Gene list
Applied filters:
COG category: Coenzyme transport and metabolism
Genomic element: chromosome
Number of genes found: 144
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Silicibacter pomeroyi DSS-3, DSS-3 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SPO1602 | trimethylamine methyltransferase family protein | chromosome | CDS | 1697521 | 1509 | - | 0.705103 |
NA | SPO3471 | aminotransferase, class III | chromosome | CDS | 3674581 | 1395 | + | 0.620072 |
NA | SPO0405 | cobinamide kinase/cobinamide phosphate guanyltransferase | chromosome | CDS | 417761 | 525 | - | 0.638095 |
NA | SPO3153 | monooxygenase, putative | chromosome | CDS | 3360454 | 1692 | + | 0.647754 |
NA | SPO1700 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chromosome | CDS | 1811125 | 969 | + | 0.625387 |
NA | SPO2422 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chromosome | CDS | 2573459 | 942 | - | 0.654989 |
NA | SPO2108 | trimethylamine methyltransferase family protein | chromosome | CDS | 2243870 | 1545 | - | 0.646602 |
NA | SPO0913 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chromosome | CDS | 966937 | 954 | + | 0.66457 |
NA | SPO2385 | benzaldehyde lyase, putative | chromosome | CDS | 2529082 | 1731 | + | 0.619873 |
NA | SPO0167 | trimethylamine methyltransferase family protein | chromosome | CDS | 187255 | 1569 | - | 0.645634 |
NA | SPO2056 | thiamine-phosphate pyrophosphorylase, putative | chromosome | CDS | 2188790 | 621 | + | 0.695652 |
NA | SPO0415 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chromosome | CDS | 427642 | 948 | - | 0.654008 |
NA | SPO0388 | aminotransferase, class IV | chromosome | CDS | 400950 | 864 | - | 0.655093 |
NA | SPO0006 | oxygen-independent coproporphyrinogen III oxidase, putative | chromosome | CDS | 4536 | 1158 | - | 0.630397 |
NA | SPO3419 | ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | chromosome | CDS | 3622756 | 1263 | + | 0.678543 |
NA | SPO1791 | sulfate/tungstate uptake family ABC transporter, periplasmic substrate-binding protein | chromosome | CDS | 1906992 | 816 | + | 0.66299 |
NA | SPO0632 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chromosome | CDS | 653027 | 987 | + | 0.653495 |
NA | SPO2954 | 5-formyltetrahydrofolate cyclo-ligase family protein | chromosome | CDS | 3153136 | 558 | - | 0.702509 |
NA | SPO1401 | aminotransferase, class III | chromosome | CDS | 1470439 | 1323 | + | 0.673469 |
NA | SPO1166 | aminotransferase, class III family | chromosome | CDS | 1215666 | 1353 | - | 0.624538 |
NA | SPO2750 | trimethylamine methyltransferase family protein | chromosome | CDS | 2942424 | 1560 | - | 0.648077 |
NA | SPO2799 | molybdenum cofactor biosynthesis protein A | chromosome | CDS | 2986945 | 1008 | + | 0.618056 |
NA | SPO0049 | thiamine biosynthesis protein ThiF | chromosome | CDS | 49417 | 984 | + | 0.64126 |
NA | SPO3604 | D-amino acid aminotransferase, putative | chromosome | CDS | 3810300 | 861 | - | 0.602787 |
NA | SPO1804 | conserved hypothetical protein | chromosome | CDS | 1921535 | 708 | + | 0.689266 |
NA | SPO3354 | phosphoserine aminotransferase | chromosome | CDS | 3552346 | 1182 | + | 0.646362 |
