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2024-05-19 00:49:14

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Porphyromonas gingivalis W83, W83

Number of genes found: 89

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Porphyromonas gingivalis W83, W83
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PG1870 methlytransferase, UbiE/COQ5 familySubName: Full=Methlytransferase, UbiE/COQ5 family; chromosome CDS1965958 660 - 0.528788
NA PG1279 D-isomer specific 2-hydroxyacid dehydrogenase family proteinSubName: Full=D-isomer specific 2-hydroxyacid dehydrogenase family protein; chromosome CDS1356675 921 + 0.466884
NA PG1998 polyprenyl synthetaseSubName: Full=Polyprenyl synthetase; chromosome CDS2087241 879 - 0.496018
NA PG0475 oxygen-independent coproporphyrinogen III oxidase, putativeSubName: Full=Oxygen-independent coproporphyrinogen III oxidase, putative; chromosome CDS516178 1131 - 0.525199
NA PG0111 capsular polysacharride biosynthesis gene, putativeSubName: Full=Capsular polysacharride biosynthesis gene, putative; chromosome CDS133820 1269 + 0.377463
NA PG0202 uroporphyrinogen-III synthase HemD, putativeSubName: Full=Uroporphyrinogen-III synthase HemD, putative; chromosome CDS238857 747 - 0.472557
NA PG0509 prenyltransferase, UbiA familySubName: Full=Prenyltransferase, UbiA family; chromosome CDS548818 861 - 0.483159
NA PG0210 precorrin-6x reductase/cobalamin biosynthetic protein CbiDSubName: Full=Precorrin-6x reductase/cobalamin biosynthetic protein CbiD; chromosome CDS244251 1809 - 0.547264
NA PG0702 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, putativeRecName: Full=Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Short=NN:DBI PRT; EC=2.4.2.21; AltName: Full=N(1)-alpha-phosphoribosyltransferase; chromosome CDS757240 1038 + 0.513487
NA PG0784 polyprenyl synthetaseSubName: Full=Polyprenyl synthetase; chromosome CDS835842 978 - 0.478528
NA PG2171 D-isomer specific 2-hydroxyacid dehydrogenase family proteinSubName: Full=D-isomer specific 2-hydroxyacid dehydrogenase family protein; chromosome CDS2278103 960 - 0.508333
NA PG2159 protoporphyrinogen oxidaseSubName: Full=Protoporphyrinogen oxidase; chromosome CDS2264537 1398 + 0.566524
NA PG1693 HesA/MoeB/ThiF family proteinSubName: Full=HesA/MoeB/ThiF family protein; chromosome CDS1777260 750 - 0.549333
NA PG0703 cobalamin (5'-phosphate) synthase, putativeRecName: Full=Cobalamin synthase; EC=2.-.-.-; chromosome CDS758284 783 + 0.496807
NA PG0480 precorrin-2 C20-methyltransferase, putativeSubName: Full=Precorrin-2 C20-methyltransferase, putative; chromosome CDS520696 714 - 0.481793
NA PG1064 dihydroorotate dehydrogenase, putativeSubName: Full=Dihydroorotate dehydrogenase, putative; chromosome CDS1131688 798 + 0.483709
NA PG1166 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1248390 144 - 0.423611
NA PG0672 iron compound ABC transporter, ATP-binding proteinSubName: Full=Iron compound ABC transporter, ATP-binding protein; chromosome CDS723142 759 + 0.533597
NA PG1056 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1123120 420 + 0.514286
