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2024-05-07 19:56:21

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Pseudomonas syringae pv. tomato str. DC3000, DC3000

Number of genes found: 161

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Pseudomonas syringae pv. tomato str. DC3000, DC3000
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSPTO1871 cytosine/purine/uracil/thiamine/allantoin permease family proteinchromosome CDS2045768 1452 - 0.615014
NA PSPTO4397 mutT/nudix family proteinchromosome CDS4961699 951 - 0.630915
NA PSPTO0258 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS280829 966 - 0.611801
NA PSPTO5313 molybdenum-pterin binding domain proteinchromosome CDS6042702 216 - 0.541667
NA PSPTO0131 hemY protein, putativechromosome CDS155443 1245 + 0.640964
NA PSPTO5475 chorismate-pyruvate lyase, putativechromosome CDS6235375 561 + 0.618538
NA PSPTO5240 oxidoreductase, iron-sulfur-bindingchromosome CDS5959090 969 - 0.625387
NA PSPTO3258 iron ABC transporter, ATP-binding proteinchromosome CDS3682282 792 + 0.650253
NA PSPTO5227 5-formyltetrahydrofolate cyclo-ligase family proteinchromosome CDS5949328 612 + 0.627451
NA PSPTO4880 precorrin-6x reductase, putativechromosome CDS5527735 741 + 0.620783
NA PSPTO0417 pantetheine-phosphate adenylyltransferasechromosome CDS462809 480 - 0.5875
NA PSPTO3149 cobN/magnesium chelatase family proteinchromosome CDS3537365 3765 - 0.637981
NA PSPTO5052 oxygen-independent coproporphyrinogen III oxidase, putativechromosome CDS5750738 1215 + 0.601646
NA PSPTO2429 capK domain proteinchromosome CDS2681681 1431 + 0.464011
NA PSPTO2645 FAD-binding monooxygenase, PheA/TfdB familychromosome CDS2938265 1590 - 0.618239
NA PSPTO3148 magnesium chelatase, subunit ChII, putativechromosome CDS3536337 1029 - 0.634597
NA PSPTO0760 iron(III) dicitrate transport system, ATP-binding protein FecEchromosome CDS808253 792 - 0.646465
NA PSPTO3287 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS3715029 957 + 0.611285
NA PSPTO3147 conserved hypothetical proteinchromosome CDS3535672 612 - 0.625817
NA PSPTO0595 conserved hypothetical proteinchromosome CDS653921 696 + 0.625
NA PSPTO2294 dimethylmenaquinone methyltransferase family proteinchromosome CDS2539402 489 + 0.586912
NA PSPTO2105 thiamine biosynthesis lipoprotein, putativechromosome CDS2280026 1032 + 0.596899
NA PSPTO0774 beta-alanine--pyruvate aminotransferasechromosome CDS824016 1347 + 0.575353
NA PSPTO3142 nicotinamide mononucleotide transporter PnuC, putativechromosome CDS3530526 564 + 0.592199
NA PSPTO0201 conserved domain proteinchromosome CDS224484 900 - 0.402222
NA PSPTO3204 conserved hypothetical proteinchromosome CDS3597525 714 - 0.577031
NA PSPTO0599 conserved hypothetical proteinchromosome CDS657002 648 - 0.618827
NA PSPTO1525 ThiF family proteinchromosome CDS1682938 831 + 0.617329
NA PSPTO0130 uroporphyrin-III C-methyltransferase, putativechromosome CDS154316 1131 + 0.6313
NA PSPTO0835 ribD C-terminal domain proteinchromosome CDS906604 675 + 0.478519
NA PSPTO4338 oxidoreductase, iron-sulfur-bindingchromosome CDS4888692 939 - 0.636848
NA PSPTO5308 aminotransferase, class IIIchromosome CDS6035392 1368 - 0.589181
NA PSPTO1738 conserved hypothetical proteinchromosome CDS1906438 786 + 0.589059
NA PSPTO3460 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS3902047 933 - 0.620579
NA PSPTO1215 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS1330200 975 - 0.609231
NA PSPTO0043 cytidine/deoxycytidylate deaminase family proteinchromosome CDS58344 1563 + 0.513756
NA PSPTO3143 nicotinamide-nucleotide adenylyltransferase, putativechromosome CDS3531086 537 + 0.616387
