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2024-05-06 20:23:21

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Rhodopseudomonas palustris CGA009, CGA009

Number of genes found: 174

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Rhodopseudomonas palustris CGA009, CGA009
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RPA2008 conserved unknown proteinchromosome CDS2261081 720 + 0.683333
NA RPA3433 possible salicylate hydroxylasechromosome CDS3873751 1194 + 0.719431
NA RPA1928 ferredoxin-like protein [2Fe-2S]chromosome CDS2162133 909 - 0.654565
NA RPA2760 possible benzaldehyde lyasechromosome CDS3132481 1803 - 0.652246
NA RPA0930 possible 3-octaprenyl-4-hydroxybenzoate carboxy-lyasechromosome CDS1029992 603 - 0.674959
NA RPA2671 putative FAD-dependent monoxygenasechromosome CDS3044646 1197 - 0.669173
NA RPA0256 putative UROPORPHYRINOGEN-III synthasechromosome CDS280147 747 + 0.678715
NA RPA1040 octaprenyl-diphosphate synthasechromosome CDS1143914 1011 - 0.661721
NA RPA4126 hypothetical proteinchromosome CDS4668694 1203 - 0.537822
NA RPA0165 possible nicotinate-nucleotide adneylyltransferasechromosome CDS184539 630 + 0.65873
NA RPA2326 acetolactate synthase Ichromosome CDS2635625 1590 + 0.683648
NA RPA0467 putative glycerate dehydrogenasechromosome CDS515386 987 - 0.656535
NA RPA0422 possible dehydrogenasechromosome CDS464180 1002 - 0.657685
NA RPA4454 Antifreeze protein, type I:5-formyltetrahydrofolate cyclo-ligasechromosome CDS5030013 594 - 0.700337
NA RPA3797 conserved hypothetical proteinchromosome CDS4294303 1602 - 0.689763
NA RPA4719 molybdo-pterin binding proteinchromosome CDS5320343 210 + 0.614286
NA RPA3040 unknown proteinchromosome CDS3439761 564 + 0.689716
NA RPA0939 possible thiamine-phosphate pyrophosphorylasechromosome CDS1039233 660 - 0.709091
NA RPA4622 hypothetical proteinchromosome CDS5207241 279 - 0.641577
NA RPA3654 putative molybdopterin-guanine dinucleotide biosynthesis protein Achromosome CDS4126878 621 + 0.711755
NA RPA4593 possible branched-chain amino acid aminotransferasechromosome CDS5179104 885 + 0.628249
NA RPA3917 possible acetolactate synthase large subunitchromosome CDS4420277 1803 - 0.668331
NA RPA3336 possible lipopeptide antibiotics iturin a biosynthesis proteinchromosome CDS3762564 708 - 0.646893
NA RPA0153 possible outer membrane receptor for Fe transportchromosome CDS171435 2184 + 0.603022
NA RPA3914 putative flbT proteinchromosome CDS4414339 381 - 0.527559
NA RPA2494 hypothetical proteinchromosome CDS2836026 363 + 0.672176
NA RPA3271 putative D-isomer specific 2-hydroxyacid dehydrogenasechromosome CDS3689460 963 - 0.689512
NA RPA4722 possible glutamate synthase, small subunitchromosome CDS5326633 2835 + 0.653263
NA RPA0413 putative methylenetetrahydrofolate dehydrogenasechromosome CDS456520 888 - 0.685811
NA RPA1842 conserved unknown proteinchromosome CDS2068484 369 - 0.620596
NA RPA4363 putative 6,7-dimethyl-8-ribityllumazine synthasechromosome CDS4913326 546 - 0.686813
NA RPA0524 putative geranyltranstransferase (farnesyl-diphosphate synthase)chromosome CDS584622 927 - 0.703344
