Gene list
Applied filters:
COG category: Coenzyme transport and metabolism
Genomic element: chromosome
Number of genes found: 150
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shewanella oneidensis MR-1, MR-1 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
SO0025 | conserved hypothetical protein | chromosome | CDS | 30558 | 525 | + | 0.420952 | |
SO0027 | protoporphyrinogen oxidase, putative | chromosome | CDS | 31656 | 555 | + | 0.43964 | |
SO0131 | conserved hypothetical protein | chromosome | CDS | 140071 | 570 | - | 0.5 | |
SO0160 | transporter, putative | chromosome | CDS | 166258 | 1560 | - | 0.476923 | |
SO0413 | kinase, putative | chromosome | CDS | 428222 | 618 | - | 0.453074 | |
SO0506 | conserved hypothetical protein TIGR00148 | chromosome | CDS | 532473 | 1467 | - | 0.498296 | |
SO0585 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chromosome | CDS | 610994 | 936 | - | 0.502137 | |
SO0774 | 5-formyltetrahydrofolate cyclo-ligase family protein | chromosome | CDS | 786827 | 675 | - | 0.531852 | |
SO0778 | oxidoreductase, FAD-binding, UbiH/Coq6 family | chromosome | CDS | 790275 | 1224 | + | 0.556373 | |
SO1033 | iron-compound ABC transporter, ATP-binding protein, putative | chromosome | CDS | 1072108 | 858 | + | 0.487179 | |
SO1090 | ApbE family protein, putative | chromosome | CDS | 1128548 | 840 | + | 0.484524 | |
SO1183 | oxidoreductase, FAD-binding | chromosome | CDS | 1226116 | 1215 | + | 0.487243 | |
SO1321 | CobD-related protein | chromosome | CDS | 1374935 | 990 | - | 0.482828 | |
SO1418 | apbE family protein | chromosome | CDS | 1475755 | 1128 | - | 0.382979 | |
SO1478 | methylase, putative | chromosome | CDS | 1541126 | 774 | + | 0.489664 | |
SO1604 | 4'-phosphopantetheinyl transferase family protein | chromosome | CDS | 1687735 | 957 | + | 0.490073 | |
SO1667 | pterin-4-alpha-carbinolamine dehydratase | chromosome | CDS | 1754358 | 339 | + | 0.469027 | |
SO1910 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative | chromosome | CDS | 2008349 | 876 | - | 0.492009 | |
SO1981 | conserved hypothetical protein | chromosome | CDS | 2085532 | 1473 | + | 0.443313 | |
SO2103 | apbE family protein | chromosome | CDS | 2200732 | 828 | + | 0.496377 | |
SO2179 | hypothetical protein | chromosome | CDS | 2290975 | 876 | + | 0.484018 | |
SO2200 | ribosomal protein S6 modification protein, putative | chromosome | CDS | 2314957 | 993 | - | 0.436052 | |
SO2417 | iron-sulfur cluster-binding protein | chromosome | CDS | 2524374 | 435 | + | 0.489655 | |
SO2713 | transporter, putative | chromosome | CDS | 2831457 | 666 | - | 0.463964 | |
SO3108 | siroheme synthase, N-terminal component, putative | chromosome | CDS | 3236703 | 912 | - | 0.467105 | |
SO3359 | oxygen-independent coproporphyrinogen III oxidase, putative | chromosome | CDS | 3500972 | 1158 | + | 0.455959 | |
SO3497 | aminotransferase, class III | chromosome | CDS | 3647921 | 1341 | + | 0.494407 | |
SO3720 | conserved hypothetical protein | chromosome | CDS | 3866150 | 426 | - | 0.41784 | |
SO3877 | hypothetical protein | chromosome | CDS | 4025060 | 399 | + | 0.388471 | |
SO3895 | HesA/MoeB/ThiF family protein | chromosome | CDS | 4040229 | 804 | - | 0.480099 | |
SO3923 | thiH protein, putative | chromosome | CDS | 4070138 | 1440 | + | 0.490972 | |
SO3925 | biotin synthase family protein | chromosome | CDS | 4072216 | 1080 | + | 0.496296 | |
SO4283 | apbE family protein | chromosome | CDS | 4462599 | 1059 | + | 0.354108 | |
SO4316 | hemY protein, putative | chromosome | CDS | 4493603 | 1167 | + | 0.457584 | |
SO4520 | oxygen-independent coproporphyrinogen III oxidase, putative | chromosome | CDS | 4714407 | 1338 | + | 0.464126 | |
SO4550 | methyltransferase domain protein | chromosome | CDS | 4746578 | 639 | - | 0.458529 | |
