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2024-05-03 15:09:44

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Vibrio parahaemolyticus RIMD 2210633, O3:K6

Number of genes found: 155

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Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VP0033 protoporphyrinogen oxidasechromosome 1 CDS32649 528 + 0.405303
VP0035 ketol-acid reductoisomerasechromosome 1 CDS40094 1485 + 0.457239
VP0095 ubiquinone/menaquinone biosynthesis methlytransferase UbiEchromosome 1 CDS104921 780 + 0.482051
VP0104 delta-aminolevulinic acid dehydratasechromosome 1 CDS110893 1062 + 0.481168
VP0115 oxygen-independent coproporphyrinogen III oxidasechromosome 1 CDS120797 1392 + 0.465517
VP0181 DNA/pantothenate metabolism flavoproteinchromosome 1 CDS194074 1200 - 0.499167
VP0190 lipopolysaccharide core biosynthesis protein KdtBchromosome 1 CDS201797 504 + 0.434524
VP0205 putative glutamate-1-semialdehyde 2,1-aminomutasechromosome 1 CDS215353 1320 + 0.415152
VP0247 S-adenosylmethionine:2-demethylmenaquinonemethyl transferasechromosome 1 CDS258443 513 - 0.48538
VP0248 1,4-dihydroxy-2-naphthoate octaprenyltransferasechromosome 1 CDS259032 918 - 0.466231
VP0291 uroporphyrin-III C-methyltransferasechromosome 1 CDS288295 915 + 0.460109
VP0292 sulfate adenylate transferase, subunit 2chromosome 1 CDS289269 909 + 0.469747
VP0315 3-octaprenyl-4-hydroxybenzoate carboxy-lyasechromosome 1 CDS310908 639 + 0.517997
VP0316 thiamin ABC transporter, periplasmic thiamin-binding proteinchromosome 1 CDS311793 993 + 0.466264
VP0318 putative thiamine ABC transporter, ATP-binding proteinchromosome 1 CDS314414 705 + 0.512057
VP0327 octaprenyl-diphosphate synthasechromosome 1 CDS322076 1002 - 0.464072
VP0333 dihydrofolate reductasechromosome 1 CDS326753 483 + 0.430642
VP0337 pyridoxal phosphate biosynthetic protein PdxAchromosome 1 CDS329391 999 - 0.45045
VP0352 acetolactate synthase III, large subunitchromosome 1 CDS348280 1725 + 0.474203
VP0411 putative dihydroneopterin aldolase FolBchromosome 1 CDS411645 360 + 0.444444
VP0412 putative2-amino-4-hydroxy-6-hydroxymethyldihydro pteridinepyrophosphokinasechromosome 1 CDS412001 483 + 0.455487
VP0478 putative cobalamin biosynthesis protein CbiBchromosome 1 CDS484414 954 - 0.47065
VP0492 S-adenosylmethionine:2-demethylmenaquinonemethyl transferasechromosome 1 CDS506970 483 + 0.443064
VP0533 riboflavin kinase/FMN adenylyltransferasechromosome 1 CDS548571 936 + 0.467949
VP0630 putative aminotransferase proteinchromosome 1 CDS659821 1332 + 0.472973
VP0662 conserved hypothetical proteinchromosome 1 CDS690872 1560 + 0.466026
VP0679 riboflavin-specific deaminasechromosome 1 CDS712214 1125 + 0.492444
VP0680 riboflavin synthase, alpha subunitchromosome 1 CDS713351 654 + 0.464832
VP0681 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase IIchromosome 1 CDS714174 1110 + 0.501802
VP0682 riboflavin synthase, beta subunitchromosome 1 CDS715453 471 + 0.43949
VP0684 thiamin-monophosphate kinasechromosome 1 CDS716474 966 + 0.469979
VP0686 1-deoxyxylulose-5-phosphate synthasechromosome 1 CDS718060 1866 - 0.463558
VP0687 geranyltranstransferasechromosome 1 CDS719946 885 - 0.456497
VP0716 lipoic acid synthetasechromosome 1 CDS751480 966 - 0.480331