NA RPA1508 conserved hypothetical proteinchromosome CDS1674960 732 - 0.662568
NA RPA2001 putative acetolactate synthase large subunitchromosome CDS2251263 1545 + 0.678317
NA RPA0108 Possible benzaldehyde lyasechromosome CDS123611 1749 - 0.66781
NA RPA1229 probable aerobic phenylacetate-CoA ligasechromosome CDS1345938 1335 + 0.653933
NA RPA0555 possible methyltransferasechromosome CDS617018 597 - 0.693467
NA RPA2596 D-alanine aminotransferasechromosome CDS2953722 858 + 0.658508
NA RPA2399 CobN/Magnesium chelatase familychromosome CDS2721766 3903 + 0.633615
NA RPA2095 possible cobalamin (5`-phosphate) synthasechromosome CDS2353480 771 + 0.695201
NA RPA2310 putative iron ABC transporter ATP-binding proteinchromosome CDS2619681 771 + 0.688716
NA RPA4675 possible 3-(3-hydroxy-phenyl)propionate hydroxylasechromosome CDS5272528 1608 - 0.675995
NA RPA1179 beta-alanine-pyruvate transaminasechromosome CDS1286629 1455 + 0.657045
NA RPA0804 conserved hypothetical proteinchromosome CDS891595 936 + 0.684829
NA RPA4050 unknown proteinchromosome CDS4582156 798 + 0.556391
NA RPA2684 conserved unknown proteinchromosome CDS3057686 714 + 0.690476
NA RPA1505 putative porphobilinogen deaminasechromosome CDS1671137 984 + 0.64939
NA RPA4056 unknown proteinchromosome CDS4588115 927 + 0.564186
NA RPA1429 putative coenzyme F390 synthetasechromosome CDS1584105 1437 - 0.656228
NA RPA4451 unknown proteinchromosome CDS5026213 1236 + 0.659385
NA RPA3588 possible FAD-dependent monooxygenasechromosome CDS4052583 1293 - 0.686775
NA RPA4054 possible acetolactate synthase large subunitchromosome CDS4585865 1806 + 0.580842
NA RPA0149 possible ABC-type iron-siderophore transport system ATP-binding proteinchromosome CDS167433 795 - 0.672956
NA RPA2122 putative oxygen independent coproporphyrinogen III oxidasechromosome CDS2384786 1461 + 0.670089
NA RPA4760 unknown proteinchromosome CDS5372942 534 + 0.672285
CbiG RPA2085 cobalamin biosynthesis protein G; CbiGchromosome CDS2343993 393 - 0.684478
FldZ RPA4698 possible acyl transferasechromosome CDS5301816 696 + 0.66092
ahcY RPA4015 S-adenosyl L-homocysteine hydrolasechromosome CDS4543091 1410 - 0.625532
apbA/panE RPA4562 putative 2-dehydropantoate 2-reductasechromosome CDS5141828 906 + 0.674393
badI RPA0653 2-ketocyclohexanecarboxyl-CoA hydrolasechromosome CDS721568 783 - 0.628352
bchD RPA1507 putative magnesium chelatase subunit BchDchromosome CDS1673145 1773 + 0.69938
bchG RPA1530 geranylgeranyl bacteriochlorophyll synthasechromosome CDS1698749 894 + 0.677852
bchH RPA1544 magnesium-protoporphyrin O-methyltransferase BchH subunitchromosome CDS1712857 3747 + 0.663998
bchI RPA1506 putative Mg chelatase subunit Bchlchromosome CDS1672126 1023 + 0.660802
bchM RPA1546 Mg-protoporphyrin IX methyl transferasechromosome CDS1717538 702 + 0.675214
bioA RPA2970 adenosylmethionine-8-amino-7-oxononanoateaminotr ansferasechromosome CDS3364094 1278 - 0.665102
bioB RPA2045 biotin synthetasechromosome CDS2301725 1011 - 0.66271
bioD RPA2971 dethiobiotin synthetasechromosome CDS3365368 639 - 0.690141
bioF RPA2972 8-amino-7-oxononanoate synthasechromosome CDS3366003 1131 - 0.683466