SO4713 | menaquinone-specific isochorismate synthase, putative | chromosome | CDS | 4916550 | 1359 | + | 0.476085 | |
SO4719 | conserved hypothetical protein | chromosome | CDS | 4924191 | 825 | + | 0.469091 | |
SO4720 | ABC transporter, permease protein | chromosome | CDS | 4925012 | 708 | + | 0.504237 | |
SO4723 | molybdopterin biosynthesis MoeA protein, putative | chromosome | CDS | 4927038 | 1800 | + | 0.522222 | |
SO4724 | molybdenum cofactor biosynthesis protein A, putative | chromosome | CDS | 4928854 | 984 | + | 0.480691 | |
SO4727 | conserved hypothetical protein | chromosome | CDS | 4932064 | 639 | + | 0.4241 | |
apbE | thiamin biosynthesis lipoprotein ApbE | chromosome | CDS | 1152199 | 1044 | + | 0.441571 | |
bioA | adenosylmethionine--8-amino-7-oxononanoateaminot ransferase | chromosome | CDS | 2856886 | 1386 | + | 0.524531 | |
bioB | biotin synthase | chromosome | CDS | 2855711 | 1053 | - | 0.503324 | |
bioD | dethiobiotin synthase | chromosome | CDS | 2852586 | 696 | - | 0.45977 | |
bioF | 8-amino-7-oxononanoate synthase | chromosome | CDS | 2854284 | 1206 | - | 0.498342 | |
birA | birA bifunctional protein | chromosome | CDS | 224657 | 960 | + | 0.442708 | |
coaD | phosphopantetheine adenylyltransferase | chromosome | CDS | 4882671 | 492 | + | 0.495935 | |
cobA | uroporphyrin-III C-methyltransferase | chromosome | CDS | 3871804 | 831 | - | 0.488568 | |
cobO | cob(I)alamin adenosyltransferase | chromosome | CDS | 1078726 | 624 | + | 0.487179 | |
cobQ | cobyric acid synthase CobQ | chromosome | CDS | 1077178 | 1533 | + | 0.507502 | |
cobS | cobalamin 5'-phosphate synthase | chromosome | CDS | 1075576 | 789 | + | 0.487959 | |
cobT | nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase | chromosome | CDS | 1074417 | 1053 | + | 0.502374 | |
cobU | cobinamide kinase/cobinamide phosphate guanylyltransferase | chromosome | CDS | 1076361 | 606 | + | 0.509901 | |
cysD | sulfate adenylyltransferase, subunit 2 | chromosome | CDS | 3870815 | 909 | - | 0.470847 | |
cysH | phosphoadenosine phosphosulfate reductase | chromosome | CDS | 3880171 | 738 | - | 0.487805 | |
dfp | DNA/pantothenate metabolism flavoprotein | chromosome | CDS | 4426076 | 1227 | + | 0.512632 | |
dxs | deoxyxylulose-5-phosphate synthase | chromosome | CDS | 1601183 | 1869 | - | 0.501338 | |
folA | dihydrofolate reductase | chromosome | CDS | 3803928 | 483 | - | 0.438923 | |
folB | dihydroneopterin aldolase | chromosome | CDS | 1342213 | 351 | + | 0.45584 | |
folC | FolC bifunctional protein | chromosome | CDS | 3183345 | 1296 | - | 0.506944 | |
folD | methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase | chromosome | CDS | 1878808 | 855 | - | 0.493567 | |
folE | GTP cyclohydrolase I | chromosome | CDS | 4430777 | 651 | + | 0.477727 | |
folK-1 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase | chromosome | CDS | 901020 | 489 | - | 0.476483 | |
folK-2 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase | chromosome | CDS | 1342606 | 504 | + | 0.438492 | |
folP | dihydropteroate synthase | chromosome | CDS | 1241974 | 834 | + | 0.5 | |
folX | D-erythro-7,8-dihydroneopterin triphosphate epimerase | chromosome | CDS | 3052942 | 369 | + | 0.430894 | |
fre | NAD(P)H-flavin reductase | chromosome | CDS | 530850 | 699 | - | 0.515021 | |
gshA | glutamate--cysteine ligase | chromosome | CDS | 3716992 | 1695 | - | 0.465487 | |
gshB | glutathione synthetase | chromosome | CDS | 849536 | 948 | - | 0.501055 | |
hemA | glutamyl-tRNA reductase | chromosome | CDS | 3983506 | 1251 | - | 0.482814 | |
hemB-1 | delta-aminolevulinic acid dehydratase | chromosome | CDS | 2713793 | 1002 | + | 0.511976 | |
hemB-2 | delta-aminolevulinic acid dehydratase | chromosome | CDS | 4374591 | 1011 | + | 0.487636 | |
