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2024-05-03 01:45:22

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Photorhabdus luminescens subsp. laumondii TTO1, TTO1

Number of genes found: 180

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Photorhabdus luminescens subsp. laumondii TTO1, TTO1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA plu2851 chromosome CDS3385156 801 - 0.410737
NA plu3812 chromosome CDS4478419 666 - 0.346847
NA plu1699 chromosome CDS2031465 417 - 0.527578
NA plu4181 chromosome CDS4888057 1131 - 0.501326
NA plu2192 chromosome CDS2580119 1119 + 0.455764
NA plu4180 chromosome CDS4885650 2406 - 0.517872
NA plu1504 chromosome CDS1801468 1347 + 0.350408
NA plu2793 chromosome CDS3316907 705 + 0.455319
NA plu1173 chromosome CDS1357002 723 + 0.409405
NA plu2794 chromosome CDS3317608 585 + 0.398291
NA plu4078 chromosome CDS4764608 678 - 0.429204
NA plu2260 chromosome CDS2654312 1332 - 0.481231
NA plu1176 chromosome CDS1360760 1131 - 0.456233
NA plu3307 chromosome CDS3922080 1074 - 0.443203
NA plu3430 chromosome CDS4046151 327 - 0.458716
NA plu3042 chromosome CDS3541563 948 + 0.364979
NA plu3565 chromosome CDS4200468 1275 - 0.46902
NA plu4193 chromosome CDS4907212 714 - 0.305322
NA plu3563 chromosome CDS4198009 2076 - 0.445087
NA plu2324 chromosome CDS2740058 2934 + 0.470007
NA plu0649 chromosome CDS746074 813 + 0.458795
NA plu4672 chromosome CDS5449216 1179 + 0.413062
NA plu1515 chromosome CDS1814537 1059 - 0.295562
NA plu1437 chromosome CDS1728044 1623 + 0.436229
NA plu1743 chromosome CDS2078966 1314 - 0.453577
NA plu1322 chromosome CDS1536760 1668 + 0.417866
NA plu2799 chromosome CDS3325286 543 + 0.392265
NA plu3919 chromosome CDS4596872 1743 - 0.432588
NA plu2936 chromosome CDS3449821 684 + 0.396199
NA plu3604 chromosome CDS4253581 597 + 0.447236
NA plu2259 chromosome CDS2651780 2412 + 0.429519
NA plu2236 chromosome CDS2630027 1236 - 0.447411
NA plu4179 chromosome CDS4884349 1272 - 0.504717
NA plu2965 chromosome CDS3471459 669 - 0.48281
NA plu0702 chromosome CDS811020 363 - 0.460055
NA plu4506 chromosome CDS5261647 891 + 0.410774
NA plu2522 chromosome CDS2972808 417 - 0.484412
NA plu2474 chromosome CDS2914831 597 + 0.296482
NA plu2086 chromosome CDS2470852 942 + 0.453291
NA plu2227 chromosome CDS2620291 708 + 0.375706
NA plu2968 chromosome CDS3474102 786 - 0.517812
NA plu1438 chromosome CDS1729837 774 + 0.447028
NA plu2964 chromosome CDS3470879 558 - 0.442652
NA plu0743 chromosome CDS855414 552 + 0.414855
abgT plu3724 Aminobenzoyl-glutamate transport proteinchromosome CDS4389400 1527 - 0.422397
apbA plu3882 2-dehydropantoate 2-reductase (Ketopantoate reductase)chromosome CDS4559031 873 + 0.419244
apbE plu1202 Thiamine biosynthesis lipoprotein ApbE precursorchromosome CDS1385740 1029 + 0.4276
bioA plu1484 adenosylmethionine--8-amino-7-oxononanoate transaminase (DAPA aminotransferase)chromosome CDS1776856 1272 - 0.461478
bioB plu1485 biotin synthetase (biotin synthase)chromosome CDS1778222 1038 + 0.454721
bioD plu1488 dethiobiotin synthetase (dethiobiotin synthase) (DTB synthetase) (DTBS)chromosome CDS1781154 681 + 0.415565
bioF plu1486 7-keto-8-amino pelargonic acid synthetase (8-amino-7-oxononanoate synthase)chromosome CDS1779259 1152 + 0.480903
birA plu4732 bifunctional protein [Includes: biotin operon repressor; biotin-[acetyl-CoA-carboxylase] synthetase (biotin-protein ligase)]chromosome CDS5503509 960 - 0.384375
btuB plu4735 Vitamin B12 receptor precursor protein BtuBchromosome CDS5512113 1860 - 0.408602
