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2024-04-30 08:50:48

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720

Number of genes found: 173

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Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
STM0163 pyridoxine phosphate biosynthetic proteinchromosome CDS192411 984 + 0.556911
STM0769 putative cytoplasmic proteinchromosome CDS833339 699 + 0.596566
STM0771 putative ABC-type cobalamin/Fe3+-siderophores transport system, ATPase componentchromosome CDS835496 777 + 0.563707
STM1546 putative monooxygenasechromosome CDS1622640 1509 - 0.528827
STM2175 putative monooxygenasechromosome CDS2271771 1194 - 0.588777
STM2405 putative thiamine pyrophosphate enzymeschromosome CDS2520388 1653 - 0.591047
STM2573 putative ketopantoate reductasechromosome CDS2718475 918 - 0.489107
STM2921 putative flavoproteinchromosome CDS3063182 594 + 0.577441
STM2922 putative 3-polyprenyl-4-hydroxybenzoate decarboxylasechromosome CDS3063775 1428 + 0.555322
STM3350 putative inner membrane proteinchromosome CDS3517981 732 - 0.539617
STM4012 putative coproporphyrinogen III oxidase and related FeS oxidoreductasechromosome CDS4220856 1242 - 0.479871
STM4161 putative protein involved in thiamine biosynthesischromosome CDS4378924 201 - 0.567164
STM4431 putative thiamine pyrophosphate-requiring enzymechromosome CDS4674770 1050 + 0.575238
STM4432 putative thiamine pyrophosphate-requiring enzymechromosome CDS4675900 810 + 0.540741
acpT putative phosphopantetheinyl transferasechromosome CDS3750673 579 + 0.588946
allP putative NCS1 family, allantoin transport proteinchromosome CDS582566 1314 + 0.459665
apbA ketopantoate reductasechromosome CDS486780 912 - 0.526316
apbE putative thiamine biosynthesis lipoproteinchromosome CDS2364276 1053 - 0.564103
asrB anaerobic sulfide reductasechromosome CDS2687490 819 + 0.555556
bioA 7,8-diaminopelargonic acid synthetasechromosome CDS858794 1290 - 0.586822
bioB biotin synthetasechromosome CDS860170 1041 + 0.551393
bioD dethiobiotin synthetasechromosome CDS863096 687 + 0.590975
bioF 7-keto-8-aminopelargonic acid synthetasechromosome CDS861207 1158 + 0.604491
birA biotin-[acetylCoA carboxylase] holoenzyme synthetasechromosome CDS4357697 963 + 0.499481
btuB outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23chromosome CDS4348110 1845 + 0.517615
btuC vitamin B12 transport proteinchromosome CDS1419571 981 + 0.593272
btuD vitamin B12 transport proteinchromosome CDS1421194 750 + 0.565333
btuR cob(I)alamin and cobinamide adenolsyltransferasechromosome CDS1815127 591 + 0.539763
cbiA synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2112422 1380 - 0.557971
cbiC synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2110823 633 - 0.554502
cbiD synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2109684 1140 - 0.557018
cbiE synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2109085 606 - 0.577558
cbiF synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2107760 774 - 0.572351
cbiG synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2106724 1056 - 0.556818
cbiH synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2105999 726 - 0.568871
cbiJ synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2105211 792 - 0.594697
cbiK synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2104414 795 - 0.557233
cbiL synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2103704 714 - 0.578431
