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2024-05-06 02:48:34

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough

Number of genes found: 133

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Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA DVU0643 thiF protein, putativechromosome CDS713684 693 + 0.669553
NA DVU0971 molybdenum cofactor biosynthesis proteinchromosome CDS1067825 507 + 0.648915
NA DVU1560 molybdopterin biosynthesis protein, putativechromosome CDS1639590 1020 - 0.627451
NA DVU2212 conserved hypothetical proteinchromosome CDS2309563 363 + 0.586777
NA DVU0650 chelatase, putativechromosome CDS720601 894 - 0.676734
NA DVU3057 oxygen-independent coproporphyrinogen III oxidase, putativechromosome CDS3183675 1494 + 0.670683
NA DVU1767 radical SAM domain proteinchromosome CDS1830125 969 + 0.648091
NA DVU0978 ABC transporter, periplasmic substrate-binding protein, putativechromosome CDS1073542 855 + 0.631579
NA DVU0136 hypothetical proteinchromosome CDS172638 219 - 0.634703
NA DVU2475 oxidoreductase, NAD-binding, putativechromosome CDS2583408 843 + 0.628707
NA DVU2237 cobalamin biosynthesis protein CobD, putativechromosome CDS2329256 963 - 0.678089
NA DVU0371 conserved hypothetical proteinchromosome CDS418412 1425 + 0.600702
NA DVU1523 hypothetical proteinchromosome CDS1591191 1029 + 0.635568
NA DVU0648 iron compound ABC transporter, ATP-binding proteinchromosome CDS718732 816 - 0.677696
NA DVU2657 6-pyruvoyl tetrahydrobiopterin synthase, putativechromosome CDS2770045 363 - 0.600551
NA DVU0769 pyridoxal kinase, putativechromosome CDS859823 879 - 0.63595
NA DVU1349 geranylgeranyl diphosphate synthasechromosome CDS1426709 864 + 0.649306
NA DVU2092 thiF family proteinchromosome CDS2181488 642 - 0.668224
NA DVU1407 radical SAM domain proteinchromosome CDS1475979 1476 - 0.629404
NA DVU0295 amine oxidase, flavin-containingchromosome CDS340483 1350 + 0.637037
NA DVU0465 anthranilate synthase, component Ichromosome CDS532853 1599 + 0.67167
NA DVU2756 radical SAM domain proteinchromosome CDS2864853 1119 + 0.653262
NA DVU1835 biotin--acetyl-CoA-carboxylase ligasechromosome CDS1905994 915 - 0.631694
NA DVU2320 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family proteinchromosome CDS2415017 1839 + 0.661773
NA DVU1765 thiH protein, putativechromosome CDS1827335 1395 + 0.629391
NA DVU3253 phenylacetate-coenzyme A ligase, putativechromosome CDS3425041 1266 + 0.630332
NA DVU0366 5-formyltetrahydrofolate cyclo-ligase family proteinchromosome CDS415077 852 - 0.693662
NA DVU2798 ApbE family proteinchromosome CDS2899744 1011 + 0.690406
NA DVU0103 cation ABC transporter, ATP-binding protein, putativechromosome CDS136146 942 + 0.68896
NA DVU0088 Sodium/pantothenate symporterchromosome CDS112393 1488 + 0.635753
NA DVU3017 conserved domain proteinchromosome CDS3132813 909 - 0.658966
NA DVU0589 molybdopterin-guanine dinucleotide biosynthesis protein B, putativechromosome CDS657590 741 + 0.661269
NA DVU0745 ABC transporter, periplasmic substrate-binding proteinchromosome CDS834410 819 + 0.604396
NA DVU0973 4-hydroxybenzoate octaprenyltransferase, putativechromosome CDS1069632 870 + 0.610345
NA DVU0579 molybdopterin-guanine dinucleotide biosynthesis protein A, putativechromosome CDS643259 669 + 0.650224
NA DVU1463 siroheme synthase, N-terminal domain proteinchromosome CDS1542188 678 - 0.662242
NA DVU0746 ABC transporter, permease proteinchromosome CDS835639 747 + 0.657296
NA DVU3293 thiamine pyrophosphate-requiring enzymechromosome CDS3469747 1644 + 0.663625
NA DVU1566 phosphoadenosine phosphosulfate reductase, putativechromosome CDS1648971 768 + 0.614583
NA DVU0734 uroporphyrinogen III synthase/methyltransferasechromosome CDS819967 1512 + 0.64881
NA DVUA0064 conserved domain proteinpDV CDS80843 2043 + 0.718551
NA DVU0951 molybdopterin biosynthesis MoeA protein, putativechromosome CDS1043957 1338 + 0.65994
