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2024-05-21 16:33:47

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529

Number of genes found: 69

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Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Bd1864 6-pyruvoyl-tetrahydropterin synthase, putativeSubName: Full=6-pyruvoyl-tetrahydropterin synthase, putative; chromosome CDS1789262 480 + 0.477083
NA Bd3195 Hxdroxypyruvate reductaseSubName: Full=Hxdroxypyruvate reductase; EC=1.1.1.81; chromosome CDS3118145 960 + 0.5375
NA Bd1186 SubName: Full=InterPro: 5-formyltetrahydrofolate cyclo-ligase; EC=6.3.3.2; chromosome CDS1127509 570 + 0.503509
NA Bd1723 putative octaprenyl-diphosphate synthaseSubName: Full=Putative octaprenyl-diphosphate synthase; Flags: Precursor; chromosome CDS1658687 990 + 0.520202
NA Bd0323 putative secreted proteinSubName: Full=Putative secreted protein; chromosome CDS307619 651 - 0.511521
NA Bd0048 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS42664 510 + 0.52549
NA Bd1475 hypothetical proteinSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS1395093 765 - 0.496732
NA Bd2870 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS2780126 633 - 0.508689
NA Bd1456 FAD monooxygenase, PheA/TfdB familySubName: Full=FAD monooxygenase, PheA/TfdB family; EC=1.14.13.-; chromosome CDS1377260 1413 + 0.503185
NA Bd1356 SubName: Full=Putative uncharacterized protein; chromosome CDS1281448 582 - 0.484536
NA Bd1311 methyltransferase-related proteinSubName: Full=Methyltransferase-related protein; chromosome CDS1238247 657 + 0.488584
NA Bd2354 THIF family proteinSubName: Full=THIF family protein; chromosome CDS2255639 831 - 0.523466
NA Bd0713 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS671573 1110 - 0.518919
NA Bd1533 putative GTP cyclohydrolase, riboflavin biosynthesisSubName: Full=Putative GTP cyclohydrolase, riboflavin biosynthesis; EC=3.5.4.25; chromosome CDS1454510 1248 - 0.523237
Pts Bd1968 6-pyruvoyltetrahydropterin synthaseSubName: Full=6-pyruvoyltetrahydropterin synthase; EC=4.2.3.12; chromosome CDS1880230 390 - 0.44359
ahcY Bd1339 adenosylhomocysteinaseRecName: Full=Adenosylhomocysteinase; EC=3.3.1.1; AltName: Full=S-adenosyl-L-homocysteine hydrolase; Short=AdoHcyase; chromosome CDS1265722 1416 + 0.482345
birA Bd2763 biotin--synthetaseSubName: Full=Biotin--synthetase; EC=6.3.4.15; chromosome CDS2681503 756 + 0.521164
btuB Bd3571 outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23SubName: Full=Outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23; Flags: Precursor; chromosome CDS3471716 1833 + 0.530824
coaE Bd3147 RecName: Full=Dephospho-CoA kinase; EC=2.7.1.24; AltName: Full=Dephosphocoenzyme A kinase; chromosome CDS3059549 606 - 0.542904
dfp Bd3562 flavoproteinSubName: Full=Flavoprotein; EC=6.3.2.5; chromosome CDS3462603 1248 + 0.515224
folA Bd3231 RecName: Full=Dihydrofolate reductase; EC=1.5.1.3; chromosome CDS3148800 510 + 0.523529
folD Bd3295 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolaseRecName: Full=Bifunctional protein FolD; Includes: RecName: Full=Methylenetetrahydrofolate dehydrogenase; EC=1.5.1.5; Includes: RecName: Full=Methenyltetrahydrofolate cyclohydrolase; EC=3.5.4.9; chromosome CDS3214624 867 - 0.523645
folE Bd2522 RecName: Full=GTP cyclohydrolase 1; EC=3.5.4.16; AltName: Full=GTP cyclohydrolase I; chromosome CDS2430038 729 - 0.48011
hemA Bd3446 SubName: Full=HemA protein; EC=1.2.1.-; chromosome CDS3357529 909 + 0.49945
hemB Bd3444 RecName: Full=Delta-aminolevulinic acid dehydratase; EC=4.2.1.24; chromosome CDS3356420 1023 - 0.523949
hemC Bd3447 hydroxymethylbilane synthaseSubName: Full=Hydroxymethylbilane synthase; EC=2.5.1.61; chromosome CDS3358428 1509 + 0.532803
