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2024-05-26 01:51:03

Gene list

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COG category: Carbohydrate transport and metabolism
Genomic element: chromosome 1

Number of genes found: 193

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Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RSP_0008 possible transporter, DME family, DMT superfamilychromosome 1 CDS1710871 966 + 0.719462
NA RSP_1405 ROK family proteinchromosome 1 CDS3181832 888 + 0.73536
NA RSP_1371 putative 2-dehydro-3-deoxygalactonokinasechromosome 1 CDS3147672 924 + 0.734848
NA RSP_0988 ABC sugar transporter, ATPase subunitchromosome 1 CDS2745768 777 - 0.671815
NA RSP_0561 Transaldolasechromosome 1 CDS2299128 660 + 0.64697
NA RSP_1600 possible transporter, DME family, DMT superfamilychromosome 1 CDS197835 933 + 0.697749
NA RSP_1277 conserved hypothetical proteinchromosome 1 CDS3044759 1308 - 0.707187
NA RSP_1848 Pyruvate kinasechromosome 1 CDS439615 1527 - 0.720367
NA RSP_0364 possible transporter, RarD family, DMT superfamilychromosome 1 CDS2093252 924 + 0.695887
NA RSP_2673 Glucose dehydrogenasechromosome 1 CDS1314937 2346 - 0.687127
NA RSP_1685 PTS system, IIA componentchromosome 1 CDS276308 399 + 0.674185
NA RSP_0828 Major facilitator superfamily (MFS) transporterchromosome 1 CDS2572791 1158 + 0.763385
NA RSP_1244 putative IolE, Sugar phosphate isomerases/epimeraseschromosome 1 CDS3013043 1059 + 0.673277
NA RSP_0651 Putative inositol monophosphatase proteinchromosome 1 CDS2389367 795 - 0.710692
NA RSP_2365 ABC sugar (ribose) transporter, periplasmic substrate-binding subunitchromosome 1 CDS991973 963 + 0.653167
NA RSP_2367 ABC sugar (ribose) transporter, inner membrane subunitchromosome 1 CDS995642 978 + 0.689162
NA RSP_0476 L-fuculose-phosphate aldolasechromosome 1 CDS2210875 645 - 0.685271
NA RSP_2492 Possible transporter, RhaT family, DMT superfamilychromosome 1 CDS1134574 885 - 0.703955
NA RSP_0970 Putative citrate lyase beta chainchromosome 1 CDS2732163 858 + 0.680653
NA RSP_0520 NAD-dependent dehydratase/epimerasechromosome 1 CDS2258269 1107 - 0.695574
NA RSP_2249 multidrug (Tetracycline) efflux pump, Major facilitator superfamily (MFS)chromosome 1 CDS865112 1221 - 0.71335
NA RSP_0158 cellulose synthase-like proteinchromosome 1 CDS1872975 1884 - 0.696391
NA RSP_0917 Inositol monophosphatasechromosome 1 CDS2667539 777 + 0.725869
NA RSP_1554 Possible polysaccharide deacetylasechromosome 1 CDS144267 1416 - 0.683616
NA RSP_1774 Putative glucose dehydrogenase Bchromosome 1 CDS357884 1179 + 0.705683
NA RSP_1449 Putative transcriptional regulator of sugar metabolismchromosome 1 CDS31726 771 - 0.687419
NA RSP_2446 Putative trehalose synthasechromosome 1 CDS1080739 3309 + 0.67815
NA RSP_1390 Putative transporter, DMT superfamilychromosome 1 CDS3166804 882 + 0.713152
NA RSP_2187 multidrug efflux pump, Major Facilitator Superfamily ( MFS)chromosome 1 CDS794280 1221 - 0.685504
NA RSP_0654 possible transporter, DMT superfamilychromosome 1 CDS2392540 912 - 0.702851