NA PG1898 transporter, putativeSubName: Full=Transporter, putative; chromosome CDS1996817 609 - 0.525452
NA PG1897 thiamin pyrophosphokinase catalytic domain proteinSubName: Full=Thiamin pyrophosphokinase catalytic domain protein; chromosome CDS1996143 678 - 0.514749
NA PG0213 precorrin-3 methylase/precorrin-8X methylmutaseSubName: Full=Precorrin-3 methylase/precorrin-8X methylmutase; chromosome CDS249148 1407 - 0.565743
NA PG1553 CobN/magnesium chelatase family proteinSubName: Full=CobN/magnesium chelatase family protein; chromosome CDS1630998 4410 + 0.514739
NA PG0483 kinase, putativeRecName: Full=Dephospho-CoA kinase; EC=2.7.1.24; AltName: Full=Dephosphocoenzyme A kinase; chromosome CDS523326 609 - 0.545156
NA PG1601 biotin--acetyl-CoA-carboxylase ligaseSubName: Full=Biotin--acetyl-CoA-carboxylase ligase; chromosome CDS1681109 774 - 0.509044
NA PG1220 erythronate-4-phosphate dehydrogenase, putativeRecName: Full=Erythronate-4-phosphate dehydrogenase; EC=1.1.1.290; chromosome CDS1297126 1134 + 0.537037
NA PG1854 5-formyltetrahydrofolate cyclo-ligase family proteinSubName: Full=5-formyltetrahydrofolate cyclo-ligase family protein; chromosome CDS1953415 558 - 0.528674
NA PG0013 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS15731 771 + 0.525292
NA PG1525 isochorismate synthase, putativeSubName: Full=Isochorismate synthase, putative; chromosome CDS1602849 1107 - 0.512195
NA PG2034 oxidoreductase, FAD-binding, putativeSubName: Full=Oxidoreductase, FAD-binding, putative; chromosome CDS2135000 792 - 0.498737
NA PG2109 hydroxymethylpyrimidine kinase/thiamin-phosphate pyrophosphorylaseRecName: Full=Thiamine-phosphate synthase; EC=2.5.1.3; AltName: Full=Thiamine-phosphate pyrophosphorylase; chromosome CDS2217599 1944 - 0.57716
apbE PG0309 thiamine biosynthesis lipoprotein ApbESubName: Full=Thiamine biosynthesis lipoprotein ApbE; chromosome CDS344100 1014 - 0.516765
bioA PG2080 adenosylmethionine--8-amino-7-oxononanoateaminot ransferaseRecName: Full=Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; EC=2.6.1.62; AltName: Full=7,8-diamino-pelargonic acid aminotransferase; AltName: Full=7,8-diaminononanoate synthase; AltName: Full=Diaminopelargonic acid synthase; chromosome CDS2179468 1302 - 0.577573
bioB PG2081 biotin synthetaseRecName: Full=Biotin synthase; EC=2.8.1.6; chromosome CDS2180759 993 - 0.541793
bioD PG2053 dethiobiotin synthaseRecName: Full=ATP-dependent dethiobiotin synthetase BioD; EC=6.3.3.3; AltName: Full=DTB synthetase; AltName: Full=Dethiobiotin synthase; chromosome CDS2150674 654 + 0.475535
bioF-2 PG1195 8-amino-7-oxononanoate synthaseSubName: Full=8-amino-7-oxononanoate synthase; chromosome CDS1274119 1149 + 0.492602
bioF-3 PG1780 8-amino-7-oxononanoate synthaseSubName: Full=8-amino-7-oxononanoate synthase; chromosome CDS1868926 1188 + 0.516835
cbiA PG1163 cobyrinic acid a,c-diamide synthaseRecName: Full=Cobyrinic acid A,C-diamide synthase; chromosome CDS1242152 1320 - 0.531061
cbiB PG1159 cobalamin biosynthesis protein CbiBRecName: Full=Cobalamin biosynthesis protein CobD; chromosome CDS1238047 1011 - 0.47181