NA DVU1111 hypothetical proteinchromosome CDS1216652 1686 - 0.686833
NA DVU0175 tungsten formylmethanofuran dehydrogenase family protein/molybdopterin binding proteinchromosome CDS219258 1632 - 0.654412
NA DVU1412 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS1481630 981 - 0.626911
NA DVU0101 methlytransferase, UbiE/COQ5 familychromosome CDS133407 1527 + 0.692207
NA DVU3047 aminotransferase, class IVchromosome CDS3173003 948 - 0.661392
NA DVU0339 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS384768 906 - 0.679912
NA DVU1180 hypothetical proteinchromosome CDS1271134 225 - 0.626667
NA DVU1756 hypothetical proteinchromosome CDS1821372 264 + 0.587121
NA DVU1365 heme-binding protein, putativechromosome CDS1444130 849 + 0.631331
NA DVU2757 radical SAM domain proteinchromosome CDS2865968 1128 + 0.657801
NA DVU2127 von Willebrand factor type A domain proteinchromosome CDS2222596 1263 + 0.634204
NA DVU1553 AMP-binding proteinchromosome CDS1629739 1350 - 0.653333
NA DVU1352 6-pyruvoyl tetrahydrobiopterin synthase, putativechromosome CDS1430512 390 - 0.602564
NA DVU3091 conserved hypothetical proteinchromosome CDS3234266 1347 + 0.682257
NA DVU3002 conserved domain proteinchromosome CDS3112881 1149 - 0.653612
NA DVU0362 conserved hypothetical proteinchromosome CDS411461 780 - 0.674359
NA DVU2399 hydrogenase, putativechromosome CDS2502951 852 - 0.646714
ahcY DVU0607 adenosylhomocysteinasechromosome CDS675159 1440 + 0.623611
bioA DVU2559 adenosylmethionine--8-amino-7-oxononanoateaminot ransferasechromosome CDS2670824 1629 + 0.674033
bioB DVU2558 biotin synthasechromosome CDS2669895 933 + 0.65059
bioD DVU2565 dethiobiotin synthetasechromosome CDS2677915 741 + 0.654521
bioF DVU2564 8-amino-7-oxononanoate synthasechromosome CDS2676659 1275 + 0.675294
birA DVU2557 birA bifunctional proteinchromosome CDS2668667 993 - 0.667674
cbiD DVU2750 cobalamin biosynthesis protein CbiDchromosome CDS2858736 1170 - 0.700855
cbiG DVU3169 cobalamin biosynthesis protein CbiGchromosome CDS3325298 1197 + 0.690894
coaBC DVU3353 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligasechromosome CDS3524067 1215 + 0.669959
coaD DVU1532 pantetheine-phosphate adenylyltransferasechromosome CDS1600299 561 + 0.613191
cobB-1 DVU0405 cobyrinic acid a,c-diamide synthasechromosome CDS452779 1407 + 0.636816
cobB-2 DVU3086 cobyrinic acid a,c-diamide synthasechromosome CDS3227312 1824 + 0.67489
cobH DVU3087 precorrin-8X methylmutasechromosome CDS3229144 642 + 0.688474
cobI DVU0646 precorrin-2 C20-methyltransferasechromosome CDS717068 771 - 0.660182
cobJ DVU3170 precorrin-3b C17-methyltransferasechromosome CDS3326787 855 + 0.672515
cobL DVU2749 precorrin-6Y C5,15-methyltransferase (decarboxylating)chromosome CDS2856418 1461 - 0.692676
cobM DVU2748 precorrin-4 C11-methyltransferasechromosome CDS2855627 774 - 0.678295
cobO DVU1403 cob(I)alamin adenosyltransferasechromosome CDS1472525 504 - 0.617063
cobQ DVU0816 cobyric acid synthase CobQchromosome CDS904464 1632 + 0.667279
cobS DVU0914 cobalamin-5-phosphate synthasechromosome CDS1007871 738 - 0.646341
cobT DVU3279 nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferasechromosome CDS3454215 1074 + 0.689013
cobU DVU1007 cobinamide kinase/cobinamide phosphate guanylyltransferasechromosome CDS1102911 537 + 0.636872
dxs DVU1350 1-deoxy-D-xylulose-5-phosphate synthasechromosome CDS1427612 1926 + 0.640706
folC DVU2882 folylpolyglutamate synthasechromosome CDS2978219 1497 + 0.667335
folD DVU0323 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolasechromosome CDS366622 861 + 0.679443
folK DVU1656 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinasechromosome CDS1737836 426 + 0.64554
folP DVU1279 dihydropteroate synthasechromosome CDS1371953 861 + 0.628339
hemA DVU1461 glutamyl-tRNA reductasechromosome CDS1540047 1323 - 0.628118
hemB DVU0856 porphobilinogen synthasechromosome CDS945759 993 - 0.619335
hemC DVU1890 porphobilinogen deaminasechromosome CDS1962409 948 + 0.655063