NA PSPTO2424 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS2674609 960 - 0.622917
NA PSPTO2709 tetrapyrrole methylase family proteinchromosome CDS3005404 786 + 0.610687
NA PSPTO0299 monooxygenasechromosome CDS324439 1056 + 0.624053
NA PSPTO4798 phosphomethylpyrimidine kinase, putativechromosome CDS5438617 798 + 0.621554
NA PSPTO5025 hypothetical proteinchromosome CDS5723444 372 - 0.435484
NA PSPTO3430 6-pyruvoyl tetrahydrobiopterin synthase, putativechromosome CDS3865354 357 + 0.507003
NA PSPTO4874 CbiG protein/precorrin-3B C17-methyltransferasechromosome CDS5520896 1704 - 0.630869
NA PSPTO5561 iron-compound ABC transporter, ATP-binding protein, putativechromosome CDS6336954 780 + 0.629487
NA PSPTO0730 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putativechromosome CDS780274 630 + 0.619048
NA PSPTO2079 hypothetical proteinchromosome CDS2253384 363 + 0.575758
NA PSPTO2434 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS2686542 942 + 0.480892
NA PSPTO3920 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS4433652 933 - 0.604502
NA PSPTO1709 cobyrinic acid a,c-diamide synthase family proteinchromosome CDS1879092 1296 + 0.656636
ahcY PSPTO5068 adenosylhomocysteinasechromosome CDS5771439 1410 + 0.587943
bioA PSPTO5075 adenosylmethionine--8-amino-7-oxononanoateaminot ransferasechromosome CDS5779943 1407 + 0.610519
bioB PSPTO0494 biotin synthetasechromosome CDS541032 1059 + 0.607177
bioD PSPTO0498 dethiobiotin synthetasechromosome CDS544902 681 + 0.61674
bioF PSPTO0495 8-amino-7-oxononanoate synthasechromosome CDS542154 1191 + 0.633921
birA PSPTO0610 birA bifunctional proteinchromosome CDS672113 960 + 0.560417
cbiD PSPTO4879 cobalamin biosynthesis protein CbiDchromosome CDS5526626 1113 + 0.654088
coaBC PSPTO0085 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligasechromosome CDS106837 1248 - 0.61859
coaE PSPTO0923 dephospho-CoA kinasechromosome CDS1002573 624 - 0.602564
cobA PSPTO2300 uroporphyrin-III C-methyltransferasechromosome CDS2543960 762 - 0.632546
cobD PSPTO1711 cobalamin biosynthesis protein CobDchromosome CDS1881031 909 + 0.650165
cobH PSPTO4876 precorrin-8X methylmutasechromosome CDS5523330 627 - 0.636364
cobI PSPTO4875 precorrin-2 C20-methyltransferasechromosome CDS5522599 732 - 0.607924
cobL PSPTO4878 precorrin-6Y C5,15-methyltransferase (decarboxylating)chromosome CDS5525424 1203 + 0.66251
cobM PSPTO3154 precorrin-4 C11-methyltransferasechromosome CDS3544307 750 + 0.597333
cobO PSPTO1708 cob(I)alamin adenosyltransferasechromosome CDS1878441 612 + 0.616013
cobP PSPTO1714 cobinamide kinase/cobinamide phosphate guanylyltransferasechromosome CDS1884394 522 + 0.624521
cobQ PSPTO1713 cobyric acid synthasechromosome CDS1882933 1461 + 0.643395
cobS PSPTO1717 cobalamin (5'-phosphate) synthasechromosome CDS1886539 732 + 0.643443
cobT PSPTO1715 nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferasechromosome CDS1884912 1053 + 0.655271
cysD PSPTO4433 sulfate adenylate transferase, subunit 2chromosome CDS5001041 918 - 0.577342
cysG PSPTO3344 siroheme synthasechromosome CDS3779406 1395 - 0.620072
cysH PSPTO2280 phosphoadenosine phosphosulfate reductasechromosome CDS2521178 735 - 0.595918
dxs PSPTO0698 deoxyxylulose-5-phosphate synthasechromosome CDS750560 1896 - 0.616561
folA PSPTO0437 dihydrofolate reductasechromosome CDS481216 513 - 0.610136
folB-1 PSPTO0542 dihydroneopterin aldolasechromosome CDS595327 354 + 0.60452
folB-2 PSPTO1181 dihydroneopterin aldolasechromosome CDS1294869 372 - 0.572581
folC PSPTO3814 folylpolyglutamate synthase/dihydrofolate synthasechromosome CDS4321780 1305 - 0.618391
folD-1 PSPTO2453 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolasechromosome CDS2710040 903 - 0.614618
