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2024-05-05 13:40:28

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Shewanella oneidensis MR-1, MR-1

Number of genes found: 150

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
SO0025 conserved hypothetical proteinchromosome CDS30558 525 + 0.420952
SO0027 protoporphyrinogen oxidase, putativechromosome CDS31656 555 + 0.43964
SO0131 conserved hypothetical proteinchromosome CDS140071 570 - 0.5
SO0160 transporter, putativechromosome CDS166258 1560 - 0.476923
SO0413 kinase, putativechromosome CDS428222 618 - 0.453074
SO0506 conserved hypothetical protein TIGR00148chromosome CDS532473 1467 - 0.498296
SO0585 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS610994 936 - 0.502137
SO0774 5-formyltetrahydrofolate cyclo-ligase family proteinchromosome CDS786827 675 - 0.531852
SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 familychromosome CDS790275 1224 + 0.556373
SO1033 iron-compound ABC transporter, ATP-binding protein, putativechromosome CDS1072108 858 + 0.487179
SO1090 ApbE family protein, putativechromosome CDS1128548 840 + 0.484524
SO1183 oxidoreductase, FAD-bindingchromosome CDS1226116 1215 + 0.487243
SO1321 CobD-related proteinchromosome CDS1374935 990 - 0.482828
SO1418 apbE family proteinchromosome CDS1475755 1128 - 0.382979
SO1478 methylase, putativechromosome CDS1541126 774 + 0.489664
SO1604 4'-phosphopantetheinyl transferase family proteinchromosome CDS1687735 957 + 0.490073
SO1667 pterin-4-alpha-carbinolamine dehydratasechromosome CDS1754358 339 + 0.469027
SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase, putativechromosome CDS2008349 876 - 0.492009
SO1981 conserved hypothetical proteinchromosome CDS2085532 1473 + 0.443313
SO2103 apbE family proteinchromosome CDS2200732 828 + 0.496377
SO2179 hypothetical proteinchromosome CDS2290975 876 + 0.484018
SO2200 ribosomal protein S6 modification protein, putativechromosome CDS2314957 993 - 0.436052
SO2417 iron-sulfur cluster-binding proteinchromosome CDS2524374 435 + 0.489655
SO2713 transporter, putativechromosome CDS2831457 666 - 0.463964
SO3108 siroheme synthase, N-terminal component, putativechromosome CDS3236703 912 - 0.467105
SO3359 oxygen-independent coproporphyrinogen III oxidase, putativechromosome CDS3500972 1158 + 0.455959
SO3497 aminotransferase, class IIIchromosome CDS3647921 1341 + 0.494407
SO3720 conserved hypothetical proteinchromosome CDS3866150 426 - 0.41784
SO3877 hypothetical proteinchromosome CDS4025060 399 + 0.388471
SO3895 HesA/MoeB/ThiF family proteinchromosome CDS4040229 804 - 0.480099
SO3923 thiH protein, putativechromosome CDS4070138 1440 + 0.490972
SO3925 biotin synthase family proteinchromosome CDS4072216 1080 + 0.496296
SO4283 apbE family proteinchromosome CDS4462599 1059 + 0.354108
SO4316 hemY protein, putativechromosome CDS4493603 1167 + 0.457584
SO4520 oxygen-independent coproporphyrinogen III oxidase, putativechromosome CDS4714407 1338 + 0.464126
SO4550 methyltransferase domain proteinchromosome CDS4746578 639 - 0.458529
SO4713 menaquinone-specific isochorismate synthase, putativechromosome CDS4916550 1359 + 0.476085
SO4719 conserved hypothetical proteinchromosome CDS4924191 825 + 0.469091
SO4720 ABC transporter, permease proteinchromosome CDS4925012 708 + 0.504237
SO4723 molybdopterin biosynthesis MoeA protein, putativechromosome CDS4927038 1800 + 0.522222
SO4724 molybdenum cofactor biosynthesis protein A, putativechromosome CDS4928854 984 + 0.480691
SO4727 conserved hypothetical proteinchromosome CDS4932064 639 + 0.4241
apbE thiamin biosynthesis lipoprotein ApbEchromosome CDS1152199 1044 + 0.441571
bioA adenosylmethionine--8-amino-7-oxononanoateaminot ransferasechromosome CDS2856886 1386 + 0.524531
bioB biotin synthasechromosome CDS2855711 1053 - 0.503324
bioD dethiobiotin synthasechromosome CDS2852586 696 - 0.45977
bioF 8-amino-7-oxononanoate synthasechromosome CDS2854284 1206 - 0.498342
birA birA bifunctional proteinchromosome CDS224657 960 + 0.442708