hemC | porphobilinogen deaminase | chromosome | CDS | 4490624 | 933 | + | 0.508039 | |
hemD | uroporphyrinogen-III synthase | chromosome | CDS | 4491561 | 741 | + | 0.496626 | |
hemE | uroporphyrinogen decarboxylase | chromosome | CDS | 459487 | 1065 | + | 0.477934 | |
hemF | coproporphyrinogen III oxidase, aerobic | chromosome | CDS | 42152 | 909 | + | 0.508251 | |
hemH-1 | ferrochelatase | chromosome | CDS | 2118185 | 1047 | + | 0.499522 | |
hemH-2 | ferrochelatase | chromosome | CDS | 3493111 | 984 | - | 0.468496 | |
hemL | glutamate-1-semialdehyde-2,1-aminomutase | chromosome | CDS | 1352002 | 1293 | - | 0.5058 | |
hemN | oxygen-independent coproporphyrinogen III oxidase | chromosome | CDS | 4934130 | 1377 | + | 0.458969 | |
hemX | hemX protein | chromosome | CDS | 4492362 | 1245 | + | 0.481928 | |
hprA | glycerate dehydrogenase | chromosome | CDS | 3789338 | 957 | - | 0.490073 | |
ilvB | acetolactate synthase isozyme I, large subunit | chromosome | CDS | 3397800 | 1746 | + | 0.438144 | |
ilvC | ketol-acid reductoisomerase | chromosome | CDS | 4541742 | 1479 | - | 0.491548 | |
ilvE | branched-chain amino acid aminotransferase | chromosome | CDS | 340328 | 1092 | + | 0.486264 | |
ilvG | acetolactate synthase II, large subunit | chromosome | CDS | 4539490 | 1659 | - | 0.523207 | |
ilvI | acetolactate synthase III, large subunit | chromosome | CDS | 2389858 | 1719 | - | 0.46655 | |
ispA | geranyltranstransferase | chromosome | CDS | 1603073 | 882 | - | 0.478458 | |
ispB | octaprenyl-diphosphate synthase | chromosome | CDS | 3807924 | 972 | + | 0.471193 | |
kbl | 2-amino-3-ketobutyrate coenzyme A ligase | chromosome | CDS | 4871990 | 1194 | - | 0.490787 | |
ldhA | D-lactate dehydrogenase | chromosome | CDS | 1000301 | 990 | - | 0.470707 | |
lipA | lipoic acid synthetase | chromosome | CDS | 1204274 | 966 | - | 0.517598 | |
lipB | lipoate-protein ligase B | chromosome | CDS | 1205236 | 660 | - | 0.501515 | |
menB | naphthoate synthase | chromosome | CDS | 4950014 | 903 | + | 0.48505 | |
menC | O-succinylbenzoate-CoA synthase | chromosome | CDS | 4769562 | 1125 | + | 0.478222 | |
menD | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase | chromosome | CDS | 4766990 | 1722 | + | 0.507549 | |
menG-1 | S-adenosylmethionine:2-demethylmenaquinonemethyl transferase | chromosome | CDS | 2697978 | 495 | - | 0.416162 | |
menG-2 | S-adenosylmethionine:2-demethylmenaquinonemethyl transferase | chromosome | CDS | 4364881 | 486 | + | 0.485597 | |
metK | S-adenosylmethionine synthetase | chromosome | CDS | 957987 | 1152 | - | 0.482639 | |
moaA | molybdenum cofactor biosynthesis protein A | chromosome | CDS | 4640134 | 981 | - | 0.470948 | |
moaC | molybdenum cofactor biosynthesis protein C | chromosome | CDS | 4639541 | 480 | - | 0.50625 | |
moaD | molybdenum cofactor biosynthesis protein D | chromosome | CDS | 4639270 | 252 | - | 0.496032 | |
moaE | molybdenum cofactor biosynthesis protein E | chromosome | CDS | 4638801 | 468 | - | 0.521368 | |
mobA | molybdopterin-guanine dinucleotide biosynthesis protein | chromosome | CDS | 4926414 | 594 | + | 0.508417 | |
moeA | molybdopterin biosynthesis MoeA protein | chromosome | CDS | 144154 | 1254 | - | 0.512759 | |
moeB | molybdopterin biosynthesis MoeB protein | chromosome | CDS | 143381 | 762 | - | 0.469816 | |
mog | molybdenum cofactor biosynthesis protein Mog | chromosome | CDS | 71134 | 534 | + | 0.5 | |
nad | nicotinate (nicotinamide) nucleotide adenylyltransferase | chromosome | CDS | 1213530 | 639 | - | 0.478873 | |
nadA | quinolinate synthetase complex, subunit A | chromosome | CDS | 2450283 | 1074 | + | 0.472998 | |
nadB | L-aspartate oxidase | chromosome | CDS | 1397393 | 1614 | - | 0.489467 | |