cbiGF PG0211 cobalamin biosynthesis protein CbiG/precorrin-4 C11-methyltransferaseSubName: Full=Cobalamin biosynthesis protein CbiG/precorrin-4 C11-methyltransferase; chromosome CDS246056 1845 - 0.544173
coaBC PG1851 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligaseSubName: Full=Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; chromosome CDS1950044 1215 - 0.523457
coaD PG0369 phosphopantetheine adenylyltransferaseRecName: Full=Phosphopantetheine adenylyltransferase; EC=2.7.7.3; AltName: Full=Dephospho-CoA pyrophosphorylase; AltName: Full=Pantetheine-phosphate adenylyltransferase; Short=PPAT; chromosome CDS403350 462 + 0.538961
cobL PG0212 precorrin-6Y C5,15-methyltransferase, decarboxylatingSubName: Full=Precorrin-6Y C5,15-methyltransferase, decarboxylating; chromosome CDS247914 1242 - 0.537037
cobU PG0701 cobinamide kinase/cobinamide phosphate guanylyltransferaseSubName: Full=Cobinamide kinase/cobinamide phosphate guanylyltransferase; chromosome CDS756651 537 + 0.515829
dxs PG2217 deoxyxylulose-5-phosphate synthaseRecName: Full=1-deoxy-D-xylulose-5-phosphate synthase; EC=2.2.1.7; AltName: Full=1-deoxyxylulose-5-phosphate synthase; Short=DXP synthase; Short=DXPS; chromosome CDS2329763 1905 + 0.539633
fetB PG0669 heme-binding protein FetBSubName: Full=Heme-binding protein FetB; chromosome CDS719893 882 + 0.461451
folA PG2061 dihydrofolate reductaseRecName: Full=Dihydrofolate reductase; EC=1.5.1.3; chromosome CDS2158562 489 + 0.529652
folB PG2091 dihydroneopterin aldolaseSubName: Full=Dihydroneopterin aldolase; chromosome CDS2191317 354 + 0.5
folC PG0463 folylpolyglutamate synthaseSubName: Full=Folylpolyglutamate synthase; chromosome CDS506407 1290 - 0.528682
folD PG1116 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolaseRecName: Full=Bifunctional protein FolD; Includes: RecName: Full=Methylenetetrahydrofolate dehydrogenase; EC=1.5.1.5; Includes: RecName: Full=Methenyltetrahydrofolate cyclohydrolase; EC=3.5.4.9; chromosome CDS1189071 891 + 0.540965
folE PG0625 GTP cyclohydrolase IRecName: Full=GTP cyclohydrolase 1; EC=3.5.4.16; AltName: Full=GTP cyclohydrolase I; Short=GTP-CH-I; chromosome CDS678728 582 + 0.505155
folK PG1541 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinaseRecName: Full=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; EC=2.7.6.3; AltName: Full=6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase; Short=PPPK; AltName: Full=7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; Short=HPPK; chromosome CDS1620466 450 + 0.513333
folP PG1589 dihydropteroate synthaseSubName: Full=Dihydropteroate synthase; chromosome CDS1666683 846 - 0.559102
hemH PG0127 ferrochelataseRecName: Full=Ferrochelatase; EC=4.99.1.1; AltName: Full=Heme synthase; AltName: Full=Protoheme ferro-lyase; chromosome CDS148690 1038 + 0.546243
hprA PG1190 glycerate dehydrogenaseSubName: Full=Glycerate dehydrogenase; chromosome CDS1272252 954 + 0.497904
ilvE PG1290 branched-chain amino acid aminotransferaseSubName: Full=Branched-chain amino acid aminotransferase; chromosome CDS1368393 1020 + 0.515686
kbl PG0481 2-amino-3-ketobutyrate CoA ligaseSubName: Full=2-amino-3-ketobutyrate CoA ligase; chromosome CDS521522 1191 - 0.527288