hemE Bd3452 uroporphyrinogen decarboxylaseSubName: Full=Uroporphyrinogen decarboxylase; EC=4.1.1.37; chromosome CDS3362748 1020 + 0.527451
hemG Bd2899 protoporphyrinogen oxidaseSubName: Full=Protoporphyrinogen oxidase; EC=1.3.3.4; chromosome CDS2809530 564 + 0.466312
hemG Bd3455 SubName: Full=HemG protein; EC=1.3.3.4; chromosome CDS3365110 1218 + 0.525452
hemH Bd3456 FerrochelataseRecName: Full=Ferrochelatase; EC=4.99.1.1; AltName: Full=Heme synthase; AltName: Full=Protoheme ferro-lyase; chromosome CDS3366320 1008 + 0.532738
hemL Bd3449 glutamate-1-semialdehyde 2,1-aminomutaseRecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase; Short=GSA; EC=5.4.3.8; AltName: Full=Glutamate-1-semialdehyde aminotransferase; Short=GSA-AT; chromosome CDS3359924 1281 + 0.533177
hemN Bd3454 oxygen-independent coproporphyrinogen III oxidaseRecName: Full=Coproporphyrinogen-III oxidase; EC=1.3.99.22; chromosome CDS3363764 1350 + 0.505926
hemN Bd3870 oxygen-independent coproporphyrinogen III oxidase, putativeSubName: Full=Oxygen-independent coproporphyrinogen III oxidase, putative; EC=1.3.3.3; chromosome CDS3733645 1173 + 0.489344
ilvE Bd1736 branched-chain amino acid aminotransferaseSubName: Full=Branched-chain amino acid aminotransferase; EC=2.6.1.42; chromosome CDS1670684 975 + 0.50359
ilvE Bd1131 branched-chain amino acid aminotransferaseSubName: Full=Branched-chain amino acid aminotransferase; EC=2.6.1.42; chromosome CDS1072642 1068 + 0.521536
ispB Bd0557 octaprenyl diphosphate synthaseSubName: Full=Octaprenyl diphosphate synthase; EC=2.5.1.-; chromosome CDS515494 957 + 0.517241
lipB Bd0766 RecName: Full=Octanoyltransferase; EC=2.3.1.181; AltName: Full=Lipoate-protein ligase B; AltName: Full=Lipoyl/octanoyl transferase; AltName: Full=Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase; chromosome CDS724775 708 - 0.514124
lplA Bd2507 RecName: Full=Lipoate-protein ligase A; EC=2.7.7.63; AltName: Full=Lipoate--protein ligase; chromosome CDS2412360 1020 + 0.5
menA Bd0546 1,4-dihydroxy-2-naphthoate octaprenyltransferaseSubName: Full=1,4-dihydroxy-2-naphthoate octaprenyltransferase; EC=2.5.1.-; Flags: Precursor; chromosome CDS507638 900 + 0.52
menA Bd0558 1,4-dihydroxy-2-naphthoate octaprenyltransferaseSubName: Full=1,4-dihydroxy-2-naphthoate octaprenyltransferase; EC=2.5.1.-; chromosome CDS516447 1068 + 0.514981
menB Bd3492 Naphthoate synthaseSubName: Full=Naphthoate synthase; chromosome CDS3402686 900 - 0.532222
menD Bd3484 2-oxoglutarate decarboxylase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthaseRecName: Full=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Short=SEPHCHC synthase; EC=2.2.1.9; AltName: Full=Menaquinone biosynthesis protein MenD; chromosome CDS3394162 1581 - 0.504111
menF Bd3485 menaquinone-specific isochorismate synthaseSubName: Full=Menaquinone-specific isochorismate synthase; EC=5.4.4.2; chromosome CDS3395739 1089 - 0.555556
metK Bd0850 methionine adenosyltransferaseRecName: Full=S-adenosylmethionine synthase; Short=AdoMet synthase; EC=2.5.1.6; AltName: Full=MAT; AltName: Full=Methionine adenosyltransferase; chromosome CDS795930 1164 + 0.522337
mtrF Bd3646 efflux pump component MtrFSubName: Full=Efflux pump component MtrF; chromosome CDS3537951 1545 + 0.528803
nadA Bd3735 quinolinate synthetase ASubName: Full=Quinolinate synthetase A; chromosome CDS3610677 966 + 0.511387
nadB Bd3127 L-aspartate oxidaseSubName: Full=L-aspartate oxidase; EC=1.4.3.16; chromosome CDS3032530 1614 + 0.539033
nadC Bd2762 SubName: Full=NadC protein; EC=2.4.2.19; chromosome CDS2680679 825 + 0.539394
panB Bd3560 3-methyl-2-oxobutanoate hydroxymethyltransferaseRecName: Full=3-methyl-2-oxobutanoate hydroxymethyltransferase; EC=2.1.2.11; AltName: Full=Ketopantoate hydroxymethyltransferase; Short=KPHMT; chromosome CDS3461049 792 + 0.520202