NA | SPO3289 | phenylacetate-CoA ligase, putative | chromosome | CDS | 3487873 | 1218 | - | 0.665025 |
NA | SPO2134 | trimethylamine methyltransferase family protein | chromosome | CDS | 2267949 | 1545 | + | 0.654369 |
NA | SPO0291 | molybdenum cofactor biosynthesis protein B | chromosome | CDS | 302852 | 543 | + | 0.626151 |
NA | SPO2863 | CobN | chromosome | CDS | 3060642 | 3294 | + | 0.676685 |
NA | SPO1801 | conserved domain protein | chromosome | CDS | 1919486 | 729 | - | 0.668038 |
NA | SPO2639 | molybdopterin biosynthesis protein | chromosome | CDS | 2792216 | 1041 | - | 0.715658 |
NA | SPO2625 | conserved domain protein | chromosome | CDS | 2778591 | 654 | + | 0.701835 |
NA | SPO0410 | molybdopterin biosynthesis protein MoeB, putative | chromosome | CDS | 421878 | 1041 | + | 0.667627 |
NA | SPO2762 | biotin--acetyl-CoA-carboxylase ligase | chromosome | CDS | 2952399 | 750 | - | 0.686667 |
NA | SPO1570 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chromosome | CDS | 1660969 | 993 | + | 0.667674 |
NA | SPO2855 | cobalt chelatase, pCobT subunit | chromosome | CDS | 3051930 | 1878 | + | 0.668797 |
NA | SPO3633 | molybdopterin converting factor, subunit 2 | chromosome | CDS | 3835239 | 444 | - | 0.650901 |
NA | SPO1789 | sulfate/tungstate uptake family ABC transporter, permease protein | chromosome | CDS | 1905532 | 714 | + | 0.654062 |
NA | SPO0565 | trimethylamine methyltransferase family protein | chromosome | CDS | 566124 | 1524 | + | 0.67126 |
NA | SPO3244 | L-aspartate oxidase, putative | chromosome | CDS | 3446850 | 1551 | + | 0.720825 |
NA | SPO3101 | folD bifunctional protein | chromosome | CDS | 3311973 | 891 | - | 0.664422 |
NA | SPO2412 | aldolase, putative | chromosome | CDS | 2563843 | 696 | + | 0.675287 |
NA | SPO1136 | aminotransferase, class III | chromosome | CDS | 1191289 | 1374 | - | 0.634643 |
NA | SPO3853 | uroporphyrinogen-III synthase, putative | chromosome | CDS | 4069017 | 714 | - | 0.684874 |
NA | SPO1559 | folD bifunctional protein | chromosome | CDS | 1648760 | 891 | + | 0.664422 |
NA | SPO1422 | cobalamin 5'-phosphate synthase | chromosome | CDS | 1492825 | 765 | - | 0.724183 |
NA | SPO3291 | branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid binding protein, putative | chromosome | CDS | 3490052 | 1284 | - | 0.621495 |
NA | SPO2883 | thiamine pyrophosphate-binding domain protein | chromosome | CDS | 3080178 | 1551 | - | 0.682141 |
NA | SPO2885 | acetolactate synthase, catabolic, putative | chromosome | CDS | 3082404 | 1620 | + | 0.685185 |
NA | SPO0105 | monooxygenase family protein | chromosome | CDS | 108119 | 1260 | - | 0.660317 |
NA | SPO0682 | monooxygenase family protein | chromosome | CDS | 711175 | 1662 | - | 0.638989 |
NA | SPO2141 | pyridoxamine 5''-phosphate oxidase, putative | chromosome | CDS | 2276242 | 630 | - | 0.644444 |
NA | SPO1761 | 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative | chromosome | CDS | 1881259 | 1122 | + | 0.656863 |
NA | SPO3851 | HemY domain protein | chromosome | CDS | 4066155 | 1482 | - | 0.65857 |
