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2024-05-05 14:13:14

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Silicibacter pomeroyi DSS-3, DSS-3

Number of genes found: 158

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPO1321 thiamine pyrophosphokinasechromosome CDS1384220 693 + 0.691198
NA SPO2385 benzaldehyde lyase, putativechromosome CDS2529082 1731 + 0.619873
NA SPOA0309 sulphoacetaldehyde acetyltransferase, putativemegaplasmid CDS339974 1680 - 0.628571
NA SPOA0291 branched-chain amino acid aminotransferase, putativemegaplasmid CDS320935 960 - 0.648958
NA SPO1166 aminotransferase, class III familychromosome CDS1215666 1353 - 0.624538
NA SPO2625 conserved domain proteinchromosome CDS2778591 654 + 0.701835
NA SPO2885 acetolactate synthase, catabolic, putativechromosome CDS3082404 1620 + 0.685185
NA SPO0105 monooxygenase family proteinchromosome CDS108119 1260 - 0.660317
NA SPO2108 trimethylamine methyltransferase family proteinchromosome CDS2243870 1545 - 0.646602
NA SPO1791 sulfate/tungstate uptake family ABC transporter, periplasmic substrate-binding proteinchromosome CDS1906992 816 + 0.66299
NA SPO2799 molybdenum cofactor biosynthesis protein Achromosome CDS2986945 1008 + 0.618056
NA SPOA0113 aminotransferase, class IIImegaplasmid CDS117468 1389 + 0.613391
NA SPO0410 molybdopterin biosynthesis protein MoeB, putativechromosome CDS421878 1041 + 0.667627
NA SPO1602 trimethylamine methyltransferase family proteinchromosome CDS1697521 1509 - 0.705103
NA SPO3903 6-pyruvoyl tetrahydropterin synthase, putativechromosome CDS3963192 357 + 0.610644
NA SPO1761 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putativechromosome CDS1881259 1122 + 0.656863
NA SPO2639 molybdopterin biosynthesis proteinchromosome CDS2792216 1041 - 0.715658
NA SPO3419 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 familychromosome CDS3622756 1263 + 0.678543
NA SPO1804 conserved hypothetical proteinchromosome CDS1921535 708 + 0.689266
NA SPO3851 HemY domain proteinchromosome CDS4066155 1482 - 0.65857
NA SPO0291 molybdenum cofactor biosynthesis protein Bchromosome CDS302852 543 + 0.626151
NA SPO1801 conserved domain proteinchromosome CDS1919486 729 - 0.668038
NA SPOA0312 glutamate-1-semialdehyde 2,1-aminomutase, putativemegaplasmid CDS346464 1290 - 0.608527
NA SPO1789 sulfate/tungstate uptake family ABC transporter, permease proteinchromosome CDS1905532 714 + 0.654062
NA SPO0925 conserved hypothetical proteinchromosome CDS982206 648 + 0.70679
NA SPO0913 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS966937 954 + 0.66457
NA SPO2005 aminotransferase, class IIIchromosome CDS2133365 1332 - 0.659159
NA SPO0006 oxygen-independent coproporphyrinogen III oxidase, putativechromosome CDS4536 1158 - 0.630397
NA SPO1700 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS1811125 969 + 0.625387
NA SPO0167 trimethylamine methyltransferase family proteinchromosome CDS187255 1569 - 0.645634
NA SPO1136 aminotransferase, class IIIchromosome CDS1191289 1374 - 0.634643
NA SPO2422 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS2573459 942 - 0.654989
NA SPO0415 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS427642 948 - 0.654008
NA SPO2412 aldolase, putativechromosome CDS2563843 696 + 0.675287
NA SPO2056 thiamine-phosphate pyrophosphorylase, putativechromosome CDS2188790 621 + 0.695652
NA SPO3354 phosphoserine aminotransferasechromosome CDS3552346 1182 + 0.646362
