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2024-04-29 10:41:58

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Phage Gifsy-1

Number of genes found: 170

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Phage Gifsy-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SC2997 putative monooxygenasechromosome CDS3175308 1203 - 0.573566
NA SC3905 putative periplasmic proteinchromosome CDS4157043 1026 - 0.499025
NA SC3288 putative inner membrane proteinchromosome CDS3472722 732 - 0.543716
NA SC1559 putative monooxygenasechromosome CDS1652136 468 - 0.547009
NA SC0970 hypothetical proteinchromosome CDS1090512 207 + 0.516908
NA SC0767 putative cytoplasmic proteinchromosome CDS862028 648 + 0.604938
NA SC3995 hypothetical proteinchromosome CDS4249367 291 - 0.436426
acpT SC3512 putative Phosphopantetheinyl transferasechromosome CDS3704787 579 + 0.585492
allP SC0561 Putative allantoin permeasechromosome CDS626790 1455 + 0.45567
apbA SC0475 ketopantoate reductasechromosome CDS531194 912 - 0.525219
apbE SC2270 putative thiamine biosynthesis lipoproteinchromosome CDS2378560 1053 - 0.566952
asrB SC2543 anaerobic sulfide reductasechromosome CDS2708097 819 + 0.555556
bioA SC0791 7,8-diaminopelargonic acid synthetasechromosome CDS887422 1392 - 0.567529
bioB SC0792 biotin synthetasechromosome CDS888798 1041 + 0.552354
bioD SC0795 dethiobiotin synthetasechromosome CDS891724 687 + 0.592431
bioF SC0793 7-keto-8-aminopelargonic acid synthetasechromosome CDS889835 1158 + 0.605354
birA SC4026 biotin-[acetylCoA carboxylase] holoenzyme synthetase/biotin operon transcriptional repressor (BirA family)chromosome CDS4291714 963 + 0.49325
btuB SC4019 outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23chromosome CDS4282437 1887 + 0.514043
btuC SC1359 ABC superfamily (membrane), vitamin B12 transport proteinchromosome CDS1455677 981 + 0.591233
btuD SC1361 ABC superfamily (binding protein), vitamin B12 transport proteinchromosome CDS1457300 750 + 0.564
btuR SC1715 cob(I)alamin and cobinamide adenolsyltransferasechromosome CDS1828259 591 + 0.536379
cbiA SC2043 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2134161 1380 - 0.558696
cbiC SC2041 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2132562 633 - 0.554502
cbiD SC2040 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2131423 1140 - 0.554386
cbiE SC2039 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2130824 606 - 0.579208
cbiF SC2037 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2129499 774 - 0.571059
cbiG SC2036 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2128463 1056 - 0.552083
cbiH SC2035 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2127738 726 - 0.564738
cbiJ SC2034 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2126950 792 - 0.593434
cbiK SC2033 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2126153 795 - 0.555975
cbiL SC2032 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2125443 714 - 0.57423
cbiP SC2027 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2121421 1521 - 0.558843
cbiT SC2038 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2130256 579 - 0.561313
cibB SC2042 synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2133205 960 - 0.590625