NA RSP_1610 altronate hydrolasechromosome 1 CDS206353 1503 + 0.687292
NA RSP_1771 beta subunit of citrate lyasechromosome 1 CDS354743 957 + 0.659352
NA RSP_1781 putative membrane-anchored oxidoreductase, similar to L-sorbosone dehydrogenasechromosome 1 CDS365720 1458 - 0.709877
NA RSP_0642 possible transporter, RhaT family, DMT superfamilychromosome 1 CDS2380915 945 + 0.716402
NA RSP_0006 possible transporter, DMT superfamilychromosome 1 CDS1708728 888 + 0.682432
NA RSP_1029 possible Histidine triad (HIT) proteinchromosome 1 CDS2793413 396 - 0.651515
NA RSP_2726 multidrug/metabolite efflux pump, Major facilitator superfamily (MFS)chromosome 1 CDS1376415 1221 - 0.707617
NA RSP_0485 TRAP-T family transporter, DctQ (4 TMs) subunitchromosome 1 CDS2219959 546 - 0.677656
NA RSP_0484 TRAP-T family transporter, DctM (12 TMs) subunitchromosome 1 CDS2218676 1281 - 0.672131
NA RSP_1609 Putative altronate dehydrogenasechromosome 1 CDS205256 1101 + 0.703906
NA RSP_1442 ABC sugar transporter, periplasmic sugar-binding proteinchromosome 1 CDS24295 1257 + 0.649165
NA RSP_0278 putative light-harvesting 1 (B870) complex assembly protein PucCchromosome 1 CDS2003035 1284 - 0.711838
NA RSP_0519 NAD-dependent epimerase/dehydratasechromosome 1 CDS2256254 2019 - 0.706786
NA RSP_2445 putative Alpha amylasechromosome 1 CDS1078538 2205 + 0.64898
NA RSP_2663 ABC sugar (glycerol) transporter, periplasmic binding proteinchromosome 1 CDS1305874 1725 - 0.661449
NA RSP_0404 fructose-1,6-bisphosphatase, GlpX-likechromosome 1 CDS2136288 966 + 0.694617
NA RSP_0160 NAD-dependent epimerase/dehydratase family proteinchromosome 1 CDS1875827 1038 - 0.662813
NA RSP_0331 hypothetical proteinchromosome 1 CDS2057613 1839 - 0.741707
NA RSP_1604 TRAP-T family transporter, DctQ (4TMs) subunitchromosome 1 CDS200870 486 - 0.68107
NA RSP_1445 ABC sugar transporter, ATPase subunitchromosome 1 CDS27395 1104 + 0.677536
NA RSP_2368 ABC sugar (ribose) transporter, inner membrane subunitchromosome 1 CDS994634 1005 + 0.701493
NA RSP_0990 ABC sugar transporter, periplasmic sugar binding subunitchromosome 1 CDS2747810 1023 - 0.680352
NA RSP_1605 TRAP-T family transporter, periplasmic binding protein, DctPchromosome 1 CDS201425 975 - 0.645128
NA RSP_1370 Alpha amylase, catalytic subdomainchromosome 1 CDS3148553 1611 - 0.677219
NA RSP_2666 ABC sugar (glycerol) transporter, inner membrane subunitchromosome 1 CDS1308775 873 - 0.62772
NA RSP_2366 ABC sugar (ribose) transporter, fused ATPase subunitschromosome 1 CDS993119 1509 + 0.6945
NA RSP_1247 ABC sugar transporter, ATPase subunitchromosome 1 CDS3015240 1500 + 0.693333
NA RSP_2238 multidrug efflux pump, Major facilitator superfamily (MFS)chromosome 1 CDS854906 1524 + 0.669948
NA RSP_2306 putative HAD superfamily proteinchromosome 1 CDS928696 894 - 0.683445
NA RSP_2669 ABC sugar (glycerol) transporter, ATPase subunitchromosome 1 CDS1310743 1089 - 0.69697
NA RSP_2740 putative Glucose/sorbosone dehydrogenasechromosome 1 CDS1390370 1257 + 0.655529