birA RPA2936 putative biotin-protein ligase birAchromosome CDS3320699 807 - 0.69145
coaA RPA0315 pantothenate kinase (RTS protein)chromosome CDS342456 957 + 0.650993
coaBC RPA0081 pantothenate metabolism flavoproteinchromosome CDS92605 1347 - 0.699332
coaE RPA0300 putative dephospho-CoA kinase CoaEchromosome CDS330542 600 + 0.645
cobA RPA2082 putative uroporphyrin III methylasechromosome CDS2341120 750 - 0.698667
cobB RPA2083 putative cobyrinic acid a,c-diamide synthasechromosome CDS2341869 1362 - 0.693833
cobD, cbiB RPA0719 putative cobalamin biosynthetic protein cobDchromosome CDS792734 972 - 0.674897
cobF RPA2097 putative cobF proteinchromosome CDS2355943 765 + 0.631373
cobH RPA2090 precorrin isomerase CobHchromosome CDS2347836 630 - 0.684127
cobI RPA2089 precorrin 2 methylasechromosome CDS2347111 729 - 0.672154
cobJ RPA2088 precorrin 3 methylasechromosome CDS2346353 762 - 0.669291
cobK RPA2087 putative precorrin 6x reductasechromosome CDS2345604 783 + 0.699872
cobL RPA2086 putative precorrin 6y methylasechromosome CDS2344382 1224 - 0.714052
cobM RPA2084 precorrin 3 or 4 methylasechromosome CDS2343217 780 - 0.710256
cobN RPA0716 putative cobaltochelatase subunit CobN.chromosome CDS786757 3750 + 0.6856
cobO, cobA, btuR RPA0717 putative cob(I)alamin adenosyltransferasechromosome CDS790503 627 + 0.629984
cobQ1, cbiP RPA0718 cobyric acid synthasechromosome CDS791277 1485 + 0.681481
cobQ2 RPA2096 cobyric acid synthasechromosome CDS2354337 1575 + 0.67746
cobS RPA1257 possible cobalamin (5`-phosphate) synthasechromosome CDS1377086 798 - 0.700501
cobT, cobU RPA0712 putativenicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferasechromosome CDS783196 1056 - 0.693182
cobT1 RPA2094 putativenicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferasechromosome CDS2352419 1065 + 0.695775
cobT2 RPA0496 cobT proteinchromosome CDS551239 1905 - 0.674541
cobU RPA0714 bifunctional cobinamide kinase, cobinamide phosphate guanylyltransferase proteinchromosome CDS785084 531 + 0.691149
crtE RPA1519 geranylgeranyl pyrophosphate synthasechromosome CDS1687143 867 + 0.668973
cysD RPA0752 putative ATP sulfurylase small subunitchromosome CDS832014 870 + 0.650575
cysG RPA4215 putative siroheme synthasechromosome CDS4757673 1437 - 0.695894
cysH RPA0751 putative phosphoadenosine phosphosulfate reductasechromosome CDS830974 741 - 0.641026
dxs RPA0952 1-D-deoxyxylulose 5-phosphate synthasechromosome CDS1052203 1926 - 0.659917
dyr RPA3492 dihydrofolate reductasechromosome CDS3942439 543 - 0.653775
fecE RPA0722 putative iron(III) dicitrate ABC transporter, ATP-binding component FecEchromosome CDS795584 780 - 0.701282
folB RPA1839 putative dihydroneopterin aldolasechromosome CDS2066774 366 - 0.644809
folC RPA0072 putative folylpolyglutamate synthase / dihydrofolate synthasechromosome CDS77980 1329 + 0.697517
folK RPA1838 putative2-amino-4-hydroxy-6-hydroxymethyldihydro pteridinepyrophosphokinasechromosome CDS2066281 492 - 0.682927
folP RPA1840 dihydropteroate synthasechromosome CDS2067136 858 - 0.674825
gch1 RPA3391 possible GTP cyclohydrolase Ichromosome CDS3832523 690 - 0.663768