NA | SPO3903 | 6-pyruvoyl tetrahydropterin synthase, putative | chromosome | CDS | 3963192 | 357 | + | 0.610644 |
NA | SPO2005 | aminotransferase, class III | chromosome | CDS | 2133365 | 1332 | - | 0.659159 |
NA | SPO3263 | hypothetical protein | chromosome | CDS | 3461163 | 453 | + | 0.622517 |
NA | SPO3692 | monooxygenase, putative | chromosome | CDS | 3901098 | 1188 | + | 0.661616 |
NA | SPO0925 | conserved hypothetical protein | chromosome | CDS | 982206 | 648 | + | 0.70679 |
NA | SPO1371 | 2-octaprenyl-6-methoxyphenol hydroxylase, putative | chromosome | CDS | 1437104 | 1197 | - | 0.678363 |
NA | SPO1321 | thiamine pyrophosphokinase | chromosome | CDS | 1384220 | 693 | + | 0.691198 |
ahcY | SPO3861 | adenosylhomocysteinase | chromosome | CDS | 4074441 | 1389 | - | 0.609791 |
bioB | SPO3338 | biotin synthase | chromosome | CDS | 3540260 | 957 | - | 0.672936 |
coaBC | SPO0408 | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase | chromosome | CDS | 420163 | 1197 | + | 0.680869 |
coaD | SPO2200 | pantetheine-phosphate adenylyltransferase | chromosome | CDS | 2339581 | 498 | - | 0.654619 |
coaE | SPO3890 | dephospho-CoA kinase | chromosome | CDS | 4103834 | 594 | - | 0.632997 |
cobA-1 | SPO2632 | uroporphyrin-III C-methyltransferase | chromosome | CDS | 2786378 | 777 | + | 0.693694 |
cobA-2 | SPO2873 | uroporphyrin-III C-methyltransferase | chromosome | CDS | 3071547 | 729 | + | 0.69273 |
cobB | SPO2872 | cobyrinic acid a,c-diamide synthase | chromosome | CDS | 3070255 | 1296 | + | 0.699846 |
cobD | SPO3225 | cobalamin biosynthesis protein CobD | chromosome | CDS | 3429703 | 921 | + | 0.679696 |
cobF | SPO2874 | precorrin-6A synthase | chromosome | CDS | 3072268 | 744 | + | 0.670699 |
cobH | SPO2865 | precorrin-8X methylmutase | chromosome | CDS | 3065059 | 630 | + | 0.685714 |
cobI | SPO2866 | precorrin-2 C20-methyltransferase | chromosome | CDS | 3065685 | 729 | + | 0.66118 |
cobJ | SPO2867 | precorrin-3B C17-methyltransferase | chromosome | CDS | 3066410 | 753 | + | 0.665339 |
cobK | SPO2868 | precorrin-6x reductase | chromosome | CDS | 3067135 | 753 | - | 0.678619 |
cobL | SPO2869 | precorrin-6Y C5,15-methyltransferase (decarboxylating) | chromosome | CDS | 3067886 | 1200 | + | 0.7025 |
cobM | SPO2871 | precorrin-4 C11-methyltransferase | chromosome | CDS | 3069447 | 795 | + | 0.665409 |
cobO | SPO0262 | cob(I)alamin adenosyltransferase | chromosome | CDS | 280092 | 600 | - | 0.641667 |
cobQ | SPO1242 | cobyric acid synthase CobQ | chromosome | CDS | 1310964 | 1458 | - | 0.685871 |
cobU | SPO1423 | nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase | chromosome | CDS | 1493668 | 1011 | + | 0.709199 |
cysH | SPO2635 | phosophoadenylyl-sulfate reductase | chromosome | CDS | 2789186 | 762 | + | 0.656168 |
ddsA | SPO0319 | decaprenyl diphosphate synthase | chromosome | CDS | 331351 | 999 | - | 0.654655 |
dxs | SPO0247 | 1-deoxy-D-xylulose-5-phosphate synthase | chromosome | CDS | 267660 | 1929 | - | 0.659409 |
folC | SPO3818 | folC bifunctional protein | chromosome | CDS | 4034465 | 1275 | + | 0.679216 |
folD | SPO1560 | folD bifunctional protein | chromosome | CDS | 1649647 | 879 | + | 0.650739 |
