 783 - 0.641124
NA SPO3804 acyl-CoA dehydrogenase family proteinchromosome CDS4018439 1767 + 0.661573
NA SPO1972 nodulation protein Nchromosome CDS2102697 507 + 0.660749
NA SPO1445 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1516571 723 - 0.661134
NA SPO0328 conserved hypothetical proteinchromosome CDS339136 933 - 0.609861
NA SPO2541 propionyl-CoA carboxylase, putativechromosome CDS2691615 1557 - 0.635196
NA SPO0579 acetyl-CoA carboxylase, biotin carboxylase, putativechromosome CDS592193 1983 + 0.696924
NA SPO1441 fatty acid desaturase family proteinchromosome CDS1511935 903 + 0.645626
NA SPO0774 acyl-CoA dehydrogenase family proteinchromosome CDS807187 1191 + 0.632242
NA SPO2915 acyl-CoA dehydrogenase family proteinchromosome CDS3113063 1782 + 0.635241
NA SPO0814 MaoC domain proteinchromosome CDS847599 444 + 0.630631
NA SPO0677 AMP-binding proteinchromosome CDS706831 1629 + 0.637201
NA SPO1957 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2087518 771 + 0.629053
NA SPO1015 3-hydroxybutyrate dehydrogenase, putativechromosome CDS1065124 804 + 0.687811
NA SPO2339 enoyl-CoA hydratase/isomerase family proteinchromosome CDS2479902 771 - 0.688716
NA SPO1958 acyl-CoA thioesterase IIchromosome CDS2088285 870 - 0.643678
NA SPOA0130 AMP-binding enzyme family proteinmegaplasmid CDS140319 1620 - 0.609259
NA SPO0693 isobutyryl-CoA dehydrogenasechromosome CDS723039 1695 - 0.644248
NA SPO3002 lipase, putativechromosome CDS3201378 924 - 0.683983
NA SPO2698 acyl-CoA dehydrogenase family proteinchromosome CDS2851637 1161 - 0.64944
NA SPOA0406 D-beta-hydroxybutyrate dehydrogenase, putativemegaplasmid CDS451660 759 - 0.675889
NA SPO0298 acyl-CoA dehydrogenase family proteinchromosome CDS311525 1704 + 0.659624
NA SPO3152 MaoC domain proteinchromosome CDS3359719 495 + 0.612121
NA SPO2918 acetyl-CoA acyltransferase/thiolasechromosome CDS3116029 1212 + 0.65099
NA SPO0128 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS135168 756 + 0.634921
NA SPOA0129 conserved hypothetical proteinmegaplasmid CDS139144 1176 - 0.60034
NA SPO0440 thioesterase family proteinchromosome CDS454260 417 + 0.645084
NA SPO0775 acyl-CoA dehydrogenase family proteinchromosome CDS808383 1128 + 0.66578
NA SPO0772 enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenasechromosome CDS803809 2097 + 0.67382
NA SPO2178 cardiolipin synthasechromosome CDS2313848 1413 + 0.656051
NA SPOA0282 long-chain-fatty-acid--CoA ligase, putativemegaplasmid CDS309822 1518 - 0.65415
NA SPO3646 enoyl-CoA hydratase/isomerase family proteinchromosome CDS3848025 930 - 0.648387
NA SPO0778 long-chain-fatty-acid--CoA ligase, putativechromosome CDS810706 1491 + 0.672032
NA SPO3651 fatty acid desaturase family proteinchromosome CDS3854207 945 + 0.626455
NA SPO1448 conserved hypothetical proteinchromosome CDS1519316 1179 - 0.659033
NA SPO1415 sterol carrier family proteinchromosome CDS1486487 291 - 0.621993
NA SPO2842 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3041580 741 + 0.697706
NA SPO1687 enoyl-CoA hydratase/isomerase family proteinchromosome CDS1794417 786 - 0.667939