citG SC0648 putative modifier of citrate lyase proteinchromosome CDS724957 897 - 0.603122
citG2 SC0057 putative modifier of citrate lyase proteinchromosome CDS67185 909 + 0.545655
citX SC0649 putative cytoplasmic proteinchromosome CDS725825 552 - 0.61413
citX2 SC0056 putative cytoplasmic proteinchromosome CDS66707 501 + 0.55489
coaA SC4027 pantothenate kinasechromosome CDS4292711 957 - 0.454545
cobS SC2025 cobalamin 5'-phosphate synthasechromosome CDS2120139 744 - 0.56586
cobT SC2024 nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferasechromosome CDS2119042 1101 - 0.587648
cobU SC2026 cobinamide kinase/cobinamide phosphate guanylyltransferasechromosome CDS2120879 546 - 0.551282
cysD SC2867 ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase)chromosome CDS3029313 909 - 0.530253
cysG SC3411 siroheme synthase, catalyses four separate reactions that are required for the transformation of uroporphyrinogen III into sirohemechromosome CDS3581824 1374 + 0.57933
cysH SC2877 3'-phosphoadenosine 5'-phosphosulfate (PAPS) reductasechromosome CDS3041837 735 - 0.556463
dciP SC2408 putative thiamine pyrophosphate enzymeschromosome CDS2536115 1653 - 0.594676
dfp SC3653 flavoprotein affecting synthesis of DNA and pantothenate metabolismchromosome CDS3865818 1224 + 0.553105
dxs SC0463 1-deoxyxylulose-5-phosphate synthase; flavoproteinchromosome CDS519044 1863 - 0.553409
entC SC0626 isochorismate synthetase, enterochelin biosynthesischromosome CDS698878 1107 + 0.585366
fepC SC0621 ABC s+uperfamily (atp_bind), enterobactin transporterchromosome CDS693339 795 - 0.566038
fhuC SC0192 ABC superfamily (atp_bind), hydroxymate-dependent iron transportchromosome CDS222053 828 + 0.589372
fhuC SC0769 putative ABC-type cobalamin/Fe3+-siderophores transport system, ATPase componentchromosome CDS864134 777 + 0.56242
fimY SC0589 putative regulatory proteinchromosome CDS657182 723 - 0.467497
folA SC0082 dihydrofolate reductase type I; trimethoprim resistancechromosome CDS95057 480 + 0.5375
folB SC3153 dihydroneopterin aldolase, also has dihydroneopterin triphosphate 2'-epimerase activitychromosome CDS3333561 363 - 0.504132
folC SC2367 multifunctional folylpolyglutamate synthase; dihydrofolate synthase, also has formylTHF polyglutamate synthase activitychromosome CDS2491764 1269 - 0.582348
folD SC0581 5,10-methylene-tetrahydrofolatedehydrogenase/5,1 0-methylene-tetrahydrofolatecyclohydrolasechromosome CDS647051 867 - 0.54902
folE SC2209 GTP cyclohydrolase Ichromosome CDS2312957 669 - 0.521674
folK SC0183 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, PPPKchromosome CDS209504 480 - 0.575
fre SC3877 FMN reductasechromosome CDS4119394 702 + 0.524217
gshA SC2753 gamma-glutamate-cysteine ligasechromosome CDS2921619 1557 - 0.5228
gshB SC3035 glutathione synthetasechromosome CDS3216430 948 + 0.543249
hemA SC1771 glutamyl tRNA reductasechromosome CDS1887434 1257 - 0.566428
hemB SC0413 5-aminolevulinate dehydratase ( porphobilinogen synthase)chromosome CDS468222 975 - 0.553846
hemC SC3839 porphobilinogen deaminase (hydroxymethylbilane synthase)chromosome CDS4080845 963 - 0.583593
hemD SC3838 uroporphyrinogen III synthasechromosome CDS4080108 741 - 0.576248