gltA RPA0678 possible pyridine nucleotide-linked oxidoreductase, possible glutamate synthasechromosome CDS749866 3108 + 0.639961
gshA RPA0822 gamma-glutamylcysteine synthetasechromosome CDS918960 1437 + 0.662491
gshB RPA0322 putative glutathione synthetasechromosome CDS350318 942 - 0.644374
hemA RPA1554 5-aminolevulinic acid synthase (ALAS)chromosome CDS1724111 1212 + 0.673267
hemB RPA2712 delta-aminolevulinic acid dehydratasechromosome CDS3084385 1053 - 0.669516
hemD RPA4033 Uroporphyrinogen III synthase HEM4chromosome CDS4562147 846 + 0.678487
hemE RPA1509 uroporphyrinogen decarboxylasechromosome CDS1676073 978 - 0.652352
hemF RPA1514 putative coproporphyrinogen III oxidase precursorchromosome CDS1682058 912 + 0.64693
hemN1 RPA1666 putative coproporphyrinogen oxidase IIIchromosome CDS1850616 1350 - 0.660741
hemN2 RPA0327 possible oxygen-independent coproporphyrinogen III oxidase (hemN)chromosome CDS354870 1158 - 0.675302
hemO RPA0854 5-aminolevulinic acid synthase (ALAS)chromosome CDS948749 1230 - 0.637398
hemZ RPA0875 ferrochelatasechromosome CDS971472 1038 + 0.645472
ilvB RPA3763 putative acetolactate synthase large subunitchromosome CDS4258850 1626 + 0.679582
ilvC RPA2035 ketol-acid reductoisomerasechromosome CDS2291138 1020 + 0.637255
ilvE RPA4370 putative branched-chain amino acid aminotransferasechromosome CDS4919559 1113 + 0.668464
ilvI RPA2031 acetolactate synthase (large subunit)chromosome CDS2286918 1779 + 0.64362
ilvX RPA1618 putative acetolactate synthase large subunitchromosome CDS1798909 1545 + 0.693204
ipdC RPA3116 indole-3-pyruvate decarboxylasechromosome CDS3520331 1632 - 0.669118
kdtB RPA2601 phosphopantetheine adenylyltransferasechromosome CDS2960110 510 + 0.652941
lipA2 RPA2587 lipoic acid synthetasechromosome CDS2942590 960 + 0.667708
lipB RPA3169 lipoate biosynthesis protein Bchromosome CDS3575128 738 + 0.670732
mcyE RPA3339 possible McyE polykeitde synthase and peptide synthetase (AF183408)chromosome CDS3766765 8049 - 0.625668
mdlC RPA1609 benzoylformate decarboxylasechromosome CDS1788313 1629 - 0.686925
metK RPA4016 methionine S-adenosyltransferasechromosome CDS4544761 1197 - 0.652465
moaA RPA1978 molybdenum biosynthetic protein Achromosome CDS2228415 1035 - 0.6657
moaB RPA1028 molybdopterin biosynthesis, protein Bchromosome CDS1129985 549 + 0.64663
moaC RPA2892 molybdenum cofactor biosynthesis protein Cchromosome CDS3269932 531 + 0.661017
moaD RPA1169 molybdopterin converting factor, subunit 1chromosome CDS1277397 252 - 0.678571
moaE RPA1168 molybdopterin converting factor, subunit 2chromosome CDS1276904 468 - 0.679487
modD RPA1002 putative molybdenum transport system proteinchromosome CDS1104195 876 + 0.707763
moeA RPA2902 molybdenum cofactor biosynthesis protein Achromosome CDS3278266 1212 + 0.713696
moeB RPA0086 putative molybdenum cofactor biosynthesis proteinchromosome CDS99139 801 + 0.676654
nadA RPA1055 quinolinate synthetase Achromosome CDS1163651 1113 - 0.642408
nadB RPA1054 putative L-aspartate oxidasechromosome CDS1161941 1617 - 0.710575
nadC RPA1053 nicotinate-mononucleotide pyrophosphorylasechromosome CDS1161049 876 - 0.682648
nosX RPA2066 putative nosXchromosome CDS2328326 999 + 0.681682