hemL DVU3168 glutamate-1-semialdehyde-2,1-aminomutasechromosome CDS3323906 1272 + 0.671384
ilvB-1 DVU0360 acetolactate synthase, large subunit, biosynthetic typechromosome CDS409391 1692 + 0.667258
ilvB-2 DVU1376 acetolactate synthase, large subunit, biosynthetic typechromosome CDS1451544 1692 + 0.624704
ilvC DVU1378 ketol-acid reductoisomerasechromosome CDS1453855 996 + 0.618474
ilvE DVU3197 branched-chain amino acid aminotransferasechromosome CDS3359552 930 + 0.626882
ispB DVU3179 octaprenyl-diphosphate synthasechromosome CDS3334550 966 + 0.674948
lipA DVU0905 lipoic acid synthetasechromosome CDS997479 897 - 0.649944
lipB DVU0906 lipoate-protein ligase Bchromosome CDS998305 657 - 0.633181
metK DVU2449 S-adenosylmethionine synthetasechromosome CDS2553206 1176 + 0.639456
moaA DVU0580 molybdenum cofactor biosynthesis protein Achromosome CDS643924 1026 + 0.646199
moaC DVU0289 molybdenum cofactor biosynthesis protein Cchromosome CDS333951 486 - 0.652263
moeA DVU2990 molybdopterin biosynthesis MoeA proteinchromosome CDS3096677 1953 + 0.671787
nadA DVU1808 quinolinate synthetase complex, subunit Achromosome CDS1872554 1077 + 0.645311
nadB DVU1809 L-aspartate oxidasechromosome CDS1873643 1587 + 0.640202
nadC DVU1807 nicotinate-nucleotide pyrophosphorylasechromosome CDS1871670 888 + 0.630631
nadD DVU1954 nicotinate (nicotinamide) nucleotide adenylyltransferasechromosome CDS2027512 705 + 0.662411
paaK-1 DVU0489 phenylacetate-coenzyme A ligasechromosome CDS556585 1299 + 0.65281
paaK-2 DVU1615 phenylacetate-coenzyme A ligasechromosome CDS1700751 1308 - 0.626911
paaK-3 DVU2735 phenylacetate-coenzyme A ligasechromosome CDS2836219 1299 + 0.65358
pabA DVU0364 para-aminobenzoate/anthranilate synthase glutamine amidotransferasechromosome CDS413780 555 - 0.672072
pabB DVU0363 para-aminobenzoate synthase, component Ichromosome CDS412237 1005 - 0.679602
panB DVU2446 3-methyl-2-oxobutanoate hydroxymethyltransferasechromosome CDS2550513 924 + 0.650433
panC DVU2448 pantoate--beta-alanine ligasechromosome CDS2552303 852 + 0.638498
pdxA DVU2241 pyridoxal phosphate biosynthetic protein PdxAchromosome CDS2334036 1221 - 0.673219
pdxJ DVU1908 pyridoxal phosphate biosynthetic protein PdxJchromosome CDS1983729 726 + 0.636364
pyrK DVU3315 dihydroorotate dehydrogenase, electron transfer subunitchromosome CDS3493097 819 + 0.666667
ribAB DVU1199 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase IIchromosome CDS1290684 1230 - 0.626829
ribB DVU1775 3,4-dihydroxy-2-butanone 4-phosphate synthasechromosome CDS1839892 645 - 0.621705
ribD DVU1201 riboflavin biosynthesis protein RibDchromosome CDS1292613 1134 - 0.675485
ribE DVU1200 riboflavin synthase, alpha subunitchromosome CDS1291945 663 - 0.630468
ribF DVU0450 riboflavin biosynthesis protein RibFchromosome CDS514816 945 + 0.645503
ribH DVU1198 riboflavin synthase, beta subunitchromosome CDS1290082 471 - 0.645435
thiC DVU1411 thiamine biosynthesis protein ThiCchromosome CDS1480019 1290 + 0.648837
thiD DVU0931 phosphomethylpyrimidine kinasechromosome CDS1020935 807 + 0.634449
thiE-1 DVU2091 thiamine-phosphate pyrophosphorylasechromosome CDS2180539 681 - 0.637298
thiE-2 DVU2362 thiamine-phosphate pyrophosphorylasechromosome CDS2459445 660 - 0.693939
thiG DVU2094 thiG proteinchromosome CDS2183451 798 - 0.682957
thiH DVU2093 thiH proteinchromosome CDS2182114 1335 - 0.653933
thiL DVU0157 thiamin-monophosphate kinasechromosome CDS194396 972 + 0.674897
thiM DVU2363 hydroxyethylthiazole kinasechromosome CDS2460101 804 - 0.68408
thiS DVU2095 thiamine biosynthesis protein ThiSchromosome CDS2184248 201 - 0.597015
trpG DVU0466 anthranilate synthase, glutamine amidotransferase componentchromosome CDS534432 630 + 0.671429
ubiE DVU3174 ubiquinone/menaquinone biosynthesis methlytransferase UbiEchromosome CDS3330876 777 + 0.658945
ubiX DVU3307 3-octaprenyl-4-hydroxybenzoate carboxy-lyasechromosome CDS3484853 564 + 0.670213