NA SPO2451 acyltransferase, putativechromosome CDS2603669 765 - 0.691503
NA SPO3700 enoyl-CoA hydratase/isomerase family proteinchromosome CDS3910527 1662 + 0.637184
NA SPO1480 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS1553536 726 - 0.640496
NA SPO2679 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS2833090 645 + 0.691473
NA SPO2538 acyl-CoA dehydrogenase famiy proteinchromosome CDS2687395 1242 - 0.628019
NA SPO1965 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2095969 930 - 0.667742
NA SPO1014 AMP-binding enzymechromosome CDS1063619 1509 + 0.671968
NA SPO0795 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS829201 756 - 0.674603
NA SPO3408 acetyl-CoA C-acetyltransferasechromosome CDS3609809 1173 - 0.680307
NA SPO0724 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS751738 828 - 0.657005
NA SPO0746 conserved domain proteinchromosome CDS778868 1371 - 0.629468
NA SPO1467 3-hydroxyacyl-CoA dehydrogenase family proteinchromosome CDS1539600 984 + 0.672764
NA SPO1105 methylmalonyl-CoA mutasechromosome CDS1159698 2130 + 0.63615
NA SPO2428 6-phosphogluconate dehydrogenase domain proteinchromosome CDS2578315 909 - 0.628163
NA SPOA0128 oxidoreductase, short chain dehydrogenase/reductase familymegaplasmid CDS137909 1239 - 0.650525
NA SPO0355 conserved hypothetical proteinchromosome CDS367782 1029 + 0.637512
NA SPO2327 fatty acid desaturasechromosome CDS2462563 984 - 0.613821
NA SPO0758 beta-ketoadipyl CoA thiolasechromosome CDS791039 1203 - 0.670823
NA SPO1882 enoyl-CoA hydratase/isomerase family proteinchromosome CDS2005288 777 + 0.66538
NA SPO2413 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2564548 753 + 0.673307
NA SPO1967 acyl-CoA dehydrogenase, putativechromosome CDS2097737 1116 - 0.674731
NA SPO1639 fadB domain proteinchromosome CDS1742777 462 + 0.616883
NA SPO2487 3-hydroxyacyl-CoA dehydrogenase, type IIchromosome CDS2637110 756 + 0.67328
NA SPO3003 AMP-binding enzymechromosome CDS3202319 1926 - 0.629803
NA SPO0339 acyltransferase family proteinchromosome CDS350864 732 + 0.621585
NA SPO2859 3-hydroxyisobutyrate dehydrogenase family proteinchromosome CDS3056743 963 - 0.638629
NA SPO0147 enoyl-CoA hydratasechromosome CDS162522 777 + 0.625483
NA SPO3848 sterol desaturase family proteinchromosome CDS4063148 783 - 0.592593
NA SPO3440 20-beta-hydroxysteroid dehydrogenase, putativechromosome CDS3642871 753 - 0.667995
NA SPO0368 methylmalonyl-CoA mutasechromosome CDS380565 2001 - 0.61969
NA SPO3638 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3840036 780 - 0.657692
NA SPO2540 carbamoyl-phosphate synthase, putativechromosome CDS2690237 1371 - 0.641138
NA SPO2096 aromatic-rich family proteinchromosome CDS2234124 447 - 0.615213
accA SPO3616 acetyl-CoA carboxylase, carboxyl transferase, alpha subunitchromosome CDS3820304 963 + 0.653167
accB SPO1011 acetyl-CoA carboxylase, biotin carboxyl carrier proteinchromosome CDS1061193 495 - 0.680808
accC SPO1010 acetyl-CoA carboxylase, biotin carboxylasechromosome CDS1059833 1350 - 0.631111