cbiP synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2099682 1521 - 0.560158
cbiT synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2108517 579 - 0.559586
cibB synthesis of vitamin B12 adenosyl cobalamide precursorchromosome CDS2111466 960 - 0.590625
citG putative modifier of citrate lyase proteinchromosome CDS682406 897 - 0.606466
citG2 putative modifier of citrate lyase proteinchromosome CDS72929 909 + 0.547855
citX putative cytoplasmic proteinchromosome CDS683274 552 - 0.619565
citX2 putative cytoplasmic proteinchromosome CDS72400 552 + 0.559783
coaA pantothenate kinasechromosome CDS4358694 951 - 0.45531
cobS cobalamin 5'-phosphate synthasechromosome CDS2098400 744 - 0.564516
cobT nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferasechromosome CDS2097303 1071 - 0.598506
cobU cobinamide kinasechromosome CDS2099140 546 - 0.549451
cysD ATP-sulfurylase, subunit 1chromosome CDS3074391 909 - 0.530253
cysG siroheme synthasechromosome CDS3627468 1374 + 0.580786
cysH 3'-phosphoadenosine 5'-phosphosulfate reductasechromosome CDS3088189 735 - 0.564626
dfp flavoproteinchromosome CDS3923518 1224 + 0.550654
dxs 1-deoxyxylulose-5-phosphate synthase; flavoproteinchromosome CDS474630 1863 - 0.555556
entC isochorismate synthetase, enterochelin biosynthesischromosome CDS656255 1176 + 0.582483
fepC enterobactin transporterchromosome CDS650785 795 - 0.568553
fhuC hydroxymate-dependent iron transportchromosome CDS225976 798 + 0.588972
fimY putative regulatory proteinchromosome CDS611492 723 - 0.46473
folA dihydrofolate reductase type Ichromosome CDS100839 480 + 0.5375
folB dihydroneopterin aldolasechromosome CDS3371486 363 - 0.498623
folC folylpolyglutamate synthasechromosome CDS2477354 1269 - 0.584712
folD 5,10-methylene-tetrahydrofolate dehydrogenasechromosome CDS602702 867 - 0.544406
folE GTP cyclohydrolase Ichromosome CDS2290444 669 - 0.526158
folK 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, PPPKchromosome CDS213398 480 - 0.575
folP 7,8-dihydropteroate synthasechromosome CDS3463737 849 - 0.53828
gshA gamma-glutamate-cysteine ligasechromosome CDS2966935 1557 - 0.521516
gshB glutathione synthetasechromosome CDS3256939 948 + 0.545359
hemA glutamyl tRNA reductasechromosome CDS1874454 1257 - 0.567224
hemB 5-aminolevulinate dehydratase ( porphobilinogen synthase)chromosome CDS423678 975 - 0.553846
hemC porphobilinogen deaminasechromosome CDS4145049 957 - 0.586207
hemD uroporphyrinogen III synthasechromosome CDS4144312 741 - 0.576248
hemE uroporphyrinogen decarboxylasechromosome CDS4384145 1065 + 0.575587
hemF coproporphyrinogen III oxidasechromosome CDS2561205 900 + 0.573333
hemG protoporphyrin oxidasechromosome CDS4195136 546 + 0.503663
hemH ferrochelatasechromosome CDS546914 963 + 0.568017
hemL glutamate-1-semialdehyde aminotransferasechromosome CDS237211 1281 - 0.593287
hemN O2-independent coproporphyrinogen III oxidasechromosome CDS4211171 1374 + 0.517467
hemX uroporphyrinogen III methylasechromosome CDS4143121 1170 - 0.55641
hemY protein for a late step of protoheme IX synthesischromosome CDS4141922 1200 - 0.578333
ilvB acetolactate synthase I, large subunitchromosome CDS3995917 1689 - 0.560687
ilvC ketol-acid reductoisomerasechromosome CDS4117377 1476 + 0.566396
ilvE branched-chain amino-acid aminotransferasechromosome CDS4110897 930 + 0.545161
ilvG acetolactate synthase II, large subunitchromosome CDS4108973 1647 + 0.563449
ilvI valine sensitive acetolactate synthase III, large subunitchromosome CDS135898 1662 + 0.546931