btuC plu2662 Vitamin B12 transport system permease protein BtuCchromosome CDS3115997 1008 - 0.433532
btuD plu2661 Vitamin B12 transport ATP-binding protein BtuD (Vitamin B12-transporting ATPase)chromosome CDS3115217 777 - 0.419562
btuR plu2451 cob(I)alamin adenolsyltransferase (corrinoid adenosyltransferase)chromosome CDS2878287 597 + 0.462312
cbiA plu2999 Cobyrinic acid A,C-diamide synthasechromosome CDS3499135 1383 - 0.503977
cbiB plu2998 CbiB proteinchromosome CDS3498179 960 - 0.526042
cbiC plu2997 Precorrin-8X methylmutase (Precorrin isomerase)chromosome CDS3497532 633 - 0.530806
cbiD plu2996 Cobalamin biosynthesis protein CbiDchromosome CDS3496399 1137 - 0.525066
cbiE plu2995 Precorrin-6Y C5,15-methyltransferase [decarboxylating](precorrin-6 methyltransferase)(precorrin-6Y methylase)chromosome CDS3495800 603 - 0.500829
cbiF plu2993 Precorrin-4 C11-methyltransferase (precorrin-3-methylase)chromosome CDS3494475 774 - 0.524548
cbiG plu2992 Cobalamin biosynthesis protein G (CbiG)chromosome CDS3493433 1062 - 0.516008
cbiH plu2991 Precorrin-3B C17-methyltransferase (precorrin-3 methyltransferase) (precorrin-3 methylase)chromosome CDS3492714 726 - 0.476584
cbiJ plu2990 Precorrin-6X reductasechromosome CDS3491932 786 - 0.505089
cbiK plu2989 Cobalt chelatasechromosome CDS3491124 795 - 0.483019
cbiL plu2988 Precorrin-2 C20-methyltransferase (S-adenosyl-L-methionine--precorrin-2 methyltransferase) (SP2MT)chromosome CDS3490411 714 - 0.490196
cbiP plu2987 Cobyric acid synthasechromosome CDS3488683 1539 - 0.48538
cbiT plu2994 Precorrin-8W decarboxylasechromosome CDS3495241 570 - 0.501754
coaA plu4731 pantothenate kinase (pantothenic acid kinase)chromosome CDS5502515 951 + 0.368034
coaD plu4856 phosphopantetheine adenylyltransferase (Pantetheine-phosphate adenylyltransferase) (PPAT) (dephospho-CoA pyrophosphorylase)chromosome CDS5631083 486 + 0.417695
coaE plu3641 Dephospho-CoA kinase (Dephosphocoenzyme A kinase)chromosome CDS4289398 624 + 0.413462
cobS plu2985 Cobalamin [5'-phosphate] synthasechromosome CDS3487398 747 - 0.516734
cobT plu2980 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (N1-alpha-phosphoribosyltransferase)chromosome CDS3484276 1050 - 0.501905
cobU plu2986 Bifunctional cobalamin biosynthesis protein cobU [Includes: Cobinamide kinase; Cobinamide phosphate guanylyltransferase]chromosome CDS3488141 546 - 0.505495
crtE plu4337 chromosome CDS5065885 903 + 0.435216
cysD plu0709 sulfate adenylyltransferase subunit 2 (sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit)chromosome CDS818336 909 + 0.453245
cysG plu0708 sirohaem synthasechromosome CDS816914 1413 + 0.478415
cysH plu0705 phosphoadenosine phosphosulfate reductase (PAPS reductase, thioredoxin dependent) (PADOPS reductase) (3'-phosphoadenylsulfate reductase) (PAPS sulfotrchromosome CDS815178 735 + 0.42585
dfp plu4866 DNA/pantothenate metabolism flavoproteinchromosome CDS5640130 1218 + 0.481117
dxs plu3887 1-deoxy-D-xylulose 5-phosphate synthase (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS)chromosome CDS4563031 1866 + 0.450161
fecE plu4450 Iron(III) dicitrate transport ATP-binding protein FecEchromosome CDS5199888 768 + 0.5
fepC plu4626 Ferric enterobactin transport ATP-binding protein FepCchromosome CDS5392776 813 + 0.451415
folA plu0606 dihydrofolate reductasechromosome CDS689390 486 + 0.430041
folB plu3974 dihydroneopterin aldolase (DHNA)chromosome CDS4660982 354 - 0.403955