hemE SC4048 uroporphyrinogen decarboxylasechromosome CDS4317720 1065 + 0.573709
hemF SC2450 coproporphyrinogen III oxidasechromosome CDS2576966 900 + 0.572222
hemG SC3883 protoporphyrin oxidasechromosome CDS4129368 546 + 0.507326
hemH SC0531 ferrochelatasechromosome CDS591272 963 + 0.568017
hemL SC0202 glutamate-1-semialdehyde aminotransferase (aminomutase)chromosome CDS233324 1281 - 0.587822
hemN SC3903 putative coproporphyrinogen III oxidase and related FeS oxidoreductaseschromosome CDS4154932 1242 - 0.480676
hemN SC3896 O2-independent coproporphyrinogen III oxidasechromosome CDS4145247 1374 + 0.517467
hemX SC3837 uroporphyrinogen III methylasechromosome CDS4078917 1170 - 0.55812
hemY SC3836 HemYchromosome CDS4077718 1200 - 0.578333
ilvB SC3716 acetolactate synthase I, large subunit, valine sensitivechromosome CDS3935572 1689 - 0.560687
ilvC SC3814 ketol-acid reductoisomerasechromosome CDS4052506 1476 + 0.565041
ilvE SC3808 branched-chain amino-acid aminotransferasechromosome CDS4046027 930 + 0.547312
ilvI SC0113 acetolactate synthase III, valine sensitive, large subunitchromosome CDS130191 1701 + 0.545561
ispA SC0464 geranyltranstransferase (farnesyldiphosphate synthase)chromosome CDS520930 900 - 0.574444
ispB SC3243 octaprenyl diphosphate synthasechromosome CDS3427913 1146 + 0.519197
kbl SC3632 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase)chromosome CDS3846218 1197 - 0.559733
kdtB SC3648 phosphopantetheine adenylyltransferasechromosome CDS3862925 480 + 0.529167
ldhA SC1642 fermentative D-lactate dehydrogenase, NAD-dependentchromosome CDS1753212 990 + 0.514141
lipA SC0662 lipoate synthase, an iron-sulfur enzymechromosome CDS737409 966 - 0.548654
lipB SC0664 putative ligase in lipoate biosynthesischromosome CDS739835 576 - 0.496528
lplA SC4420 lipoate-protein ligase Achromosome CDS4729681 1017 - 0.566372
menA SC3979 1,4-dihydroxy-2-naphthoate octaprenyltransferasechromosome CDS4231193 930 - 0.554839
menB SC2307 dihydroxynaphtoic acid synthetasechromosome CDS2428278 858 - 0.566434
menC SC2306 o-succinylbenzoyl-CoA synthasechromosome CDS2427316 963 - 0.600208
menD SC2309 2-oxoglutarate decarboxylase/SHCHC synthasechromosome CDS2429905 1671 - 0.59605
menF SC2310 isochorismate synthase (isochorismate hydroxymutase 2), menaquinone biosynthesischromosome CDS2431661 1296 - 0.568673
menG SC3978 putative methyltransferase in menaquinone biosynthesis proteinchromosome CDS4230615 486 - 0.545267
metK SC3030 methionine adenosyltransferase 1 (AdoMet synthetase)chromosome CDS3211182 1155 + 0.542857
moaA SC0800 molybdopterin biosynthesis, protein Achromosome CDS899203 1023 + 0.535679
moaB SC0801 molybdopterin biosynthesis, protein Bchromosome CDS900247 513 + 0.555556
moaC SC0802 molybdopterin biosynthesis, protein Cchromosome CDS900762 486 + 0.555556
moaD SC0803 molybdopterin biosynthesis proteinchromosome CDS901240 246 + 0.585366
moaE SC0804 molybdopterin converting factor, subunit 2chromosome CDS901487 453 + 0.607064
mobA SC3887 putative molybdopterin-guanine dinucleotide biosynthesis proteinchromosome CDS4136274 585 - 0.562393
mobB SC3886 molybdopterin-guanine dinucleotide biosynthesis protein B, GTP-bindingchromosome CDS4135762 531 - 0.495292