nadE | NH(3)-dependent NAD(+) synthetase | chromosome | CDS | 2120953 | 831 | + | 0.482551 | |
pabA | para-aminobenzoate synthase glutamine amidotransferase, component II | chromosome | CDS | 637616 | 576 | + | 0.477431 | |
pabB | para-aminobenzoate synthase, component I | chromosome | CDS | 2335512 | 1404 | - | 0.482906 | |
pabC | 4-amino-4-deoxychorismate lyase | chromosome | CDS | 2751361 | 810 | - | 0.496296 | |
panB | 3-methyl-2-oxobutanoate hydroxymethyltransferase | chromosome | CDS | 900169 | 795 | - | 0.501887 | |
panC | pantoate--beta-alanine ligase | chromosome | CDS | 899247 | 846 | - | 0.485816 | |
panE | 2-dehydropantoate 2-reductase | chromosome | CDS | 3968045 | 984 | + | 0.489837 | |
panK | pantothenate kinase | chromosome | CDS | 225619 | 951 | - | 0.440589 | |
pdxA | pyridoxal phosphate biosynthetic protein PdxA | chromosome | CDS | 3797649 | 987 | + | 0.490375 | |
pdxB | erythronate-4-phosphate dehydrogenase | chromosome | CDS | 3190127 | 1131 | - | 0.469496 | |
pdxH | pyridoxamine 5'-phosphate oxidase | chromosome | CDS | 3016931 | 639 | - | 0.471049 | |
pdxJ | pyridoxal phosphate biosynthetic protein PdxJ | chromosome | CDS | 1407463 | 738 | + | 0.48645 | |
ribA | GTP cyclohydrolase II | chromosome | CDS | 2948996 | 612 | - | 0.439542 | |
ribB | 3,4-dihydroxy-2-butanone 4-phosphate synthase | chromosome | CDS | 150203 | 654 | - | 0.519878 | |
ribBA | 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative | chromosome | CDS | 3612338 | 1104 | - | 0.491848 | |
ribD | riboflavin biosynthesis protein RibD | chromosome | CDS | 3614172 | 1146 | - | 0.513962 | |
ribE-1 | riboflavin synthase, alpha subunit | chromosome | CDS | 2408811 | 621 | + | 0.436393 | |
ribE-2 | riboflavin synthase, alpha subunit | chromosome | CDS | 3613508 | 657 | - | 0.482496 | |
ribF | riboflavin biosynthesis protein RibF | chromosome | CDS | 3688663 | 936 | - | 0.467949 | |
ribH | riboflavin synthase, beta subunit | chromosome | CDS | 3611721 | 477 | - | 0.459119 | |
rimK-1 | ribosomal protein S6 modification protein | chromosome | CDS | 568931 | 906 | + | 0.465784 | |
rimK-2 | ribosomal protein S6 modification protein | chromosome | CDS | 2383894 | 900 | + | 0.482222 | |
serA | D-3-phosphoglycerate dehydrogenase | chromosome | CDS | 890275 | 1230 | - | 0.484553 | |
serC | phosphoserine aminotransferase | chromosome | CDS | 2514676 | 1104 | - | 0.468297 | |
thiC | thiamin biosynthesis protein ThiC | chromosome | CDS | 2558537 | 2166 | - | 0.510157 | |
thiDE | phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative | chromosome | CDS | 2556957 | 1581 | - | 0.500316 | |
thiF | thiF protein, putative | chromosome | CDS | 2556058 | 903 | - | 0.48505 | |
thiG | thiG protein | chromosome | CDS | 2555092 | 765 | - | 0.517647 | |
thiH | thiH protein | chromosome | CDS | 2553968 | 1128 | - | 0.47961 | |
thiL | thiamin-monophosphate kinase | chromosome | CDS | 3610267 | 957 | - | 0.491118 | |
thiS | thiS protein, putative | chromosome | CDS | 2555858 | 204 | - | 0.416667 | |
trpE | anthranilate synthase component I | chromosome | CDS | 3129858 | 1725 | + | 0.497971 | |
trpG | glutamine amido-transferase | chromosome | CDS | 3131593 | 609 | + | 0.505747 | |
ubiA | 4-hydroxybenzoate polyprenyl transferase | chromosome | CDS | 493080 | 861 | + | 0.466899 | |
ubiE | ubiquinone/menaquinone biosynthesis methlytransferase UbiE | chromosome | CDS | 4366790 | 756 | + | 0.478836 | |
ubiG | 3-demethylubiquinone-9 3-methyltransferase | chromosome | CDS | 2519024 | 711 | + | 0.455696 | |
ubiH | 2-octaprenyl-6-methoxyphenol hydroxylase | chromosome | CDS | 789015 | 1224 | + | 0.513889 | |
ubiX | phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative | chromosome | CDS | 3958550 | 660 | - | 0.513636 |