folC plu3170 FolC bifunctional protein [Includes: Folylpolyglutamate synthase (Folylpoly-gamma-glutamate synthetase) (FPGS); Dihydrofolate synthase]chromosome CDS3730018 1299 - 0.474981
folD plu4317 bifunctional protein [includes: methylenetetrahydrofolate dehydrogenase; methenyltetrahydrofolate cyclohydrolase]chromosome CDS5042175 876 - 0.471461
folE plu1543 GTP cyclohydrolase I (GTP-CH-I)chromosome CDS1846362 660 + 0.45
folK plu0873 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin asechromosome CDS999913 516 - 0.455426
folP plu4534 Dihydropteroate synthase (DHPS) (Dihydropteroate pyrophosphorylase)chromosome CDS5295883 846 - 0.42435
fre plu4404 NAD(P)H-flavin reductase (NAD(P)H:flavin oxidoreductase)chromosome CDS5152827 702 - 0.430199
gshA plu1252 Glutamate--cysteine ligase (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS)chromosome CDS1449935 1560 + 0.421795
gshB plu1184 glutathione synthase (glutathione synthase) (GSH synthetase) (GSH-S)chromosome CDS1366819 951 - 0.457413
hemA plu2069 Glutamyl-tRNA reductasechromosome CDS2450871 1263 + 0.463183
hemB plu4407 delta-aminolevulinic acid dehydratase (porphobilinogen synthase) (ALAD) (ALADH)chromosome CDS5156176 1014 - 0.453649
hemC plu4644 porphobilinogen deaminase (PBG) (hydroxymethylbilane synthase) (HMBS) (pre-uroporphyrinogen synthase)chromosome CDS5413407 942 + 0.488323
hemD plu4645 uroporphyrinogen-III synthase (UROS) (uroporphyrinogen-III cosynthetase) (hydroxymethylbilane hydrolyase [cyclizing])chromosome CDS5414345 741 + 0.445344
hemE plu0489 uroporphyrinogen decarboxylasechromosome CDS529034 1065 + 0.473239
hemF plu1383 oxygen-dependent coproporphyrinogen III oxidasechromosome CDS1663139 909 - 0.405941
hemG plu4398 protoporphyrinogen oxidase (PPO)chromosome CDS5145111 537 - 0.376164
hemH plu3835 ferrochelatase (protoheme ferro-lyase) (heme synthetase)chromosome CDS4506210 978 - 0.398773
hemL plu0902 glutamate-1-semialdehyde 2,1-aminomutasechromosome CDS1036929 1284 - 0.490654
hemN plu0230 oxygen-independent coproporphyrinogen III oxidase (coproporphyrinogenase) (coprogen oxidase)chromosome CDS239949 1374 + 0.424309
hemX plu4646 uroporphyrin-III C-methyltransferase (urogen III methylase)chromosome CDS5415106 1125 + 0.430222
hemY plu4647 HemY proteinchromosome CDS5416234 1239 + 0.439871
ilvC plu4668 ketol-acid reductoisomerase (acetohydroxy-acidisomeroreductase) (alpha-keto-beta-hydroxylacil reductoisomerase)chromosome CDS5443372 1479 - 0.462475
ilvE plu4683 branched-chain amino acid aminotransferase (transaminase B) (BCAT)chromosome CDS5462063 927 - 0.445523
ilvG plu4685 acetolactate synthase isozyme II large subunit (AHAS-II) (acetohydroxy-acid synthase II large subunit) (ALS-II)chromosome CDS5463267 1647 - 0.448695
ilvI plu3666 acetolactate synthase isozyme III large subunit (AHAS-III) (acetohydroxy-acid synthase III large subunit) (ALS-III)chromosome CDS4315576 1728 - 0.445023
ispA plu3886 geranyltranstransferase (farnesyl-diphosphate synthase) FPP synthase)chromosome CDS4562051 918 + 0.444444
ispB plu4543 octaprenyl-diphosphate synthase (octaprenyl pyrophosphate synthetase) (OPP synthetase)chromosome CDS5304535 972 + 0.434156
kbl plu4846 2-amino-3-ketobutyrate coenzyme A ligase (AKB ligase) (glycine acetyltransferase)chromosome CDS5619769 1197 - 0.450292
ldhA plu2145 D-lactate dehydrogenase (D-LDH)chromosome CDS2527112 1005 - 0.414925
lipA plu1291 lipoic acid synthase (LIP-SYN) (lipoate synthase)chromosome CDS1499979 966 - 0.480331
lipB plu1292 lipoate-protein ligase B (lipoate biosynthesis protein B)chromosome CDS1501055 666 - 0.436937