NA SPO3633 molybdopterin converting factor, subunit 2chromosome CDS3835239 444 - 0.650901
NA SPO2134 trimethylamine methyltransferase family proteinchromosome CDS2267949 1545 + 0.654369
NA SPO0682 monooxygenase family proteinchromosome CDS711175 1662 - 0.638989
NA SPO3101 folD bifunctional proteinchromosome CDS3311973 891 - 0.664422
NA SPO2883 thiamine pyrophosphate-binding domain proteinchromosome CDS3080178 1551 - 0.682141
NA SPO0405 cobinamide kinase/cobinamide phosphate guanyltransferasechromosome CDS417761 525 - 0.638095
NA SPO1371 2-octaprenyl-6-methoxyphenol hydroxylase, putativechromosome CDS1437104 1197 - 0.678363
NA SPO3291 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid binding protein, putativechromosome CDS3490052 1284 - 0.621495
NA SPO2750 trimethylamine methyltransferase family proteinchromosome CDS2942424 1560 - 0.648077
NA SPO0388 aminotransferase, class IVchromosome CDS400950 864 - 0.655093
NA SPO2762 biotin--acetyl-CoA-carboxylase ligasechromosome CDS2952399 750 - 0.686667
NA SPO3853 uroporphyrinogen-III synthase, putativechromosome CDS4069017 714 - 0.684874
NA SPO3289 phenylacetate-CoA ligase, putativechromosome CDS3487873 1218 - 0.665025
NA SPOA0418 acetolactate synthase, large subunit, putativemegaplasmid CDS464662 1692 + 0.663712
NA SPO3153 monooxygenase, putativechromosome CDS3360454 1692 + 0.647754
NA SPO2141 pyridoxamine 5''-phosphate oxidase, putativechromosome CDS2276242 630 - 0.644444
NA SPO1422 cobalamin 5'-phosphate synthasechromosome CDS1492825 765 - 0.724183
NA SPO2863 CobNchromosome CDS3060642 3294 + 0.676685
NA SPO1401 aminotransferase, class IIIchromosome CDS1470439 1323 + 0.673469
NA SPO2954 5-formyltetrahydrofolate cyclo-ligase family proteinchromosome CDS3153136 558 - 0.702509
NA SPOA0313 trimethylamine methyltransferase family proteinmegaplasmid CDS347750 1545 - 0.611003
NA SPO3692 monooxygenase, putativechromosome CDS3901098 1188 + 0.661616
NA SPO1559 folD bifunctional proteinchromosome CDS1648760 891 + 0.664422
NA SPO0049 thiamine biosynthesis protein ThiFchromosome CDS49417 984 + 0.64126
NA SPOA0352 aminotransferase, class IIImegaplasmid CDS392691 1356 - 0.644543
NA SPO0632 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS653027 987 + 0.653495
NA SPO0565 trimethylamine methyltransferase family proteinchromosome CDS566124 1524 + 0.67126
NA SPO3263 hypothetical proteinchromosome CDS3461163 453 + 0.622517
NA SPO2855 cobalt chelatase, pCobT subunitchromosome CDS3051930 1878 + 0.668797
NA SPO3244 L-aspartate oxidase, putativechromosome CDS3446850 1551 + 0.720825
NA SPO3471 aminotransferase, class IIIchromosome CDS3674581 1395 + 0.620072
NA SPOA0065 thiamine pyrophosphate-dependent enzymemegaplasmid CDS64023 1602 - 0.701623
NA SPO3604 D-amino acid aminotransferase, putativechromosome CDS3810300 861 - 0.602787
NA SPO1570 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome CDS1660969 993 + 0.667674
ahcY SPO3861 adenosylhomocysteinasechromosome CDS4074441 1389 - 0.609791
apbE SPOA0036 thiamin biosynthesis lipoprotein ApbEmegaplasmid CDS31686 1086 + 0.642726
bioB SPO3338 biotin synthasechromosome CDS3540260 957 - 0.672936
coaBC SPO0408 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligasechromosome CDS420163 1197 + 0.680869
coaD SPO2200 pantetheine-phosphate adenylyltransferasechromosome CDS2339581 498 - 0.654619
coaE SPO3890 dephospho-CoA kinasechromosome CDS4103834 594 - 0.632997
cobA-1 SPO2632 uroporphyrin-III C-methyltransferasechromosome CDS2786378 777 + 0.693694