folD-2 PSPTO3733 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolasechromosome CDS4216904 855 + 0.637427
folE-1 PSPTO1182 GTP cyclohydrolase Ichromosome CDS1295240 564 - 0.547872
folE-2 PSPTO2035 GTP cyclohydrolase Ichromosome CDS2220137 546 - 0.569597
folK-1 PSPTO0543 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinasechromosome CDS595671 525 + 0.590476
folK-2 PSPTO0962 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinasechromosome CDS1044547 507 - 0.627219
folP PSPTO4496 dihydropteroate synthasechromosome CDS5064162 852 - 0.607981
gshA PSPTO0325 glutamate--cysteine ligasechromosome CDS354040 1590 - 0.595598
gshB PSPTO5035 glutathione synthetasechromosome CDS5736905 960 + 0.622917
hemA PSPTO1108 glutamyl-tRNA reductasechromosome CDS1223036 1278 + 0.613459
hemB PSPTO5251 delta-aminolevulinic acid dehydratasechromosome CDS5971498 1011 - 0.602374
hemC PSPTO0128 porphobilinogen deaminasechromosome CDS152560 942 + 0.633758
hemD PSPTO0129 uroporphyrinogen-III synthetasechromosome CDS153498 777 + 0.608752
hemE PSPTO5118 uroporphyrinogen decarboxylasechromosome CDS5819471 1065 - 0.61784
hemF PSPTO0170 coproporphyrinogen III oxidase, aerobicchromosome CDS190442 915 - 0.618579
hemH PSPTO1128 ferrochelatasechromosome CDS1240127 1023 + 0.584555
hemL PSPTO4800 glutamate-1-semialdehyde-2,1-aminomutasechromosome CDS5440261 1284 + 0.615265
hemN PSPTO1993 oxygen-independent coproporphyrinogen III oxidasechromosome CDS2177061 1383 - 0.605206
iaaL PSPTO0371 indoleacetate-lysine ligasechromosome CDS406323 1188 + 0.532828
ilvB PSPTO0981 acetolactate synthase, large subunit, biosynthetic typechromosome CDS1065591 1725 + 0.583768
ilvC PSPTO0983 ketol-acid reductoisomerasechromosome CDS1067857 1017 + 0.566372
ilvE PSPTO1332 branched-chain amino acid aminotransferasechromosome CDS1462008 1020 + 0.587255
ispA PSPTO0699 geranyltranstransferasechromosome CDS752619 888 - 0.644144
ispB PSPTO0796 octylprenyl diphosphate synthasechromosome CDS862083 969 - 0.619195
lipA PSPTO4818 lipoic acid synthetasechromosome CDS5456472 957 - 0.619645
lipB PSPTO4819 lipoate-protein ligase Bchromosome CDS5457472 657 - 0.604262
mdcB PSPTO5086 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthasechromosome CDS5788748 876 - 0.6621
metK PSPTO0383 S-adenosylmethionine synthetasechromosome CDS423533 1191 - 0.607893
moaA PSPTO2516 molybdenum cofactor biosynthesis protein Achromosome CDS2778665 999 - 0.613614
moaB PSPTO2352 molybdenum cofactor biosynthesis protein Bchromosome CDS2606827 540 + 0.637037
moaC PSPTO1247 molybdenum cofactor biosynthesis protein Cchromosome CDS1372312 486 + 0.584362
moaD PSPTO1248 molybdenum cofactor biosynthesis protein Dchromosome CDS1372794 246 + 0.565041
moaE PSPTO1249 molybdenum cofactor biosynthesis protein Echromosome CDS1373042 447 + 0.612975
mobA PSPTO2351 molybdopterin-guanine dinucleotide biosynthesis protein Achromosome CDS2606146 606 - 0.625413
moeA PSPTO2353 molybdopterin biosynthesis protein MoeAchromosome CDS2607373 1212 + 0.646865
moeB PSPTO1111 molybdopterin biosynthesis protein MoeBchromosome CDS1226211 780 + 0.616667
nadA PSPTO3959 quinolinate synthetase complex, subunit Achromosome CDS4466782 1059 - 0.600567
nadB PSPTO4225 L-aspartate oxidasechromosome CDS4758704 1617 + 0.608534
nadC PSPTO0948 nicotinate-nucleotide pyrophosphorylasechromosome CDS1025270 849 - 0.616019
nadD PSPTO4828 nicotinate (nicotinamide) nucleotide adenylyltransferasechromosome CDS5465933 669 - 0.629297
nadE PSPTO4922 NH(3)-dependent NAD(+) synthetasechromosome CDS5571612 828 + 0.631643
pabB PSPTO2282 para-aminobenzoate synthase, component Ichromosome CDS2522822 1344 - 0.638393