NA RSP_1385 conserved hypothetical proteinchromosome 1 CDS3163866 840 - 0.721429
NA RSP_0989 ABC sugar transporter, inner membrane subunitchromosome 1 CDS2746544 1092 - 0.668498
NA RSP_0945 Major facilitator superfamily (MFS) transporterchromosome 1 CDS2696305 1626 - 0.713407
NA RSP_0566 possible transporter, DMT superfamilychromosome 1 CDS2303064 837 - 0.706093
NA RSP_0918 conserved hypothetical proteinchromosome 1 CDS2668563 198 - 0.656566
NA RSP_0858 Putative transporter, RhaT family, DMT superfamilychromosome 1 CDS2608190 954 - 0.678197
NA RSP_0513 hypothetical proteinchromosome 1 CDS2249199 1428 - 0.691877
NA RSP_1441 regulatory protein, GntR familychromosome 1 CDS23029 1149 + 0.698869
NA RSP_2941 Putative Glycoside hydrolasechromosome 1 CDS1620482 1014 - 0.732742
NA RSP_1089 sugar/cation symporter, GPH familychromosome 1 CDS2846135 1206 - 0.726368
NA RSP_1450 Inositol monophosphatase family proteinchromosome 1 CDS32769 795 + 0.686792
NA RSP_2967 Probable transporter, Major facilitator superfamily (MFS)chromosome 1 CDS1651098 1137 - 0.728232
NA RSP_1444 ABC sugar transporter, inner membrane subunitchromosome 1 CDS26527 849 + 0.634865
NA RSP_2851 multidrug (bicyclomycin) efflux pump, Major facilitator superfamily (MFS)chromosome 1 CDS1452186 1218 + 0.702791
NA RSP_1443 ABC sugar transporter, inner membrane subunitchromosome 1 CDS25619 912 + 0.628289
NA RSP_0773 mannonate dehydratasechromosome 1 CDS2514134 1221 - 0.703522
NA RSP_2053 Possible transporter, RarD family, DMT superfamilychromosome 1 CDS647337 906 + 0.634658
NA RSP_1151 NADH-ubiquinone oxidoreductasechromosome 1 CDS2914945 987 - 0.688956
NA RSP_1602 TRAP-T family transporter, DctM (12TMs) subunitchromosome 1 CDS199574 1272 - 0.665881
NA RSP_0176 Dihydroxyacid dehydratase/phosphogluconate dehydratasechromosome 1 CDS1892163 1782 - 0.694164
NA RSP_6150 ABC sugar (ribose) transporter, inner membrane subunitchromosome 1 CDS3016736 993 + 0.672709
NA RSP_2257 putative Fructokinasechromosome 1 CDS874848 921 - 0.732899
NA RSP_0603 hypothetical proteinchromosome 1 CDS2343972 579 + 0.723661
NA RSP_2449 Putative glycosyl hydrolasechromosome 1 CDS1086227 2067 + 0.670537
NA RSP_2452 Alpha amylase, catalytic domain/subdomainchromosome 1 CDS1091879 2616 + 0.694572
NA RSP_0229 multidrug efflux pump, MF Superfamilychromosome 1 CDS1945888 1599 + 0.718574
NA RSP_0877 Putative transporter, RhaT family, DMT superfamilychromosome 1 CDS2627234 885 - 0.701695
NA RSP_2970 Transporter, Major facilitator superfamily (MFS)chromosome 1 CDS1654702 1257 - 0.669849
NA RSP_2451 putative 4-alpha-glucanotransferasechromosome 1 CDS1090065 1818 + 0.709571
NA RSP_2665 ABC sugar (glycerol) transporter, inner membrane subunitchromosome 1 CDS1307934 804 - 0.625622
NA RSP_1863 Phosphoglucomutase/phosphomannomutasechromosome 1 CDS461572 1344 + 0.712798
NA RSP_0514 dTDP-glucose 4,6-dehydratase proteinchromosome 1 CDS2250807 1014 - 0.704142
NA RSP_1842 possible transporter, DME family, DMT superfamilychromosome 1 CDS432971 906 - 0.69426