paaK RPA1723 phenylacetyl-CoA ligasechromosome CDS1922593 1332 - 0.645646
panB RPA3098 3-methyl-2-oxobutanoate hydroxymethyltransferasechromosome CDS3504491 825 - 0.648485
panC RPA3155 putative pantoate-beta-alanine ligasechromosome CDS3563540 852 + 0.663146
panE RPA1943 putative ketopantoate reductasechromosome CDS2186129 993 - 0.650554
panE1 RPA0020 Ketopantoate reductase ApbA/PanEchromosome CDS22786 921 - 0.672096
pdxA RPA3065 pyridoxal phosphate biosynthetic protein PdxAchromosome CDS3469954 1014 + 0.637081
pdxH RPA1196 pyridoxamine 5'-phosphate oxidasechromosome CDS1307197 639 - 0.638498
pdxJ RPA2694 pyridoxal phosphate biosynthetic protein pdxJchromosome CDS3066324 765 + 0.657516
pdxK RPA2799 putative pyridoxamine kinasechromosome CDS3174285 867 + 0.66436
phbH RPA1781 4-hydroxybenzoate hydroxylase (4-hydroxybenzoate-3-monooxygenase)chromosome CDS1996035 1173 - 0.660699
phhB RPA0404 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1)chromosome CDS443965 303 - 0.633663
pqqC RPA1948 pyrroloquinoline quinone biosynthesis protein Cchromosome CDS2192272 765 + 0.647059
ptpS RPA1658 putative 6-pyruvol tetrahydrobiopterin synthasechromosome CDS1843254 363 + 0.62259
ribB RPA1093 possible GTP cyclohydrolase II, riboflavin biosynthesischromosome CDS1197881 1110 + 0.645946
ribC RPA2727 riboflavin synthase alpha chainchromosome CDS3097004 609 + 0.668309
ribD RPA2726 putative riboflavin-specific deaminase / reductasechromosome CDS3095824 1170 + 0.708547
ribE RPA2728 riboflavin synthase, beta chainchromosome CDS3097743 492 + 0.684959
ribF RPA4379 putative riboflavin kinase ribFchromosome CDS4931916 969 - 0.683179
serA RPA1744 possible phosphoglycerate dehydrogenase (serA), Nter fragmentchromosome CDS1951061 915 - 0.676503
serA1 RPA2975 putative phosphoglycerate dehydrogenasechromosome CDS3369556 990 - 0.673737
serA2 RPA4308 putative phosphoglycerate dehydrogenasechromosome CDS4858096 1590 - 0.640881
serC RPA4309 phosphoserine aminotransferase,chromosome CDS4859855 1173 - 0.665814
thiC RPA3577 thiamin biosynthesis protein thiCchromosome CDS4042665 2001 + 0.647676
thiD RPA3971 phosphomethylpyrimidine kinase (hmp-phosphate kinase)chromosome CDS4489100 801 - 0.677903
thiE RPA3576 thiamin phosphate pyrophosphorylasechromosome CDS4041822 609 + 0.676519
thiG RPA3575 thiamin biosynthesis ThiGchromosome CDS4041053 783 + 0.673052
thiL RPA2730 putative thiamine-monophosphate kinase (thiamine-phosphate kinase).chromosome CDS3098958 981 + 0.692151
thiS RPA3574 putative thiamin biosynthesis ThiSchromosome CDS4040603 198 + 0.671717
trpG RPA4498 anthranilate synthasechromosome CDS5076071 2160 - 0.673148
ubiA RPA1153 putative 4-hydroxybenzoate-octaprenyl transferasechromosome CDS1260807 951 + 0.650894
ubiD RPA0931 Carboxylyase-related proteinchromosome CDS1030591 1539 - 0.665367
ubiE RPA0083 ubiquinone/menaquinone biosynthesis methlytransferase ubiEchromosome CDS95678 762 - 0.624672
ubiG RPA0603 putative 3-demethylubiquinone-9 3-methyltransferasechromosome CDS669548 783 - 0.646232
ubiH RPA0270 putative UbiH protein, 2-octaprenyl-6-methoxyphenol 4-monoxygenasechromosome CDS297726 1362 - 0.681351