lipA PG0504 lipoate synthaseRecName: Full=Lipoyl synthase; EC=2.8.1.8; AltName: Full=Lip-syn; Short=LS; AltName: Full=Lipoate synthase; AltName: Full=Lipoic acid synthase; AltName: Full=Sulfur insertion protein LipA; chromosome CDS544374 849 + 0.501767
lipB PG1343 lipoate-protein ligase BRecName: Full=Octanoyltransferase; EC=2.3.1.181; AltName: Full=Lipoate-protein ligase B; AltName: Full=Lipoyl/octanoyl transferase; AltName: Full=Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase; chromosome CDS1423768 1479 + 0.494253
menA PG2187 1,4-dihydroxy-2-naphthoate octaprenyltransferaseSubName: Full=1,4-dihydroxy-2-naphthoate octaprenyltransferase; chromosome CDS2293846 888 - 0.513514
menB PG1523 naphthoate synthaseSubName: Full=Naphthoate synthase; chromosome CDS1600260 819 - 0.509158
menD PG1524 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylaseRecName: Full=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Short=SEPHCHC synthase; EC=2.2.1.9; AltName: Full=Menaquinone biosynthesis protein MenD; chromosome CDS1601103 1734 - 0.520761
metK PG1896 S-adenosylmethionine synthaseRecName: Full=S-adenosylmethionine synthase; Short=AdoMet synthase; EC=2.5.1.6; AltName: Full=MAT; AltName: Full=Methionine adenosyltransferase; chromosome CDS1994726 1290 + 0.532558
nadA PG1578 quinolinate synthetase complex, subunit ASubName: Full=Quinolinate synthetase complex, subunit A; chromosome CDS1655606 927 + 0.497303
nadB PG1576 L-aspartate oxidaseSubName: Full=L-aspartate oxidase; chromosome CDS1653156 1557 + 0.529223
nadC PG1577 nicotinate-nucleotide pyrophosphorylaseSubName: Full=Nicotinate-nucleotide pyrophosphorylase; chromosome CDS1654759 828 + 0.508454
nadD PG0058 nicotinate (nicotinamide) nucleotide adenylyltransferaseRecName: Full=Probable nicotinate-nucleotide adenylyltransferase; EC=2.7.7.18; AltName: Full=Deamido-NAD(+) diphosphorylase; AltName: Full=Deamido-NAD(+) pyrophosphorylase; AltName: Full=Nicotinate mononucleotide adenylyltransferase; Short=NaMN adenylyltransferase; chromosome CDS71059 594 + 0.5
panB PG0588 3-methyl-2-oxobutanoate hydroxymethyltransferaseRecName: Full=3-methyl-2-oxobutanoate hydroxymethyltransferase; EC=2.1.2.11; AltName: Full=Ketopantoate hydroxymethyltransferase; Short=KPHMT; chromosome CDS645386 822 - 0.536496
panC PG0477 pantoate--beta-alanine ligaseRecName: Full=Pantothenate synthetase; Short=PS; EC=6.3.2.1; AltName: Full=Pantoate--beta-alanine ligase; AltName: Full=Pantoate-activating enzyme; chromosome CDS518842 846 - 0.537825
panD PG1114 aspartate-1-decarboxylaseRecName: Full=Aspartate 1-decarboxylase; EC=4.1.1.11; AltName: Full=Aspartate alpha-decarboxylase; Contains: RecName: Full=Aspartate 1-decarboxylase beta chain; Contains: RecName: Full=Aspartate 1-decarboxylase alpha chain; Flags: Precursor; chromosome CDS1187177 357 + 0.490196
panE PG2205 2-dehydropantoate 2-reductaseRecName: Full=2-dehydropantoate 2-reductase; EC=1.1.1.169; chromosome CDS2316261 945 + 0.536508
pdxA PG2067 pyridoxal phosphate biosynthetic protein PdxARecName: Full=4-hydroxythreonine-4-phosphate dehydrogenase; EC=1.1.1.262; AltName: Full=4-(phosphohydroxy)-L-threonine dehydrogenase; chromosome CDS2163355 1098 + 0.542805