NA RSP_2370 putative sugar kinasechromosome 1 CDS996635 951 + 0.697161
NA RSP_2667 ABC sugar (glycerol) transporter, ATPase subunitchromosome 1 CDS1309647 1086 - 0.678637
NA RSP_1711 Possible transporter, RhaT family, DMT superfamilychromosome 1 CDS302284 927 + 0.702265
NA RSP_0991 Putative transcriptional regulator, ROK familychromosome 1 CDS2749030 1224 + 0.723856
NA RSP_6060 conserved hypothetical proteinchromosome 1 CDS1204363 258 - 0.627907
NA RSP_0987 Putative transporter, RarD family, DMT superfamilychromosome 1 CDS2744222 957 + 0.681296
NA RSP_1178 ABC sugar (xylose) transporter, ATPase subunitchromosome 1 CDS2946423 783 - 0.655172
NA RSP_2450 putative Alpha-amylasechromosome 1 CDS1088290 1779 + 0.687465
NA RSP_1372 Major facilitator superfamily (MFS) transporterchromosome 1 CDS3150624 1239 + 0.675545
NA RSP_2373 Putative Transporter, Major facilitator superfamily (MFS)chromosome 1 CDS1000011 1170 + 0.745299
NA RSP_2035 hypothetical proteinchromosome 1 CDS631702 705 - 0.652482
NA RSP_1030 putative pfkB family carbohydrate kinasechromosome 1 CDS2794267 993 - 0.686808
NA RSP_1893 Inositol monophosphatase family proteinchromosome 1 CDS489686 801 + 0.709114
NA RSP_0026 Probable epimerase/dehydratasechromosome 1 CDS1727111 1056 - 0.660985
NA RSP_2874 Putative Beta-glucosidase Achromosome 1 CDS1543355 1323 + 0.697657
NA RSP_1686 Putative Phosphocarrier HPr proteinchromosome 1 CDS276703 270 + 0.659259
NA RSP_0636 TRAP-T family transporter, DctP (periplasmic binding) subunitchromosome 1 CDS2373108 1125 - 0.662222
NA RSP_0487 TRAP-T family transporter, DctP (periplasmic binding) subunitchromosome 1 CDS2220567 978 - 0.630879
NA RSP_1649 Possible transporter, DMT superfamilychromosome 1 CDS242832 873 - 0.67354
NA RSP_0490 carbohydrate kinasechromosome 1 CDS2223935 753 + 0.733068
NA RSP_6216 putative carbohydrate kinase, PfkB familychromosome 1 CDS1441320 915 + 0.759563
NA RSP_1249 ABC ribose transporter, periplasmic solute-binding proteinchromosome 1 CDS3017747 963 + 0.667705
NA RSP_1446 Putative sugar kinasechromosome 1 CDS28495 942 + 0.738854
NA RSP_0937 Alpha amylase, catalytic subdomainchromosome 1 CDS2687731 1647 + 0.666059
NA RSP_1373 Major facilitator superfamily (MFS) transporterchromosome 1 CDS3151955 1173 + 0.722933
NA RSP_2732 Major facilitator superfamily (MFS) transporterchromosome 1 CDS1381791 1164 + 0.748282
NA RSP_0157 Beta-mannanasechromosome 1 CDS1872062 900 - 0.677778
NA RSP_0290 Light-harvesting 1 (B870) complex assemblychromosome 1 CDS2019205 1440 + 0.702083
PtsN RSP_1158 PTS IIA-like nitrogen-regulatory protein PtsNchromosome 1 CDS2920487 465 + 0.668817
aglE RSP_2873 ABC alpha-glucoside transporter, perplasmic substrate-binding proteinchromosome 1 CDS1541664 1353 - 0.665928
aglF RSP_2872 ABC alpha-glucoside transporter, inner membrane subunit AglFchromosome 1 CDS1540595 993 - 0.644512
aglG RSP_2871 ABC alpha-glucoside transporter, inner membrane subunit AglGchromosome 1 CDS1539474 1122 - 0.682709