folK | SPO3205 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase | chromosome | CDS | 3416475 | 567 | - | 0.61552 |
folP | SPO1363 | dihydropteroate synthase | chromosome | CDS | 1428875 | 795 | + | 0.669182 |
gshA | SPO3626 | glutamate--cysteine ligase | chromosome | CDS | 3828329 | 1371 | - | 0.648432 |
gshB | SPO0401 | glutathione synthetase | chromosome | CDS | 413677 | 933 | + | 0.625938 |
hemA-1 | SPO2596 | 5-aminolevulinic acid synthase | chromosome | CDS | 2751613 | 1224 | - | 0.633987 |
hemB | SPO2076 | porphobilinogen synthase | chromosome | CDS | 2210595 | 999 | + | 0.657658 |
hemC | SPO3649 | porphobilinogen deaminase | chromosome | CDS | 3851322 | 960 | + | 0.688542 |
hemE | SPO3648 | uroporphyrinogen decarboxylase | chromosome | CDS | 3850181 | 1035 | - | 0.661836 |
hemF | SPO3653 | coproporphyrinogen III oxidase, aerobic | chromosome | CDS | 3855759 | 885 | - | 0.648588 |
hemH | SPO0073 | ferrochelatase | chromosome | CDS | 74429 | 996 | + | 0.629518 |
hemL | SPO1597 | glutamate-1-semialdehyde 2,1-aminomutase | chromosome | CDS | 1692095 | 1275 | + | 0.672941 |
hemN | SPO3532 | oxygen-independent coproporphyrinogen III oxidase | chromosome | CDS | 3740159 | 1356 | + | 0.643068 |
ilvB | SPO2578 | acetolactate synthase, large subunit, biosynthetic type | chromosome | CDS | 2730491 | 1752 | + | 0.630708 |
ilvC | SPO1366 | ketol-acid reductoisomerase | chromosome | CDS | 1432639 | 1023 | - | 0.623656 |
ilvE | SPO0253 | branched-chain amino acid aminotransferase | chromosome | CDS | 273044 | 867 | + | 0.636678 |
ispA | SPO0248 | farnesyl diphosphate synthase | chromosome | CDS | 269616 | 867 | - | 0.688581 |
kbl | SPO3360 | 2-amino-3-ketobutyrate coenzyme A ligase | chromosome | CDS | 3558594 | 1185 | - | 0.648101 |
lipA | SPO2102 | lipoic acid synthetase | chromosome | CDS | 2238776 | 951 | - | 0.645636 |
lipB | SPO1389 | lipoate-protein ligase B | chromosome | CDS | 1456579 | 651 | - | 0.654378 |
moaA | SPO2153 | molybdenum cofactor biosynthesis protein A | chromosome | CDS | 2288113 | 1170 | + | 0.659829 |
moaC | SPO2152 | molybdenum cofactor biosynthesis protein C | chromosome | CDS | 2287643 | 474 | + | 0.622363 |
moaD | SPO3634 | molybdopterin converting factor, subunit 1 | chromosome | CDS | 3835688 | 246 | - | 0.686992 |
mobA | SPO0307 | molybdopterin-guanine dinucleotide biosynthesis protein A | chromosome | CDS | 320619 | 636 | + | 0.694969 |
mobB | SPO0308 | molybdopterin-guanine dinucleotide biosynthesis protein B | chromosome | CDS | 321251 | 492 | + | 0.654472 |
moeA | SPO0310 | molybdopterin biosynthesis protein MoeA | chromosome | CDS | 322536 | 1260 | + | 0.7 |
nadA | SPO3243 | quinolinate synthetase complex, A subunit | chromosome | CDS | 3445790 | 1053 | + | 0.633428 |
nadC | SPO3245 | nicotinate-nucleotide pyrophosphorylase | chromosome | CDS | 3448397 | 867 | + | 0.678201 |
nadD | SPO0449 | nicotinate (nicotinamide) nucleotide adenylyltransferase | chromosome | CDS | 460454 | 642 | + | 0.688474 |
nahG | SPO2510 | salicylate hydroxylase | chromosome | CDS | 2657585 | 1167 | - | 0.717224 |