coaD phosphopantetheine adenylyltransferasechromosome CDS4882671 492 + 0.495935
cobA uroporphyrin-III C-methyltransferasechromosome CDS3871804 831 - 0.488568
cobO cob(I)alamin adenosyltransferasechromosome CDS1078726 624 + 0.487179
cobQ cobyric acid synthase CobQchromosome CDS1077178 1533 + 0.507502
cobS cobalamin 5'-phosphate synthasechromosome CDS1075576 789 + 0.487959
cobT nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferasechromosome CDS1074417 1053 + 0.502374
cobU cobinamide kinase/cobinamide phosphate guanylyltransferasechromosome CDS1076361 606 + 0.509901
cysD sulfate adenylyltransferase, subunit 2chromosome CDS3870815 909 - 0.470847
cysH phosphoadenosine phosphosulfate reductasechromosome CDS3880171 738 - 0.487805
dfp DNA/pantothenate metabolism flavoproteinchromosome CDS4426076 1227 + 0.512632
dxs deoxyxylulose-5-phosphate synthasechromosome CDS1601183 1869 - 0.501338
folA dihydrofolate reductasechromosome CDS3803928 483 - 0.438923
folB dihydroneopterin aldolasechromosome CDS1342213 351 + 0.45584
folC FolC bifunctional proteinchromosome CDS3183345 1296 - 0.506944
folD methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolasechromosome CDS1878808 855 - 0.493567
folE GTP cyclohydrolase Ichromosome CDS4430777 651 + 0.477727
folK-1 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinasechromosome CDS901020 489 - 0.476483
folK-2 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinasechromosome CDS1342606 504 + 0.438492
folP dihydropteroate synthasechromosome CDS1241974 834 + 0.5
folX D-erythro-7,8-dihydroneopterin triphosphate epimerasechromosome CDS3052942 369 + 0.430894
fre NAD(P)H-flavin reductasechromosome CDS530850 699 - 0.515021
gshA glutamate--cysteine ligasechromosome CDS3716992 1695 - 0.465487
gshB glutathione synthetasechromosome CDS849536 948 - 0.501055
hemA glutamyl-tRNA reductasechromosome CDS3983506 1251 - 0.482814
hemB-1 delta-aminolevulinic acid dehydratasechromosome CDS2713793 1002 + 0.511976
hemB-2 delta-aminolevulinic acid dehydratasechromosome CDS4374591 1011 + 0.487636
hemC porphobilinogen deaminasechromosome CDS4490624 933 + 0.508039
hemD uroporphyrinogen-III synthasechromosome CDS4491561 741 + 0.496626
hemE uroporphyrinogen decarboxylasechromosome CDS459487 1065 + 0.477934
hemF coproporphyrinogen III oxidase, aerobicchromosome CDS42152 909 + 0.508251
hemH-1 ferrochelatasechromosome CDS2118185 1047 + 0.499522
hemH-2 ferrochelatasechromosome CDS3493111 984 - 0.468496
hemL glutamate-1-semialdehyde-2,1-aminomutasechromosome CDS1352002 1293 - 0.5058
hemN oxygen-independent coproporphyrinogen III oxidasechromosome CDS4934130 1377 + 0.458969
hemX hemX proteinchromosome CDS4492362 1245 + 0.481928
hprA glycerate dehydrogenasechromosome CDS3789338 957 - 0.490073
ilvB acetolactate synthase isozyme I, large subunitchromosome CDS3397800 1746 + 0.438144
ilvC ketol-acid reductoisomerasechromosome CDS4541742 1479 - 0.491548
ilvE branched-chain amino acid aminotransferasechromosome CDS340328 1092 + 0.486264
ilvG acetolactate synthase II, large subunitchromosome CDS4539490 1659 - 0.523207
ilvI acetolactate synthase III, large subunitchromosome CDS2389858 1719 - 0.46655
ispA geranyltranstransferasechromosome CDS1603073 882 - 0.478458
ispB octaprenyl-diphosphate synthasechromosome CDS3807924 972 + 0.471193
kbl 2-amino-3-ketobutyrate coenzyme A ligasechromosome CDS4871990 1194 - 0.490787
ldhA D-lactate dehydrogenasechromosome CDS1000301 990 - 0.470707
lipA lipoic acid synthetasechromosome CDS1204274 966 - 0.517598
lipB lipoate-protein ligase Bchromosome CDS1205236 660 - 0.501515
menB naphthoate synthasechromosome CDS4950014 903 + 0.48505
menC O-succinylbenzoate-CoA synthasechromosome CDS4769562 1125 + 0.478222
menD 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylasechromosome CDS4766990 1722 + 0.507549
menG-1 S-adenosylmethionine:2-demethylmenaquinonemethyl transferasechromosome CDS2697978 495 - 0.416162
menG-2 S-adenosylmethionine:2-demethylmenaquinonemethyl transferasechromosome CDS4364881 486 + 0.485597