cobA-2 SPO2873 uroporphyrin-III C-methyltransferasechromosome CDS3071547 729 + 0.69273
cobB SPO2872 cobyrinic acid a,c-diamide synthasechromosome CDS3070255 1296 + 0.699846
cobD SPO3225 cobalamin biosynthesis protein CobDchromosome CDS3429703 921 + 0.679696
cobF SPO2874 precorrin-6A synthasechromosome CDS3072268 744 + 0.670699
cobH SPO2865 precorrin-8X methylmutasechromosome CDS3065059 630 + 0.685714
cobI SPO2866 precorrin-2 C20-methyltransferasechromosome CDS3065685 729 + 0.66118
cobJ SPO2867 precorrin-3B C17-methyltransferasechromosome CDS3066410 753 + 0.665339
cobK SPO2868 precorrin-6x reductasechromosome CDS3067135 753 - 0.678619
cobL SPO2869 precorrin-6Y C5,15-methyltransferase (decarboxylating)chromosome CDS3067886 1200 + 0.7025
cobM SPO2871 precorrin-4 C11-methyltransferasechromosome CDS3069447 795 + 0.665409
cobO SPO0262 cob(I)alamin adenosyltransferasechromosome CDS280092 600 - 0.641667
cobQ SPO1242 cobyric acid synthase CobQchromosome CDS1310964 1458 - 0.685871
cobU SPO1423 nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferasechromosome CDS1493668 1011 + 0.709199
cysH SPO2635 phosophoadenylyl-sulfate reductasechromosome CDS2789186 762 + 0.656168
ddsA SPO0319 decaprenyl diphosphate synthasechromosome CDS331351 999 - 0.654655
dxs SPO0247 1-deoxy-D-xylulose-5-phosphate synthasechromosome CDS267660 1929 - 0.659409
folC SPO3818 folC bifunctional proteinchromosome CDS4034465 1275 + 0.679216
folD SPO1560 folD bifunctional proteinchromosome CDS1649647 879 + 0.650739
folK SPO3205 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinasechromosome CDS3416475 567 - 0.61552
folP SPO1363 dihydropteroate synthasechromosome CDS1428875 795 + 0.669182
gshA SPO3626 glutamate--cysteine ligasechromosome CDS3828329 1371 - 0.648432
gshB SPO0401 glutathione synthetasechromosome CDS413677 933 + 0.625938
hemA-1 SPO2596 5-aminolevulinic acid synthasechromosome CDS2751613 1224 - 0.633987
hemA-2 SPOA0194 5-aminolevulinic acid synthasemegaplasmid CDS204899 1242 - 0.611916
hemB SPO2076 porphobilinogen synthasechromosome CDS2210595 999 + 0.657658
hemC SPO3649 porphobilinogen deaminasechromosome CDS3851322 960 + 0.688542
hemE SPO3648 uroporphyrinogen decarboxylasechromosome CDS3850181 1035 - 0.661836
hemF SPO3653 coproporphyrinogen III oxidase, aerobicchromosome CDS3855759 885 - 0.648588
hemH SPO0073 ferrochelatasechromosome CDS74429 996 + 0.629518
hemL SPO1597 glutamate-1-semialdehyde 2,1-aminomutasechromosome CDS1692095 1275 + 0.672941
hemN SPO3532 oxygen-independent coproporphyrinogen III oxidasechromosome CDS3740159 1356 + 0.643068
ilvB SPO2578 acetolactate synthase, large subunit, biosynthetic typechromosome CDS2730491 1752 + 0.630708
ilvC SPO1366 ketol-acid reductoisomerasechromosome CDS1432639 1023 - 0.623656
ilvE SPO0253 branched-chain amino acid aminotransferasechromosome CDS273044 867 + 0.636678
ispA SPO0248 farnesyl diphosphate synthasechromosome CDS269616 867 - 0.688581
kbl SPO3360 2-amino-3-ketobutyrate coenzyme A ligasechromosome CDS3558594 1185 - 0.648101
lipA SPO2102 lipoic acid synthetasechromosome CDS2238776 951 - 0.645636
lipB SPO1389 lipoate-protein ligase Bchromosome CDS1456579 651 - 0.654378
metK SPOA0011 S-adenosylmethionine synthetasemegaplasmid CDS9429 1182 + 0.641286
moaA SPO2153 molybdenum cofactor biosynthesis protein Achromosome CDS2288113 1170 + 0.659829
moaC SPO2152 molybdenum cofactor biosynthesis protein Cchromosome CDS2287643 474 + 0.622363
moaD SPO3634 molybdopterin converting factor, subunit 1chromosome CDS3835688 246 - 0.686992