paaF | SPO0742 | phenylacetate-CoA ligase | chromosome | CDS | 772101 | 1311 | + | 0.627765 |
pabB | SPO0924 | para-aminobenzoate synthase component I | chromosome | CDS | 981130 | 1122 | + | 0.68984 |
panB | SPO0102 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | chromosome | CDS | 104880 | 840 | + | 0.661905 |
panC | SPO0103 | pantoate--beta-alanine ligase | chromosome | CDS | 105716 | 858 | + | 0.667832 |
panE-1 | SPO0966 | 2-dehydropantoate 2-reductase | chromosome | CDS | 1017416 | 996 | + | 0.703815 |
panE-2 | SPO1601 | 2-dehydropantoate 2-reductase | chromosome | CDS | 1696589 | 936 | - | 0.69765 |
pdxA-1 | SPO2457 | 4-hydroxythreonine-4-phosphate dehydrogenase | chromosome | CDS | 2611284 | 960 | + | 0.708333 |
pdxJ | SPO3201 | pyridoxal phosphate biosynthetic protein PdxJ | chromosome | CDS | 3412399 | 747 | - | 0.662651 |
phhB | SPO3733 | 4a-hydroxytetrahydrobiopterin dehydratase | chromosome | CDS | 3945994 | 294 | + | 0.612245 |
pncB | SPO0095 | nicotinate phosphoribosyltransferase | chromosome | CDS | 95526 | 1344 | + | 0.627976 |
pqqC | SPO1502 | coenzyme PQQ synthesis protein C | chromosome | CDS | 1577736 | 726 | - | 0.666667 |
ribBA | SPO3427 | 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II | chromosome | CDS | 3630346 | 1092 | + | 0.678571 |
ribD | SPO1754 | riboflavin biosynthesis protein RibD | chromosome | CDS | 1873910 | 1095 | + | 0.713242 |
ribE | SPO1759 | riboflavin synthase, alpha subunit | chromosome | CDS | 1879908 | 588 | + | 0.670068 |
ribF | SPO3154 | riboflavin biosynthesis protein RibF | chromosome | CDS | 3362242 | 933 | + | 0.664523 |
ribH-1 | SPO0268 | riboflavin synthase, beta subunit | chromosome | CDS | 285959 | 738 | - | 0.653117 |
ribH-2 | SPO1762 | riboflavin synthase, beta subunit | chromosome | CDS | 1882382 | 552 | + | 0.653986 |
serA | SPO3355 | D-3-phosphoglycerate dehydrogenase | chromosome | CDS | 3553615 | 1596 | + | 0.625313 |
thiD | SPO0045 | phosphomethylpyrimidine kinase | chromosome | CDS | 46122 | 804 | + | 0.654229 |
thiE | SPO0048 | thiamine-phosphate pyrophosphorylase | chromosome | CDS | 48842 | 597 | + | 0.646566 |
thiG | SPO0047 | thiazole biosynthesis protein ThiG | chromosome | CDS | 48081 | 765 | + | 0.653595 |
thiS | SPO0046.1 | thiamine biosynthesis protein ThiS | chromosome | CDS | 47883 | 195 | + | 0.661538 |
tpa | SPO0673 | taurine--pyruvate aminotransferase | chromosome | CDS | 701701 | 1398 | - | 0.630186 |
trpE | SPO2146 | anthranilate synthase component I | chromosome | CDS | 2281509 | 1512 | + | 0.65873 |
trpG | SPO2149 | anthranilate synthase component II | chromosome | CDS | 2285237 | 582 | + | 0.635739 |
ubiA | SPO3630 | 4-hydroxybenzoate polyprenyl transferase | chromosome | CDS | 3831971 | 963 | + | 0.655244 |
ubiE | SPO0145 | ubiquinone/menaquinone biosynthesis methyltransferase UbiE | chromosome | CDS | 160766 | 774 | - | 0.616279 |
ubiG | SPO0067 | 3-demethylubiquinone-9 3-methyltransferase | chromosome | CDS | 70268 | 747 | + | 0.634538 |
xsc | SPO3561 | sulphoacetaldehyde acetyltransferase | chromosome | CDS | 3773624 | 1791 | - | 0.654383 |