ispA geranyltranstransferase (farnesyldiphosphate synthase)chromosome CDS476516 900 - 0.574444
ispB octaprenyl diphosphate synthasechromosome CDS3473347 972 + 0.533951
kbl 2-amino-3-ketobutyrate CoA ligasechromosome CDS3903917 1197 - 0.558897
kdtB phosphopantetheine adenylyltransferasechromosome CDS3920624 480 + 0.527083
ldhA NAD-dependent fermentative D-lactate dehydrogenasechromosome CDS1740029 990 + 0.517172
lipA lipoate synthase, an iron-sulfur enzymechromosome CDS694862 966 - 0.548654
lipB putative ligase in lipoate biosynthesischromosome CDS697288 576 - 0.496528
lplA lipoate-protein ligase Achromosome CDS4831413 1017 - 0.567355
menA 1,4-dihydroxy-2-naphthoate octaprenyltransferasechromosome CDS4298154 930 - 0.555914
menB dihydroxynaphtoic acid synthetasechromosome CDS2413999 858 - 0.562937
menC o-succinylbenzoyl-CoA synthasechromosome CDS2413037 963 - 0.601246
menD 2-oxoglutarate decarboxylasechromosome CDS2415626 1671 - 0.594853
menF isochorismate synthasechromosome CDS2417382 1296 - 0.568673
menG putative methyltransferase in menaquinone biosynthesis proteinchromosome CDS4297576 486 - 0.549383
metK methionine adenosyltransferase 1chromosome CDS3251693 1155 + 0.542857
moaA molybdopterin biosynthesis, protein Achromosome CDS870638 990 + 0.541414
moaB molybdopterin biosynthesis, protein Bchromosome CDS871649 513 + 0.555556
moaC molybdopterin biosynthesis, protein Cchromosome CDS872164 486 + 0.555556
moaD molybdopterin biosynthesis proteinchromosome CDS872636 252 + 0.575397
moaE molybdopterin converting factor, subunit 2chromosome CDS872889 453 + 0.609272
mobA putative molybdopterin-guanine dinucleotide biosynthesis proteinchromosome CDS4202196 585 - 0.552137
mobB molybdopterin-guanine dinucleotide biosynthesis protein Bchromosome CDS4201684 516 - 0.498062
moeA molybdopterin biosynthesis proteinchromosome CDS915711 1242 - 0.57971
moeB molybdopterin biosynthesischromosome CDS914962 750 - 0.574667
mog putative molybdochetalasechromosome CDS8729 591 + 0.56176
nadA quinolinate synthetase, A proteinchromosome CDS820233 1044 + 0.552682
nadB quinolinate synthetase, B proteinchromosome CDS2780428 1623 + 0.551448
nadC quinolinate phosphoribosyltransferasechromosome CDS168373 894 - 0.579418
nadD putative nicotinic acid mononucleotide adenylyltransferasechromosome CDS706846 642 - 0.548287
nadE NAD synthetasechromosome CDS1390119 828 - 0.530193
nadR trifunctional proteinchromosome CDS4835809 1233 + 0.508516
pabA p-aminobenzoate synthetase component IIchromosome CDS3619759 564 - 0.551418
pabB p-aminobenzoate synthetase, component Ichromosome CDS1921169 1365 + 0.552381
pabC 4-amino-4-deoxychorismate lyasechromosome CDS1281800 810 + 0.514815
panB 3-methyl-2-oxobutanoate hydroxymethyltransferasechromosome CDS212486 792 - 0.573232
panC pantothenate synthetasechromosome CDS211506 855 - 0.545029
panD aspartate 1-decarboxylasechromosome CDS211031 381 - 0.535433
panF SSS family sodium/pantothenate symporterchromosome CDS3552266 1452 + 0.552342
pdxA NAD-dependent dehydrogenase/carboxylasechromosome CDS103481 990 - 0.586869
pdxB erythronate-4-phosphate dehydrogenasechromosome CDS2482355 1137 - 0.566403
pdxH pyridoxine 5'-phosphate oxidasechromosome CDS1522704 657 + 0.550989
pdxJ carries out condensation and ring closure step after PdxA in pyridoxine biosynthesischromosome CDS2722442 732 - 0.575137
pdxK pyridoxal-pyridoxamine kinasechromosome CDS2547554 867 - 0.570934