mobA SPO0307 molybdopterin-guanine dinucleotide biosynthesis protein Achromosome CDS320619 636 + 0.694969
mobB SPO0308 molybdopterin-guanine dinucleotide biosynthesis protein Bchromosome CDS321251 492 + 0.654472
moeA SPO0310 molybdopterin biosynthesis protein MoeAchromosome CDS322536 1260 + 0.7
nadA SPO3243 quinolinate synthetase complex, A subunitchromosome CDS3445790 1053 + 0.633428
nadC SPO3245 nicotinate-nucleotide pyrophosphorylasechromosome CDS3448397 867 + 0.678201
nadD SPO0449 nicotinate (nicotinamide) nucleotide adenylyltransferasechromosome CDS460454 642 + 0.688474
nahG SPO2510 salicylate hydroxylasechromosome CDS2657585 1167 - 0.717224
nirE SPOA0221 nitrite reductase heme biosynthesis E proteinmegaplasmid CDS243923 774 + 0.684755
paaF SPO0742 phenylacetate-CoA ligasechromosome CDS772101 1311 + 0.627765
pabB SPO0924 para-aminobenzoate synthase component Ichromosome CDS981130 1122 + 0.68984
panB SPO0102 3-methyl-2-oxobutanoate hydroxymethyltransferasechromosome CDS104880 840 + 0.661905
panC SPO0103 pantoate--beta-alanine ligasechromosome CDS105716 858 + 0.667832
panE-1 SPO0966 2-dehydropantoate 2-reductasechromosome CDS1017416 996 + 0.703815
panE-2 SPO1601 2-dehydropantoate 2-reductasechromosome CDS1696589 936 - 0.69765
pdxA-1 SPO2457 4-hydroxythreonine-4-phosphate dehydrogenasechromosome CDS2611284 960 + 0.708333
pdxA-2 SPOA0246 4-hydroxythreonine-4-phosphate dehydrogenasemegaplasmid CDS270521 1026 - 0.596491
pdxJ SPO3201 pyridoxal phosphate biosynthetic protein PdxJchromosome CDS3412399 747 - 0.662651
phhB SPO3733 4a-hydroxytetrahydrobiopterin dehydratasechromosome CDS3945994 294 + 0.612245
pncB SPO0095 nicotinate phosphoribosyltransferasechromosome CDS95526 1344 + 0.627976
pobA SPOA0046 4-hydroxybenzoate hydroxylasemegaplasmid CDS40261 1170 - 0.635897
pqqC SPO1502 coenzyme PQQ synthesis protein Cchromosome CDS1577736 726 - 0.666667
ribBA SPO3427 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase IIchromosome CDS3630346 1092 + 0.678571
ribD SPO1754 riboflavin biosynthesis protein RibDchromosome CDS1873910 1095 + 0.713242
ribE SPO1759 riboflavin synthase, alpha subunitchromosome CDS1879908 588 + 0.670068
ribF SPO3154 riboflavin biosynthesis protein RibFchromosome CDS3362242 933 + 0.664523
ribH-1 SPO0268 riboflavin synthase, beta subunitchromosome CDS285959 738 - 0.653117
ribH-2 SPO1762 riboflavin synthase, beta subunitchromosome CDS1882382 552 + 0.653986
serA SPO3355 D-3-phosphoglycerate dehydrogenasechromosome CDS3553615 1596 + 0.625313
thiD SPO0045 phosphomethylpyrimidine kinasechromosome CDS46122 804 + 0.654229
thiE SPO0048 thiamine-phosphate pyrophosphorylasechromosome CDS48842 597 + 0.646566
thiG SPO0047 thiazole biosynthesis protein ThiGchromosome CDS48081 765 + 0.653595
thiS SPO0046.1 thiamine biosynthesis protein ThiSchromosome CDS47883 195 + 0.661538
tpa SPO0673 taurine--pyruvate aminotransferasechromosome CDS701701 1398 - 0.630186
trpE SPO2146 anthranilate synthase component Ichromosome CDS2281509 1512 + 0.65873
trpG SPO2149 anthranilate synthase component IIchromosome CDS2285237 582 + 0.635739
ubiA SPO3630 4-hydroxybenzoate polyprenyl transferasechromosome CDS3831971 963 + 0.655244
ubiE SPO0145 ubiquinone/menaquinone biosynthesis methyltransferase UbiEchromosome CDS160766 774 - 0.616279
ubiG SPO0067 3-demethylubiquinone-9 3-methyltransferasechromosome CDS70268 747 + 0.634538
xsc SPO3561 sulphoacetaldehyde acetyltransferasechromosome CDS3773624 1791 - 0.654383