accD SPO3817 acetyl-CoA carboxylase, carboxyl transferase, beta subunitchromosome CDS4033524 945 + 0.630688
acdA-1 SPO0575 acyl-CoA dehydrogenasechromosome CDS586901 1158 - 0.654577
acdA-2 SPO0582 acyl-CoA dehydrogenasechromosome CDS596201 1158 + 0.622625
acdA-3 SPOA0288 acyl-CoA dehydrogenasemegaplasmid CDS317587 1161 - 0.62963
acpP SPO2274 acyl carrier proteinchromosome CDS2413533 234 - 0.58547
acpS SPO3200 holo-(acyl-carrier-protein) synthasechromosome CDS3411888 447 - 0.659955
acs SPO1813 acetyl-coenzyme A synthetasechromosome CDS1930433 1965 - 0.649873
acsA SPO2791 acetyl-coenzyme A synthetasechromosome CDS2978556 1533 - 0.691455
alkK SPO2045 medium-chain-fatty-acid--CoA ligasechromosome CDS2174589 1620 - 0.641975
badA-1 SPO3697 benzoate-coenzyme A ligasechromosome CDS3907583 1530 + 0.662745
badA-2 SPOA0401 benzoate-coenzyme A ligasemegaplasmid CDS447094 1623 - 0.650031
bdh-1 SPO2065 D-beta-hydroxybutyrate dehydrogenasechromosome CDS2196494 774 - 0.648579
bdh-2 SPO2823 D-beta-hydroxybutyrate dehydrogenasechromosome CDS3016510 753 + 0.665339
bhbD SPO0717 3-hydroxybutyryl-CoA dehydrogenasechromosome CDS746531 876 - 0.634703
bktB SPO0142 beta-ketothiolasechromosome CDS156963 1176 + 0.651361
caiD-1 SPO2706 carnitinyl-CoA dehydratasechromosome CDS2859727 822 - 0.626521
caiD-2 SPOA0285 carnitinyl-CoA dehydratasemegaplasmid CDS314098 786 - 0.651399
cdsA SPO1666 phosphatidate cytidylyltransferasechromosome CDS1773245 783 + 0.671775
dxnG SPO3082 3-oxoadipate CoA-succinyl transferase, alpha subunitchromosome CDS3292312 705 + 0.602837
dxnH SPO3083 3-oxoadipate CoA-succinyl transferase, beta subunitchromosome CDS3293020 627 + 0.634769
dxr SPO1667 1-deoxy-D-xylulose 5-phosphate reductoisomerasechromosome CDS1774027 1188 + 0.679293
dxs SPO0247 1-deoxy-D-xylulose-5-phosphate synthasechromosome CDS267660 1929 - 0.659409
fabA SPOA0444 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabAmegaplasmid CDS489506 510 - 0.629412
fabB SPOA0440 3-oxoacyl-(acyl-carrier-protein) synthasemegaplasmid CDS486694 1230 - 0.646341
fabD SPO2276 malonyl CoA-acyl carrier protein transacylasechromosome CDS2414774 939 - 0.696486
fabF SPO2271 3-oxoacyl-(acyl carrier protein) synthase IIchromosome CDS2410614 1266 - 0.64613
fabG SPO2275 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS2413979 738 - 0.642276
fabH-1 SPO0918 3-oxoacyl-[acyl-carrier-protein] synthase IIIchromosome CDS971105 1128 - 0.626773
fabH-2 SPO2494 3-oxoacyl-(acyl-carrier-protein) synthase IIIchromosome CDS2643227 972 + 0.662551
fabI-1 SPO0113 enoyl-(acyl-carrier-protein) reductasechromosome CDS120115 765 + 0.610458
fabI-2 SPO2142 enoyl-(acyl-carrier-protein) reductasechromosome CDS2276982 807 + 0.605948
fabI-3 SPOA0439 enoyl-(acyl-carrier-protein) reductasemegaplasmid CDS485896 792 - 0.635101
fabJ-1 SPO2920 fatty oxidation complex, alpha subunitchromosome CDS3117721 2202 + 0.646685
fabJ-2 SPOA0424 fatty oxidation complex, alpha subunitmegaplasmid CDS469613 2145 - 0.643823
fabZ SPO1672 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZchromosome CDS1779981 474 + 0.601266