pdxY pyridoxal kinase 2chromosome CDS1524821 861 + 0.5482
pncB nicotinate phosphoribosyltransferasechromosome CDS1096831 1203 - 0.544472
pnuC NMN family, nucleoside/purine/pyrimidine transporterchromosome CDS821301 720 + 0.506944
poxB pyruvate dehydrogenase/oxidase FAD and thiamine PPi cofactors, cytoplasmic in absence of cofactorschromosome CDS1010107 1719 - 0.570681
ptpS putative synthasechromosome CDS3092934 363 + 0.528926
rfbI CDP-6-deoxy-delta3,4-glucoseen reductasechromosome CDS2174120 993 - 0.404834
ribA GTP cyclohydrolase IIchromosome CDS1804109 591 + 0.500846
ribB 3,4 dihydroxy-2-butanone-4-phosphate synthasechromosome CDS3357851 654 - 0.561162
ribD pyrimidine deaminasechromosome CDS469844 1104 + 0.603261
ribE riboflavin synthase, alpha chainchromosome CDS1503552 642 + 0.515576
ribF flavokinase and FAD synthetasechromosome CDS52872 939 + 0.567625
ribH riboflavin synthase, beta chainchromosome CDS471036 471 + 0.543524
rimK ribosomal protein S6 modification proteinchromosome CDS946561 903 + 0.563677
serA D-3-phosphoglycerate dehydrogenasechromosome CDS3223279 1233 - 0.553934
serC 3-phosphoserine aminotransferasechromosome CDS1061475 1089 + 0.536272
tbpA thiamine-binding periplasmic proteinchromosome CDS125687 984 - 0.549797
thiC 5'-phosphoryl-5-aminoimidazolechromosome CDS4380491 1896 - 0.580696
thiD hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase)chromosome CDS2240261 801 - 0.605493
thiE thiamin phosphate synthasechromosome CDS4379856 636 - 0.595912
thiF thiamin biosynthesis protein, thiazole moietychromosome CDS4379105 759 - 0.578393
thiG thiamin biosynthesis protein, thiazole moietychromosome CDS4378152 771 - 0.614786
thiH thiamin biosynthesis protein, thiazole moietychromosome CDS4377022 1134 - 0.544092
thiL thiamin-monophosphate kinasechromosome CDS472025 978 + 0.56544
thiM hydoxyethylthiazole kinase (THZ kinase)chromosome CDS2241048 798 - 0.610276
trpD anthranilate synthase, component IIchromosome CDS1820112 1596 + 0.573308
trpE anthranilate synthase, component Ichromosome CDS1818550 1563 + 0.579655
ubiA p-hydroxybenzoate: octaprenyltransferasechromosome CDS4455210 873 + 0.547537
ubiB FMN reductasechromosome CDS4185162 702 + 0.529915
ubiC chorismate pyruvate lyasechromosome CDS4454699 498 + 0.542169
ubiE S-adenosylmethioninechromosome CDS4177291 756 + 0.481481
ubiF putative monooxygenasechromosome CDS736055 1176 + 0.59949
ubiG 3-demethylubiquinone-9 3-methyltransferasechromosome CDS2380316 729 + 0.550069
ubiH 2-octaprenyl-6-methoxyphynol hydroxylasechromosome CDS3218465 1179 - 0.609839
ubiX 3-octaprenyl-4-hydroxybenzoate carboxy-lyasechromosome CDS2466582 570 - 0.550877
visC putative monooxygenasechromosome CDS3217137 1203 - 0.572735
yabJ putative ABC-transport proteinchromosome CDS123410 708 - 0.580508
yacE putative nucleotide kinasechromosome CDS163207 621 - 0.549114
ycdW putative oxidoreductasechromosome CDS1225066 939 + 0.550586
yfeK putative periplasmic proteinchromosome CDS2550588 381 + 0.493438
ygdL putative enzymechromosome CDS3138843 807 - 0.560099
ygfA putative ligasechromosome CDS3222350 549 + 0.575592
yggW putative oxidasechromosome CDS3263114 1137 + 0.546174
yiaE 2-keto-D-gluconate reductasechromosome CDS3833687 975 + 0.568205
yieE putative cytoplasmic proteinchromosome CDS4056350 756 + 0.531746
yigC putative oxidoreductasechromosome CDS4183598 1479 + 0.538202
ynfK putative dethiobiotin synthasechromosome CDS1566447 696 + 0.518678