VP0717 lipoate-protein ligase Bchromosome 1 CDS752442 663 - 0.46003
VP0735 VisC-related proteinchromosome 1 CDS770653 1176 + 0.463435
VP0742 glutamyl-tRNA reductasechromosome 1 CDS779261 1257 + 0.475736
VP0823 ferrochelatasechromosome 1 CDS852016 963 + 0.449637
VP0879 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolasechromosome 1 CDS911485 861 - 0.490128
VP0928 menaquinone-specific isochorismate synthasechromosome 1 CDS965361 1308 + 0.478593
VP0929 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate synthase/2-oxoglutarate decarboxylasechromosome 1 CDS966665 1716 + 0.481352
VP0931 naphthoate synthasechromosome 1 CDS969176 879 + 0.491468
VP0932 o-succinylbenzoate-CoA synthasechromosome 1 CDS970181 990 + 0.482828
VP1040 hypothetical proteinchromosome 1 CDS1090875 969 - 0.498452
VP1063 quinolinate synthetase Achromosome 1 CDS1112486 1062 + 0.458569
VP1085 hypothetical proteinchromosome 1 CDS1139773 1179 + 0.419847
VP1112 adenosylmethionine-8-amino-7-oxononanoateaminotr ansferasechromosome 1 CDS1171422 1281 - 0.480874
VP1113 biotin synthasechromosome 1 CDS1172832 1053 + 0.481481
VP1114 8-amino-7-oxononanoate synthasechromosome 1 CDS1173835 1188 + 0.481481
VP1116 dethiobiotin synthetasechromosome 1 CDS1175804 708 + 0.461864
VP1247 phosphoserine aminotransferasechromosome 1 CDS1314743 1104 + 0.457428
VP1304 nicotinate-nucleotide-dimethylbenzimidazolephosphoribosyltransferasechromosome 1 CDS1385025 1044 + 0.470307
VP1305 cobalamin (5'-phosphate) synthasechromosome 1 CDS1386068 798 + 0.47619
VP1306 cobinamide kinase/cobinamide phosphate guanylyltransferasechromosome 1 CDS1386862 534 + 0.453184
VP1311 putative vitamin B12 ABC transporter, permease protein BtuCchromosome 1 CDS1391406 1098 + 0.470856
VP1312 putative vitamin B12 ABC transporter, ATP-binding protein BtuDchromosome 1 CDS1392490 768 + 0.481771
VP1366 putative pyridoxine kinasechromosome 1 CDS1451987 852 + 0.465962
VP1480 riboflavin synthase, alpha chainchromosome 1 CDS1592540 612 + 0.457516
VP1496 molybdopterin biosynthesis MoeA proteinchromosome 1 CDS1605817 1779 - 0.483418
VP1497 molybdopterin-guanine dinucleotide biosynthesis protein Achromosome 1 CDS1607592 624 - 0.445513
VP1499 ABC transporter, permease proteinchromosome 1 CDS1608927 699 - 0.48784
VP1501 conserved hypothetical proteinchromosome 1 CDS1609632 819 - 0.456654
VP1619 uroporphyrin-III C-methyltransferasechromosome 1 CDS1718023 921 - 0.456026
VP1875 para-aminobenzoate synthase, component Ichromosome 1 CDS1957408 1365 + 0.477656
VP1883 putative 6-pyruvoyl tetrahydrobiopterin synthasechromosome 1 CDS1967851 414 - 0.405797
VP1921 GTP cyclohydrolase IIchromosome 1 CDS2007313 597 - 0.443886
VP1933 3-demethylubiquinone-9 3-methyltransferasechromosome 1 CDS2019868 708 + 0.457627
VP1956 anthranilate synthase, alpha subunitchromosome 1 CDS2047039 1578 + 0.468314
VP1957 anthranilate synthase, beta subunitchromosome 1 CDS2048622 591 + 0.477157
VP2003 hypothetical proteinchromosome 1 CDS2097690 675 - 0.459259
VP2051 4-amino-4-deoxychorismate lyasechromosome 1 CDS2151755 819 - 0.444444
VP2065 cob(I)alamin adenosyltransferasechromosome 1 CDS2167020 606 + 0.460396
VP2092 molybdenum cofactor biosynthesis protein Echromosome 1 CDS2201470 456 - 0.495614