panC Bd3561 pantothenate synthetaseRecName: Full=Pantothenate synthetase; Short=PS; EC=6.3.2.1; AltName: Full=Pantoate--beta-alanine ligase; AltName: Full=Pantoate-activating enzyme; chromosome CDS3461837 756 + 0.515873
panD Bd3565 RecName: Full=Aspartate 1-decarboxylase; EC=4.1.1.11; AltName: Full=Aspartate alpha-decarboxylase; Contains: RecName: Full=Aspartate 1-decarboxylase beta chain; Contains: RecName: Full=Aspartate 1-decarboxylase alpha chain; Flags: Precursor; chromosome CDS3464628 375 + 0.474667
pcd Bd0889 pterin-4-alpha-carbinolamine dehydrataseRecName: Full=Putative pterin-4-alpha-carbinolamine dehydratase; Short=PHS; EC=4.2.1.96; AltName: Full=4-alpha-hydroxy-tetrahydropterin dehydratase; AltName: Full=Pterin carbinolamine dehydratase; Short=PCD; chromosome CDS844470 363 + 0.490358
pdxA Bd0015 pyridoxal phosphate biosynthetic proteinSubName: Full=Pyridoxal phosphate biosynthetic protein; EC=1.1.1.262; chromosome CDS15432 951 - 0.511041
pdxH Bd2568 pyridoxamine 5'-phosphate oxidaseRecName: Full=Pyridoxine/pyridoxamine 5-phosphate oxidase; EC=1.4.3.5; AltName: Full=PNP/PMP oxidase; Short=PNPOx; AltName: Full=Pyridoxal 5-phosphate synthase; chromosome CDS2482157 591 - 0.532995
pdxJ Bd1932 pyridoxal phosphate biosynthetic protein PdxJRecName: Full=Pyridoxine 5-phosphate synthase; Short=PNP synthase; EC=2.6.99.2; chromosome CDS1844883 726 + 0.475207
ppaT Bd0623 RecName: Full=Phosphopantetheine adenylyltransferase; EC=2.7.7.3; AltName: Full=Dephospho-CoA pyrophosphorylase; AltName: Full=Pantetheine-phosphate adenylyltransferase; Short=PPAT; chromosome CDS581280 483 + 0.484472
ribA Bd3038 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthaseSubName: Full=GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; EC=3.5.4.25; chromosome CDS2950629 1131 - 0.52962
ribB Bd3039 SubName: Full=RibB protein; EC=2.5.1.9; chromosome CDS2951762 600 - 0.508333
ribC Bd1507 riboflavin kinase / FAD synthase ribCSubName: Full=Riboflavin kinase / FAD synthase ribC; EC=2.7.7.2; chromosome CDS1428162 945 + 0.514286
ribD Bd3542 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductaseRecName: Full=Riboflavin biosynthesis protein RibD; chromosome CDS3445097 1185 - 0.526582
ribH Bd3037 riboflavin synthase beta chainRecName: Full=6,7-dimethyl-8-ribityllumazine synthase; Short=DMRL synthase; Short=LS; Short=Lumazine synthase; EC=2.5.1.78; chromosome CDS2950090 540 - 0.505556
serA Bd1461 phosphoglycerate dehydrogenaseSubName: Full=Phosphoglycerate dehydrogenase; EC=1.1.1.95; chromosome CDS1382462 987 - 0.524823
serA Bd2892 D-3-phosphoglycerate dehydrogenaseSubName: Full=D-3-phosphoglycerate dehydrogenase; EC=1.1.1.95; chromosome CDS2802233 1206 - 0.510779
thiB Bd0593 thiamine ABC transporterSubName: Full=Thiamine ABC transporter; Flags: Precursor; chromosome CDS549893 1041 + 0.51585
thiL Bd1008 thiamine-monophosphate kinaseRecName: Full=Thiamine-monophosphate kinase; Short=TMP kinase; Short=Thiamine-phosphate kinase; EC=2.7.4.16; chromosome CDS953889 957 - 0.524556
ubiE Bd3487 ubiquinone/menaquinone biosynthesis methyltransferaseRecName: Full=Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE; EC=2.1.1.163; EC=2.1.1.201; AltName: Full=2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; AltName: Full=Demethylmenaquinone methyltransferase; chromosome CDS3397730 708 + 0.5
ubiG Bd3625 3-demethylubiquinone-9 3-methyltransferaseSubName: Full=3-demethylubiquinone-9 3-methyltransferase; EC=2.1.1.64; chromosome CDS3521555 855 - 0.515789
ygcM Bd1863 6-pyruvoyltetrahydropterin synthaseRecName: Full=6-carboxy-5,6,7,8-tetrahydropterin synthase; EC=4.-.-.-; chromosome CDS1788855 408 - 0.495098
yqiD Bd0199 geranyltranstransferaseSubName: Full=Geranyltranstransferase; EC=2.5.1.10; chromosome CDS185085 870 + 0.51954