moeA SC0841 molybdopterin biosynthesis proteinchromosome CDS942123 1236 - 0.579288
moeB SC0840 molybdopterin biosynthesischromosome CDS941374 750 - 0.568
mog SC0008 putative molybdochetalase in molybdopterine biosynthesischromosome CDS8729 591 + 0.56176
nadA SC0755 quinolinate synthetase, A proteinchromosome CDS848878 1044 + 0.555556
nadB SC2646 quinolinate synthetase, B proteinchromosome CDS2797652 1623 + 0.556377
nadC SC0144 quinolinate phosphoribosyltransferasechromosome CDS164431 936 - 0.566239
nadD SC0675 putative Nicotinic acid mononucleotide adenylyltransferasechromosome CDS749393 642 - 0.545171
nadE SC1331 NAD synthetase, prefers NH3 over glutaminechromosome CDS1428782 828 - 0.530193
nadR SC4425 three acitivities: regulator of nadAB transcription, regulator of PnuC activity, also contains NMN adenylyltransferase activitychromosome CDS4734077 1233 + 0.510949
nhg SC2192 putative monooxygenasechromosome CDS2294285 1194 - 0.586265
nin SC0342 Nin-like proteinchromosome CDS388012 873 + 0.462772
pabA SC3403 p-aminobenzoate synthetase, component IIchromosome CDS3574198 564 - 0.547872
pabB SC1818 p-aminobenzoate synthetase, component Ichromosome CDS1936342 1365 + 0.554579
pabC SC1148 4-amino-4-deoxychorismate lyasechromosome CDS1263173 810 + 0.516049
pad SC2851 putative flavoproteinchromosome CDS3016801 594 + 0.577441
panB SC0182 3-methyl-2-oxobutanoate hydroxymethyltransferasechromosome CDS208592 792 - 0.565657
panC SC0181 pantothenate synthetasechromosome CDS207612 855 - 0.549708
panD SC0180 aspartate 1-decarboxylasechromosome CDS207137 381 - 0.532808
panE SC2568 putative ketopantoate reductasechromosome CDS2738937 918 - 0.491285
panF SC3320 SSS family, sodium/pantothenate symporterchromosome CDS3507000 1452 + 0.550276
pdxA SC0163 pyridoxine phosphate biosynthetic proteinchromosome CDS188521 984 + 0.554878
pdxA SC0086 NAD-dependent dehydrogenase/carboxylase; pyridoxine phosphate biosynthetic protein PdxJ-PdxA subunitchromosome CDS97699 990 - 0.584848
pdxB SC2372 erythronate-4-phosphate dehyrogenasechromosome CDS2496765 1251 - 0.553957
pdxH SC1466 pyridoxine 5'-phosphate oxidasechromosome CDS1560389 657 + 0.550989
pdxJ SC2573 carries out condensation and ring closure step after PdxA in pyridoxine biosynthesischromosome CDS2742904 732 - 0.579235
pdxK SC2433 pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinasechromosome CDS2563305 867 - 0.568627
pdxY SC1468 pyridoxal kinase 2/pyridoxine kinasechromosome CDS1562506 861 + 0.547038
pncB SC0962 nicotinate phosphoribosyltransferasechromosome CDS1082109 1251 - 0.541167
pnuC SC0756 NMN family, nucleoside/purine/pyrimidine transporterchromosome CDS849946 720 + 0.5
poxB SC0890 pyruvate dehydrogenase/oxidase FAD and thiamine PPi cofactors, cytoplasmic in absence of cofactorschromosome CDS995129 1719 - 0.571262
ptpS SC2880 putative synthasechromosome CDS3046581 363 + 0.528926
ribA SC1706 GTP cyclohydrolase IIchromosome CDS1817240 591 + 0.505922
ribB SC3141 3,4 dihydroxy-2-butanone-4-phosphate synthasechromosome CDS3319929 654 - 0.556575
ribD SC0457 pyrimidine deaminase/reductasechromosome CDS514255 1104 + 0.601449
ribE SC1445 riboflavin synthase, alpha chainchromosome CDS1541240 642 + 0.510903