VP2093 molybdenum cofactor biosynthesis protein Dchromosome 1 CDS2201927 258 - 0.531008
VP2094 molybdenum cofactor biosynthesis protein Cchromosome 1 CDS2202181 480 - 0.458333
VP2095 molybdenum cofactor biosynthesis protein Bchromosome 1 CDS2202687 513 - 0.45614
VP2096 molybdenum cofactor biosynthesis protein Achromosome 1 CDS2203302 1005 - 0.459701
VP2188 folylpolyglutamate synthase/dihydrofolate synthasechromosome 1 CDS2297178 1263 - 0.486144
VP2193 erythronate-4-phosphate dehydrogenasechromosome 1 CDS2305832 1134 - 0.462963
VP2329 efflux pump component MtrFchromosome 1 CDS2440260 1587 - 0.47322
VP2345 thiamin biosynthesis lipoprotein ApbEchromosome 1 CDS2456384 1005 - 0.456716
VP2363 2-dehydropantoate 2-reductasechromosome 1 CDS2472159 894 + 0.464206
VP2368 HesA/MoeB/ThiF family proteinchromosome 1 CDS2476586 810 - 0.475309
VP2462 dihydropteroate synthasechromosome 1 CDS2584608 831 - 0.445247
VP2475 glutamate-1-semialdehyde 2,1-aminomutasechromosome 1 CDS2601197 1296 + 0.484568
VP2505 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinasechromosome 1 CDS2644396 486 + 0.469136
VP2506 3-methyl-2-oxobutanoate hydroxymethyltransferasechromosome 1 CDS2644906 795 + 0.467925
VP2507 pantoate-beta-alanine ligasechromosome 1 CDS2645712 906 + 0.465784
VP2522 NadCchromosome 1 CDS2662085 888 + 0.469595
VP2527 dephospho-CoA kinasechromosome 1 CDS2667531 615 + 0.426016
VP2539 glutamate-cysteine ligasechromosome 1 CDS2676857 1569 - 0.453155
VP2569 pyridoxal phosphate biosynthetic protein PdxJchromosome 1 CDS2715754 732 - 0.47541
VP2580 L-aspartate oxidasechromosome 1 CDS2725146 1623 + 0.497227
VP2586 VisC proteinchromosome 1 CDS2730216 1209 - 0.512821
VP2587 UbiH proteinchromosome 1 CDS2731474 1179 - 0.477523
VP2591 putative 5-formyltetrahydrofolate cyclo-ligase-family proteinchromosome 1 CDS2734009 609 + 0.466338
VP2593 D-3-phosphoglycerate dehydrogenasechromosome 1 CDS2735608 1233 + 0.46472
VP2606 S-adenosylmethionine synthasechromosome 1 CDS2750446 1155 + 0.465801
VP2611 glutathione synthetasechromosome 1 CDS2754992 951 + 0.472135
VP2622 putative oxygen-independent coproporphyrinogen III oxidasechromosome 1 CDS2763173 1179 + 0.486005
VP2678 2-hydroxyacid dehydrogenase family proteinchromosome 1 CDS2826025 963 - 0.504673
VP2720 phosphoadenosine phosphosulfate reductasechromosome 1 CDS2887678 780 - 0.435897
VP2798 para-aminobenzoate synthase glutamine amidotransferase, component IIchromosome 1 CDS2962827 588 - 0.477891
VP2914 D-isomer specific 2-hydroxyacid dehydrogenase family proteinchromosome 1 CDS3102581 924 + 0.457792
VP2916 uroporphyrinogen decarboxylasechromosome 1 CDS3104302 1068 - 0.476592
VP2931 BirA bifunctional proteinchromosome 1 CDS3123712 966 - 0.452381
VP2938 putative vitamin B12 receptorchromosome 1 CDS3141020 1875 - 0.4496
VP2948 4-hydroxybenzoate octaprenyltransferasechromosome 1 CDS3153169 855 - 0.467836
VP2949 chorismate-pyruvate lyasechromosome 1 CDS3154024 552 - 0.46558
VP2988 porphobilinogen deaminasechromosome 1 CDS3188037 939 + 0.518637
VP2989 uroporphyrinogen-III synthasechromosome 1 CDS3188978 729 + 0.495199
VP2990 putative uroporphyrin-III C-methyltransferasechromosome 1 CDS3189724 1212 + 0.445545
VP2991 HemY proteinchromosome 1 CDS3190935 1182 + 0.441624