pdxH PG1714 pyridoxamine-phosphate oxidaseRecName: Full=Pyridoxine/pyridoxamine 5-phosphate oxidase; EC=1.4.3.5; AltName: Full=PNP/PMP oxidase; Short=PNPOx; AltName: Full=Pyridoxal 5-phosphate synthase; chromosome CDS1801938 645 - 0.524031
pdxJ PG0630 pyridoxal phosphate biosynthetic protein PdxJRecName: Full=Pyridoxine 5-phosphate synthase; Short=PNP synthase; EC=2.6.99.2; chromosome CDS683532 717 + 0.543933
pncB PG0057 nicotinate phosphoribosyltransferaseRecName: Full=Nicotinate phosphoribosyltransferase; Short=NAPRTase; EC=6.3.4.21; chromosome CDS69875 1185 + 0.4827
ribBA PG0599 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase IIRecName: Full=Riboflavin biosynthesis protein RibBA; Includes: RecName: Full=3,4-dihydroxy-2-butanone 4-phosphate synthase; Short=DHBP synthase; EC=4.1.99.12; Includes: RecName: Full=GTP cyclohydrolase-2; EC=3.5.4.25; AltName: Full=GTP cyclohydrolase II; chromosome CDS656575 1218 + 0.512315
ribD PG0155 riboflavin biosynthesis protein RibDRecName: Full=Riboflavin biosynthesis protein RibD; chromosome CDS177951 993 - 0.557905
ribE PG0733 riboflavin synthase, alpha subunitSubName: Full=Riboflavin synthase, alpha subunit; chromosome CDS783314 603 + 0.514096
ribF PG0957 riboflavin biosynthesis protein RibFSubName: Full=Riboflavin biosynthesis protein RibF; chromosome CDS1017220 972 + 0.481481
ribH PG1428 riboflavin synthase, beta subunitRecName: Full=6,7-dimethyl-8-ribityllumazine synthase; Short=DMRL synthase; Short=LS; Short=Lumazine synthase; EC=2.5.1.78; chromosome CDS1514627 486 - 0.493827
serC PG1278 phosphoserine aminotransferaseRecName: Full=Phosphoserine aminotransferase; EC=2.6.1.52; AltName: Full=Phosphohydroxythreonine aminotransferase; Short=PSAT; chromosome CDS1355492 1083 + 0.473684
thiC PG2110 thiamine biosynthesis protein ThiCRecName: Full=Phosphomethylpyrimidine synthase; EC=4.1.99.17; AltName: Full=Hydroxymethylpyrimidine phosphate synthase; Short=HMP-P synthase; Short=HMP-phosphate synthase; Short=HMPP synthase; AltName: Full=Thiamine biosynthesis protein ThiC; chromosome CDS2219539 1764 - 0.573129
thiF PG0446 thiF proteinSubName: Full=ThiF protein; chromosome CDS486739 708 + 0.54661
thiG PG2108 thiG proteinRecName: Full=Thiazole synthase; EC=2.8.1.10; chromosome CDS2216761 780 - 0.574359
thiH PG2107 thiH proteinSubName: Full=ThiH protein; chromosome CDS2215636 1113 - 0.561545
thiL PG0637 thiamine monophosphate kinaseRecName: Full=Thiamine-monophosphate kinase; Short=TMP kinase; Short=Thiamine-phosphate kinase; EC=2.7.4.16; chromosome CDS689154 1041 - 0.530259
thiS PG2111 thiS proteinSubName: Full=ThiS protein; chromosome CDS2221372 201 - 0.577114
trpG PG0713 anthranilate synthase component IISubName: Full=Anthranilate synthase component II; chromosome CDS767243 597 - 0.549414
ubiE PG0977 ubiquinone/menaquinone biosynthesis methyltransferase UbiERecName: Full=Demethylmenaquinone methyltransferase; EC=2.1.1.163; AltName: Full=Menaquinone biosynthesis C-methyltransferase UbiE; chromosome CDS1039439 738 + 0.493225