ribF SC0039 flavokinase and FAD synthetasechromosome CDS47126 939 + 0.569755
ribH SC0458 riboflavin synthase, beta chainchromosome CDS515447 471 + 0.543524
rimK SC0868 ribosomal protein S6 modification proteinchromosome CDS974308 903 + 0.563677
serA SC3003 D-3-phosphoglycerate dehydrogenasechromosome CDS3181449 1233 - 0.553122
serC SC0931 3-phosphoserine aminotransferase / phosphohydroxythreonine transaminasechromosome CDS1045428 1089 + 0.532599
tbpA SC0102 thiamine-binding periplasmic proteinchromosome CDS119700 984 - 0.550813
thiC SC4045 5'-phosphoryl-5-aminoimidazole4-amino-5-hydroxym ethyl-2-methylpyrimidine-Pchromosome CDS4314066 1896 - 0.583861
thiD SC2161 hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase)/hydroxy-methylpyrimidine kinase (HMP kinase)chromosome CDS2262779 801 - 0.598002
thiE SC4044 thiamin phosphate synthase (thiamine phosphate pyrophosphorylase)chromosome CDS4313431 636 - 0.600629
thiF SC4043 catalyzes the adenylation of thisS as part of thiazole synthesis, also with ThiI it catalyses the transfer of sulfur from cysteine to the ThiS enzymechromosome CDS4312680 759 - 0.587615
thiG SC4042 Thiazole biosynthesis protein thiGchromosome CDS4311727 1029 - 0.621963
thiH SC4041 deoxyxylulose-5-P + thi-S-COSH + tyrosine 4-methyl-5-(beta-hydroxyethyl)thiazole-P + 4-hydroxy-benzyl-alcohol + C1 of tyrosinechromosome CDS4310597 1134 - 0.579365
thiL SC0460 Thiamine-monophosphate kinasechromosome CDS516436 981 + 0.56473
thiM SC2162 hydoxyethylthiazole kinase (THZ kinase)chromosome CDS2263566 798 - 0.612782
trpD SC1720 anthranilate synthase, component IIchromosome CDS1833244 1596 + 0.572682
trpE SC1719 anthranilate synthase, component Ichromosome CDS1831682 1563 + 0.580934
ubiA SC4113 p-hydroxybenzoate: octaprenyltransferasechromosome CDS4389826 873 + 0.549828
ubiC SC4112 chorismate pyruvate lyasechromosome CDS4389315 498 + 0.540161
ubiE SC3868 S-adenosylmethionine : 2-DMK methyltransferase and 2-octaprenyl-6-methoxy-1,4-benzoquinone methylasechromosome CDS4111523 756 + 0.484127
ubiF SC0699 putative monooxygenasechromosome CDS778589 1176 + 0.60119
ubiG SC2279 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylasechromosome CDS2394547 780 + 0.542308
ubiH SC2998 2-octaprenyl-6-methoxyphynol hydroxylasechromosome CDS3176633 1179 - 0.608991
ubiX SC2358 3-octaprenyl-4-hydroxybenzoate carboxy-lyasechromosome CDS2480992 570 - 0.550877
vdcC SC2852 putative 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylasechromosome CDS3017394 1428 + 0.552521
yabJ SC0100 putative ABC-transport proteinchromosome CDS117423 708 - 0.574859
yacE SC0139 putative nucleotide kinasechromosome CDS159265 621 - 0.542673
ycdW SC1083 paral putative oxidoreductasechromosome CDS1205151 939 + 0.549521
ygdL SC2927 paral putative enzymechromosome CDS3098536 807 - 0.562577
ygfA SC3002 putative ligasechromosome CDS3180471 597 + 0.569514
yggW SC3044 putative oxidasechromosome CDS3222566 1176 + 0.547619
yiaE SC3578 2-keto-D-gluconate reductasechromosome CDS3784468 975 + 0.56718
yieE SC3762 putative cytoplasmic proteinchromosome CDS3990997 756 + 0.527778
yigC SC3876 putative oxidoreductasechromosome CDS4117830 1479 + 0.538202
ynfK SC1507 putative dethiobiotin synthasechromosome CDS1604605 696 + 0.521552