VP2995 NAD(P)H-flavin reductasechromosome 1 CDS3198889 714 - 0.452381
VP2997 conserved hypothetical proteinchromosome 1 CDS3199883 1854 - 0.477346
VP3022 ThiH proteinchromosome 1 CDS3226050 1128 - 0.475177
VP3023 ThiG proteinchromosome 1 CDS3227193 768 - 0.497396
VP3024 ThiS proteinchromosome 1 CDS3227966 204 - 0.47549
VP3025 ThiF proteinchromosome 1 CDS3228249 783 - 0.476373
VP3026 thiamin-phosphate pyrophosphorylasechromosome 1 CDS3229021 1335 - 0.448689
VP3027 thiamin biosynthesis protein ThiCchromosome 1 CDS3230355 1941 - 0.476558
VP3034 coproporphyrinogen III oxidase, aerobicchromosome 1 CDS3242007 918 - 0.494553
VP3058 acetolactate synthase II, large subunitchromosome 1 CDS3265147 1647 + 0.51609
VP3060 branched-chain amino acid amiotransferasechromosome 1 CDS3267101 939 + 0.499468
VPA0006 GTP cyclohydrolase IIchromosome 2 CDS6422 1107 + 0.495935
VPA0130 putative thiamine monophosphate syntasechromosome 2 CDS122277 615 - 0.491057
VPA0131 putative hydroxyethylthiazole kinasechromosome 2 CDS122955 792 - 0.512626
VPA0136 phosphomethylpyrimidine kinasechromosome 2 CDS126960 858 - 0.5
VPA0144 D-lactate dehydrogenasechromosome 2 CDS139365 996 - 0.452811
VPA0173 ribosomal protein S6 modification proteinchromosome 2 CDS169104 906 - 0.460265
VPA0309 nicotinate phosphoribosyltransferasechromosome 2 CDS308809 1311 + 0.466056
VPA0395 hypothetical proteinchromosome 2 CDS393379 711 - 0.45007
VPA0412 NH(3)-dependent NAD(+) synthetasechromosome 2 CDS407395 831 - 0.470517
VPA0413 conserved hypothetical proteinchromosome 2 CDS408448 534 + 0.417603
VPA0427 coproporphyrinogen oxidase homolog PhuWchromosome 2 CDS418955 1371 + 0.482859
VPA0504 putative kinasechromosome 2 CDS510571 735 + 0.455782
VPA0577 pterin-4-alpha-carbinolamine dehydratasechromosome 2 CDS577226 339 + 0.433628
VPA0691 putative riboflavin deaminasechromosome 2 CDS717371 426 + 0.485915
VPA0711 aminotransferase, class IIchromosome 2 CDS738424 1182 - 0.463621
VPA0932 cobyric acid synthasechromosome 2 CDS964852 1452 - 0.444904
VPA0984 uroporphyrin-III C-methyltransferasechromosome 2 CDS1029561 759 - 0.491436
VPA0990 hypothetical proteinchromosome 2 CDS1036141 1221 + 0.469287
VPA1064 putative siroheme synthasechromosome 2 CDS1120748 906 - 0.475717
VPA1080 putative membrane transport proteinchromosome 2 CDS1139833 732 - 0.463115
VPA1147 putative phenylacetate-CoA ligasechromosome 2 CDS1210188 1203 - 0.495428
VPA1169 GTP cyclohydrolasechromosome 2 CDS1235907 654 - 0.477064
VPA1170 molybdopterin biosynthesis MoeA proteinchromosome 2 CDS1236849 1236 + 0.481392
VPA1171 molybdopterin biosynthesis MoeB proteinchromosome 2 CDS1238094 750 + 0.498667
VPA1250 3,4-dihydroxy-2-butanone 4-phosphate synthasechromosome 2 CDS1323888 657 + 0.491629
VPA1300 conserved hypothetical proteinchromosome 2 CDS1376555 534 + 0.447566
VPA1436 iron(III) ABC transporter, ATP-binding proteinchromosome 2 CDS1514068 786 + 0.501272
VPA1510 2-amino-3-ketobutyrate coenzyme A ligasechromosome 2 CDS1613995 1194 - 0.481575
VPA1632 putative pyridoxine kinasechromosome 2 CDS1735333 870 - 0.489655
VPA1652 ATP-binding component of citrate-dependent iron(III) transport proteinchromosome 2 CDS1767656 765 - 0.482353
VPA1730 pyridoxamine 5'-phosphate oxidasechromosome 2 CDS1848497 636 - 0.463836