metK S-adenosylmethionine synthetasechromosome CDS957987 1152 - 0.482639
moaA molybdenum cofactor biosynthesis protein Achromosome CDS4640134 981 - 0.470948
moaC molybdenum cofactor biosynthesis protein Cchromosome CDS4639541 480 - 0.50625
moaD molybdenum cofactor biosynthesis protein Dchromosome CDS4639270 252 - 0.496032
moaE molybdenum cofactor biosynthesis protein Echromosome CDS4638801 468 - 0.521368
mobA molybdopterin-guanine dinucleotide biosynthesis proteinchromosome CDS4926414 594 + 0.508417
moeA molybdopterin biosynthesis MoeA proteinchromosome CDS144154 1254 - 0.512759
moeB molybdopterin biosynthesis MoeB proteinchromosome CDS143381 762 - 0.469816
mog molybdenum cofactor biosynthesis protein Mogchromosome CDS71134 534 + 0.5
nad nicotinate (nicotinamide) nucleotide adenylyltransferasechromosome CDS1213530 639 - 0.478873
nadA quinolinate synthetase complex, subunit Achromosome CDS2450283 1074 + 0.472998
nadB L-aspartate oxidasechromosome CDS1397393 1614 - 0.489467
nadE NH(3)-dependent NAD(+) synthetasechromosome CDS2120953 831 + 0.482551
pabA para-aminobenzoate synthase glutamine amidotransferase, component IIchromosome CDS637616 576 + 0.477431
pabB para-aminobenzoate synthase, component Ichromosome CDS2335512 1404 - 0.482906
pabC 4-amino-4-deoxychorismate lyasechromosome CDS2751361 810 - 0.496296
panB 3-methyl-2-oxobutanoate hydroxymethyltransferasechromosome CDS900169 795 - 0.501887
panC pantoate--beta-alanine ligasechromosome CDS899247 846 - 0.485816
panE 2-dehydropantoate 2-reductasechromosome CDS3968045 984 + 0.489837
panK pantothenate kinasechromosome CDS225619 951 - 0.440589
pdxA pyridoxal phosphate biosynthetic protein PdxAchromosome CDS3797649 987 + 0.490375
pdxB erythronate-4-phosphate dehydrogenasechromosome CDS3190127 1131 - 0.469496
pdxH pyridoxamine 5'-phosphate oxidasechromosome CDS3016931 639 - 0.471049
pdxJ pyridoxal phosphate biosynthetic protein PdxJchromosome CDS1407463 738 + 0.48645
ribA GTP cyclohydrolase IIchromosome CDS2948996 612 - 0.439542
ribB 3,4-dihydroxy-2-butanone 4-phosphate synthasechromosome CDS150203 654 - 0.519878
ribBA 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putativechromosome CDS3612338 1104 - 0.491848
ribD riboflavin biosynthesis protein RibDchromosome CDS3614172 1146 - 0.513962
ribE-1 riboflavin synthase, alpha subunitchromosome CDS2408811 621 + 0.436393
ribE-2 riboflavin synthase, alpha subunitchromosome CDS3613508 657 - 0.482496
ribF riboflavin biosynthesis protein RibFchromosome CDS3688663 936 - 0.467949
ribH riboflavin synthase, beta subunitchromosome CDS3611721 477 - 0.459119
rimK-1 ribosomal protein S6 modification proteinchromosome CDS568931 906 + 0.465784
rimK-2 ribosomal protein S6 modification proteinchromosome CDS2383894 900 + 0.482222
serA D-3-phosphoglycerate dehydrogenasechromosome CDS890275 1230 - 0.484553
serC phosphoserine aminotransferasechromosome CDS2514676 1104 - 0.468297
thiC thiamin biosynthesis protein ThiCchromosome CDS2558537 2166 - 0.510157
thiDE phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putativechromosome CDS2556957 1581 - 0.500316
thiF thiF protein, putativechromosome CDS2556058 903 - 0.48505
thiG thiG proteinchromosome CDS2555092 765 - 0.517647
thiH thiH proteinchromosome CDS2553968 1128 - 0.47961
thiL thiamin-monophosphate kinasechromosome CDS3610267 957 - 0.491118
thiS thiS protein, putativechromosome CDS2555858 204 - 0.416667
trpE anthranilate synthase component Ichromosome CDS3129858 1725 + 0.497971
trpG glutamine amido-transferasechromosome CDS3131593 609 + 0.505747
ubiA 4-hydroxybenzoate polyprenyl transferasechromosome CDS493080 861 + 0.466899
ubiE ubiquinone/menaquinone biosynthesis methlytransferase UbiEchromosome CDS4366790 756 + 0.478836
ubiG 3-demethylubiquinone-9 3-methyltransferasechromosome CDS2519024 711 + 0.455696
ubiH 2-octaprenyl-6-methoxyphenol hydroxylasechromosome CDS789015 1224 + 0.513889
ubiX phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putativechromosome CDS3958550 660 - 0.513636