menA plu4764 1,4-dihydroxy-2-naphthoate octaprenyltransferase (DHNA-octaprenyltransferase)chromosome CDS5546601 918 + 0.444444
menB plu3071 naphthoate synthase (dihydroxynaphthoic acid synthetase) (DHNA synthetase)chromosome CDS3579838 858 - 0.454545
menC plu3070 O-succinylbenzoate-CoA synthase (OSB synthase) (4-(2'-carboxyphenyl)-4-oxybutyric acid synthase)chromosome CDS3578867 972 - 0.495885
menD plu3073 menaquinone biosynthesis protein menD [Includes: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (SHCHC synthase); 2-oxoglutarate decarchromosome CDS3581470 1695 - 0.477286
menF plu3074 menaquinone-specific isochorismate synthasechromosome CDS3583269 1320 - 0.475
menG plu4765 S-adenosylmethionine:2-demethylmenaquinonemethyl transferasechromosome CDS5547668 510 + 0.460784
metK plu3683 S-adenosylmethionine synthetase (methionine adenosyltransferase) (AdoMet synthetase) (MAT)chromosome CDS4338372 1173 + 0.45439
moaA plu1499 molybdenum cofactor biosynthesis protein Achromosome CDS1797662 984 + 0.450203
moaC plu1500 molybdenum cofactor biosynthesis protein Cchromosome CDS1798685 480 + 0.470833
moaD plu1501 molybdopterin [mpt] converting factor, subunit 1 (molybdenum cofactor biosynthesis protein D) (molybdopterin converting factor small subunit)chromosome CDS1799161 246 + 0.463415
moaE plu1502 molybdopterin [MPT] converting factor, subunit 2 (molybdenum cofactor biosynthesis protein E) (molybdopterin converting factor large subunit)chromosome CDS1799410 453 + 0.479029
mobA plu0379 molybdopterin-guanine dinucleotide biosynthesis protein Achromosome CDS408768 600 - 0.421667
mobB plu0378 molybdopterin-guanine dinucleotide biosynthesis protein Bchromosome CDS408253 519 - 0.433526
moeA plu1540 molybdopterin biosynthesis proteinchromosome CDS1842287 1242 - 0.460548
moeB plu1539 molybdopterin biosynthesis proteinchromosome CDS1841535 753 - 0.456839
mog plu0569 molybdopterin biosynthesis protein mogchromosome CDS645031 576 + 0.489583
nadA plu1468 quinolinate synthetase Achromosome CDS1761308 1041 + 0.445725
nadB plu3347 L-aspartate oxidase (quinolinate synthetase B)chromosome CDS3974162 1605 + 0.466044
nadC plu3637 nicotinate-nucleotide pyrophosphorylase [carboxylating] (quinolinate phosphoribosyltransferase [decarboxylating]) (QAPRTase)chromosome CDS4284984 891 + 0.414141
nadD plu1300 nicotinate-nucleotide adenylyltransferase (deamido-NAD(+) pyrophosphorylase) (deamido-NAD(+) diphosphorylase) (nicotinate mononucleotide adenylyltranschromosome CDS1508573 678 - 0.457227
nadR plu0553 Transcriptional regulator NadRchromosome CDS624264 1257 + 0.407319
paaK plu3041 Phenylacetate-coenzyme A ligase (Phenylacetyl-CoA ligase) (PA-CoA ligase)chromosome CDS3540163 1404 + 0.378917
pabA plu0393 para-aminobenzoate synthase glutamine amidotransferase, component IIchromosome CDS424719 576 + 0.427083
pabB plu2694 p-aminobenzoate synthase component Ichromosome CDS3195005 1371 + 0.417214
pabC plu2830 4-amino-4-deoxychorismate lyase (ADC lyase) (ADCL)chromosome CDS3360377 825 - 0.412121
panB plu0872 3-methyl-2-oxobutanoate hydroxymethyltransferasechromosome CDS999051 792 - 0.445707
panC plu0871 pantothenate synthetasechromosome CDS998170 855 - 0.453801
panD plu0870 aspartate 1-decarboxylase precursorchromosome CDS997722 381 - 0.454068
panF plu4086 sodium/pantothenate symporter (pantothenate permease)chromosome CDS4773046 1452 + 0.479339
pcnB plu1754 nicotinate phosphoribosyltransferasechromosome CDS2092860 1215 - 0.443621