pabC PSPTO3829 4-amino-4-deoxychorismate lyasechromosome CDS4337017 816 - 0.625
panB PSPTO0961 3-methyl-2-oxobutanoate hydroxymethyltransferasechromosome CDS1043518 801 - 0.620474
panC PSPTO0960 pantoate--beta-alanine ligasechromosome CDS1042670 852 - 0.622066
panE-1 PSPTO2276 2-dehydropantoate 2-reductasechromosome CDS2517416 972 + 0.621399
panE-2 PSPTO4394 2-dehydropantoate 2-reductasechromosome CDS4957962 921 + 0.634093
pchA PSPTO2595 isochorismate synthasechromosome CDS2868541 1410 - 0.631915
pdxA PSPTO0552 pyridoxal phosphate biosynthetic protein PdxAchromosome CDS605468 990 - 0.639394
pdxB PSPTO2019 erythronate-4-phosphate dehydrogenasechromosome CDS2207368 1143 + 0.64042
pdxH PSPTO4116 pyridoxamine 5'-phosphate oxidasechromosome CDS4640275 648 - 0.592593
pdxJ PSPTO4214 pyridoxal phosphate biosynthetic protein PdxJchromosome CDS4747856 741 - 0.626181
pdxY PSPTO5521 pyridoxal kinasechromosome CDS6288458 867 - 0.618224
phhB PSPTO1821 pterin-4-alpha-carbinolamine dehydratasechromosome CDS1988647 357 - 0.571429
pncB PSPTO4921 nicotinate phosphoribosyltransferasechromosome CDS5570362 1224 + 0.578431
pobA PSPTO1907 p-hydroxybenzoate hydroxylasechromosome CDS2085974 1185 - 0.612658
poxB PSPTO2510 pyruvate dehydrogenasechromosome CDS2772382 1719 + 0.616638
pqqC PSPTO0511 coenzyme PQQ synthesis protein Cchromosome CDS559123 756 - 0.603175
ribA PSPTO0696 GTP cyclohydrolase IIchromosome CDS749113 666 + 0.600601
ribBA-1 PSPTO0692 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase IIchromosome CDS745854 1092 + 0.608974
ribBA-2 PSPTO2668 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase IIchromosome CDS2964810 1110 - 0.628829
ribD PSPTO0690 riboflavin biosynthesis protein RibDchromosome CDS743981 1146 + 0.65445
ribE PSPTO0691 riboflavin synthase, alpha subunitchromosome CDS745174 663 + 0.612368
ribF PSPTO0805 riboflavin biosynthesis protein RibFchromosome CDS869460 927 + 0.620281
ribH-1 PSPTO0693 6,7-dimethyl-8-ribityllumazine synthasechromosome CDS747074 477 + 0.599581
ribH-2 PSPTO1839 6,7-dimethyl-8-ribityllumazine synthasechromosome CDS2008266 513 - 0.563353
rimK PSPTO0234 ribosomal protein S6 modification proteinchromosome CDS255243 906 - 0.601545
serA PSPTO5294 D-3-phosphoglycerate dehydrogenasechromosome CDS6020179 1230 + 0.589431
serC PSPTO1746 phosphoserine aminotransferasechromosome CDS1916456 1086 + 0.593923
thiC PSPTO4976 thiamin biosynthesis protein ThiCchromosome CDS5646584 1890 - 0.600529
thiE PSPTO4799 thiamine-phosphate pyrophosphorylasechromosome CDS5439438 618 + 0.631068
thiG PSPTO0434 thiazole biosynthesis protein ThiGchromosome CDS478385 795 + 0.61761
thiL PSPTO0695 thiamine monophosphate kinasechromosome CDS748061 966 + 0.640787
thiS PSPTO0433 thiamine biosynthesis protein ThiSchromosome CDS478133 201 + 0.616915
traY-2 PSPTOA0064 traY proteinpDC3000A CDS63781 2145 + 0.566434
trpE PSPTO0568 anthranilate synthase, component Ichromosome CDS623639 1482 + 0.599865
trpG PSPTO0592 anthranilate synthase, component IIchromosome CDS651383 600 + 0.588333
ubiA PSPTO5476 4-hydroxybenzoate polyprenyl transferasechromosome CDS6235935 891 + 0.597082
ubiD PSPTO5241 3-octaprenyl-4-hydroxybenzoate carboxy-lyasechromosome CDS5960058 1467 - 0.603272
ubiE PSPTO5150 ubiquinone/menaquinone biosynthesis methlytransferase UbiEchromosome CDS5861000 771 + 0.588846
ubiF PSPTO5221 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinolh ydroxylasechromosome CDS5943909 1230 - 0.649593
ubiG PSPTO1742 3-demethylubiquinone-9 3-methyltransferasechromosome CDS1909870 720 - 0.609722
ubiH PSPTO5222 2-octaprenyl-6-methoxyphenyl hydroxylasechromosome CDS5945190 1188 - 0.649832