fadD SPO0801 4-coumarate:CoA ligasechromosome CDS835353 1608 - 0.652985
fcs SPO3696 feruloyl-CoA synthetasechromosome CDS3905730 1707 + 0.659051
garR SPO2560 2-hydroxy-3-oxopropionate reductasechromosome CDS2711726 900 + 0.643333
gcdH SPO1955 glutaryl-CoA dehydrogenasechromosome CDS2084084 1311 + 0.623951
gno SPO0595 gluconate 5-dehydrogenasechromosome CDS614292 762 + 0.688976
idnO SPO2417 gluconate 5-dehydrogenasechromosome CDS2568543 762 - 0.654856
ispDF SPO2090 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/ 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthasechromosome CDS2228508 1293 + 0.672854
ispE SPO0318 4-diphosphocytidyl-2C-methyl-D-erythritol kinasechromosome CDS330431 840 + 0.663095
ispG SPO2594 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthasechromosome CDS2749081 1128 - 0.660461
ispH SPO3207 4-hydroxy-3-methylbut-2-enyl diphosphate reductasechromosome CDS3417945 951 + 0.654048
ivD SPO2793 isovaleryl-CoA dehydrogenasechromosome CDS2980923 1164 - 0.633161
linC-1 SPO1437 2,5-dichloro-2,5-cyclohexadiene-1,4-dioldehydrog enasechromosome CDS1509633 762 + 0.671916
linC-2 SPO3609 2,5-dichloro-2,5-cyclohexadiene-1,4-dioldehydrog enasechromosome CDS3815439 783 - 0.62963
mccA SPO2789 methylcrotonyl-CoA carboxylase, alpha subunitchromosome CDS2974346 1938 - 0.679051
mccB SPO2790 methylcrotonyl-CoA carboxylase, beta subunitchromosome CDS2976955 1605 - 0.662928
mmsB-1 SPO2213 3-hydroxyisobutyrate dehydrogenasechromosome CDS2352521 873 + 0.679267
mmsB-2 SPO3097 3-hydroxyisobutyrate dehydrogenasechromosome CDS3306968 810 + 0.634568
mvaA SPOA0163 hydroxymethylglutaryl-CoA reductase, degradativemegaplasmid CDS179002 1302 - 0.672043
paaB SPO0740 enoyl-CoA hydratase/isomerase PaaBchromosome CDS770869 786 + 0.648855
paaZ SPO0735 phenylacetic acid degradation protein PaaZchromosome CDS763540 2022 - 0.659743
pccA SPO1101 propionyl-CoA carboxylase, alpha subunitchromosome CDS1155594 2046 + 0.637341
pccB SPO1094 propionyl-CoA carboxylase, beta subunitchromosome CDS1149329 1533 + 0.62818
pcs SPO3131 phosphatidylcholine synthasechromosome CDS3340305 708 + 0.596045
pgsA SPO3635 CDP-diacylglycerol--glycerol-3-phosphate3-phosph atidyltransferasechromosome CDS3835933 672 - 0.607143
phaC SPO1292 poly(3-hydroxyalkanoate) polymerasechromosome CDS1355058 1803 + 0.604548
phaZ SPO1291 polyhydroxyalkanoate depolymerase, intracellularchromosome CDS1353672 1275 - 0.618824
phbA SPO0326 acetyl-CoA acetyltransferasechromosome CDS336736 1176 - 0.656463
phbB SPO0325 acetoacetyl-CoA reductasechromosome CDS335827 723 - 0.637621
plsX SPO2493 fatty acid/phospholipid synthesis protein PlsXchromosome CDS2642106 1116 + 0.646057
prpE SPO2934 propionate--CoA ligasechromosome CDS3133807 1890 + 0.633333
psd SPOA0292 phosphatidylserine decarboxylasemegaplasmid CDS322185 660 + 0.610606
pssA SPOA0293 CDP-diacylglycerol--serineO-phosphatidyltransferasemegaplasmid CDS322880 756 + 0.566138
uppS SPO1665 undecaprenyl diphosphate synthasechromosome CDS1772517 732 + 0.665301