pdxA plu0610 4-hydroxythreonine-4-phosphate dehydrogenase (4-(phosphohydroxy)-L-threonine dehydrogenase)chromosome CDS691950 1020 - 0.470588
pdxB plu3175 Erythronate-4-phosphate dehydrogenasechromosome CDS3734990 1128 - 0.453014
pdxH plu2597 pyridoxamine 5'-phosphate oxidase (PNP/PMP oxidase) (PNPOX)chromosome CDS3040318 654 - 0.426605
pdxJ plu3337 Pyridoxal phosphate biosynthetic protein PdxJ (PNP synthase)chromosome CDS3964859 732 - 0.441257
pdxY plu2595 Pyridoxamine kinase (PM kinase)chromosome CDS3037746 864 - 0.445602
pnuC plu1469 Protein PnuCchromosome CDS1762525 726 + 0.387052
ribA plu2431 GTP cyclohydrolase IIchromosome CDS2851997 609 + 0.412151
ribB plu3963 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)chromosome CDS4648636 654 - 0.469419
ribD plu3899 riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase); 5-amino-6-(5-phosphochromosome CDS4570883 1110 - 0.482883
ribE plu2610 Riboflavin synthase alpha chainchromosome CDS3053334 678 - 0.415929
ribF plu0590 riboflavin kinase/FMN adenylyltransferasechromosome CDS670993 945 + 0.440212
ribH plu3898 6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (lumazine synthase) (riboflavin synthase beta chain)chromosome CDS4570286 471 - 0.469214
serA plu3605 D-3-phosphoglycerate dehydrogenase (PGDH)chromosome CDS4254226 1242 - 0.433172
serC plu1619 3-phosphoserine aminotransferasechromosome CDS1934211 1089 + 0.439853
tbpA plu0619 Thiamine-binding periplasmic protein precursorchromosome CDS704606 1014 - 0.45858
thiC plu0486 Thiamin biosynthesis protein thiCchromosome CDS524964 1938 - 0.479876
thiD plu2782 phosphomethylpyrimidine kinase (HMP-phosphate kinase)chromosome CDS3303156 798 - 0.483709
thiE plu0485 thiamin-phosphate pyrophosphorylasechromosome CDS524330 651 - 0.488479
thiF plu0484 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate synthesis proteinchromosome CDS523570 750 - 0.48
thiG plu0482 thiamin biosynthesis protein ThiGchromosome CDS522604 768 - 0.485677
thiH plu0481 thiamin biosynthesis, thiazole moietychromosome CDS521465 1092 - 0.458791
thiL plu3896 thiamine-monophosphate kinase (thiamine-phosphate kinase)chromosome CDS4568753 990 - 0.458586
thiQ plu0617 Thiamine transport ATP-binding proteinchromosome CDS702326 708 - 0.460452
thiS plu0483 ThiS proteinchromosome CDS523373 201 - 0.422886
trpE plu2462 Anthranilate synthase component Ichromosome CDS2901650 1575 + 0.467937
trpG plu2463 Anthranilate synthase component II (Glutamine amido-transferase)chromosome CDS2903224 579 + 0.435233
ubiA plu4377 4-hydroxybenzoate octaprenyltransferase (4-HB polyprenyltransferase)chromosome CDS5109931 867 - 0.441753
ubiC plu4378 Chorismate--pyruvate lyasechromosome CDS5110820 519 - 0.43738
ubiD plu4405 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (Polyprenyl p-hydroxybenzoate decarboxylase)chromosome CDS5153539 1482 - 0.447368
ubiE plu4413 ubiquinone/menaquinone biosynthesis methyltransferasechromosome CDS5161313 756 - 0.424603
ubiF plu1313 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase UbiFchromosome CDS1522956 1182 + 0.472081
ubiG plu3051 3-demethylubiquinone-9 3-methyltransferase (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB methyltransferase)chromosome CDS3555482 723 + 0.46473
ubiH plu3600 2-octaprenyl-6-methoxyphenol hydroxylasechromosome CDS4249603 1179 - 0.476675
ubiX plu3166 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (polyprenyl p-hydroxybenzoate decarboxylase)chromosome CDS3726461 585 - 0.454701
visC plu3599 Probable monooxygenase VisCchromosome CDS4248344 1221 - 0.475839