aglK RSP_2870 ABC alpha-glucoside transporter, ATPase subunit AglKchromosome 1 CDS1538340 1110 - 0.684685
aqpZ RSP_2782 aquaporin z, Major Intrinsic Protein (MIP) Familychromosome 1 CDS1430166 732 - 0.688525
bchF RSP_0284 2-vinyl bacteriochlorophyllide hydratasechromosome 1 CDS2010530 483 + 0.664596
cbbE RSP_2864 Pentose-5-phosphate-3-epimerasechromosome 1 CDS1436969 711 + 0.673699
cbbF1 RSP_1285 Fructose-1,6-bisphosphatase Ichromosome 1 CDS3052466 1002 - 0.677645
cbbI RSP_0359 Ribose-5-phosphate isomerasechromosome 1 CDS2090051 789 - 0.674271
cbbJ RSP_1947 Triosephosphate isomerasechromosome 1 CDS545193 738 - 0.712737
cbbL RSP_1282 Ribulose bisphosphate carboxylase, large subunit, form Ichromosome 1 CDS3048909 1461 - 0.654346
cfxA RSP_1283 Fructose-bisphosphate aldolase Ichromosome 1 CDS3050384 1080 - 0.668519
dctM RSP_0912 TRAP-T family C4-dicarboxylate transporter, DctM (12TMs) subunitchromosome 1 CDS2661465 1326 + 0.659125
dctP RSP_0910 TRAP-T family transporter, C4-dicarboxylate-binding protein DctPchromosome 1 CDS2659690 1005 + 0.654726
dctQ RSP_0911 TRAP-T family C4-dicarboxylate transporter, DctQ (4TMs) subunitchromosome 1 CDS2660780 684 + 0.654971
deoB RSP_1596 probable phosphopentomutase proteinchromosome 1 CDS191024 1197 + 0.732665
eda RSP_2645 KDPG/KHG bifunctional aldolasechromosome 1 CDS1286934 639 - 0.740219
eno RSP_2491 Enolasechromosome 1 CDS1133262 1278 - 0.654147
exoK RSP_2550 endo-beta-1,3-1,4-glycanase proteinchromosome 1 CDS1193730 783 - 0.650064
fbaB RSP_4045 Fructose-bisphosphate aldolase class Ichromosome 1 CDS1126182 930 - 0.665591
fruA RSP_1788 PTS system, fructose-specificIIBC componentchromosome 1 CDS374309 1746 + 0.721649
fruB RSP_1786 Multi-component fructose specific PTS system protein, (PtsI, Hpr, and IIA domains)chromosome 1 CDS370813 2517 + 0.728248
fruK RSP_1787 Probable 1-phosphofructokinasechromosome 1 CDS373326 987 + 0.748734
fucA RSP_2364 L-fuculose phosphate aldolase (Class II)chromosome 1 CDS991251 657 + 0.659056
gapB RSP_2959 Glyceraldehyde 3-phosphate dehydrogenase B (GAPDH)chromosome 1 CDS1641318 1002 + 0.650699
glgA RSP_2885 glycogen synthasechromosome 1 CDS1558491 1455 - 0.695533
glgB1 RSP_2448 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme)chromosome 1 CDS1084044 2187 + 0.67947
glgC RSP_2227 ADP-glucose pyrophosphorylasechromosome 1 CDS842397 1230 - 0.722764
glgC RSP_2886 ADP-glucose pyrophosphorylasechromosome 1 CDS1560042 1272 - 0.647799
glgP RSP_2887 glycogen phosphorylasechromosome 1 CDS1562080 2406 - 0.665835
glgX RSP_2226 Glycosidasechromosome 1 CDS840316 2085 - 0.67482
glgX RSP_2884 glycogen debranching enzymechromosome 1 CDS1556380 2115 - 0.686525
glk RSP_2875 putative glucokinasechromosome 1 CDS1544696 954 + 0.730608
glpR RSP_0457 probable glycerol-3-phosphate regulon repressorchromosome 1 CDS2189977 780 + 0.671795
gpmI RSP_0934 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independentchromosome 1 CDS2683669 1521 - 0.693623
kduI RSP_0482 4-deoxy-L-threo-5-hexosulose-uronateketol-isomer asechromosome 1 CDS2217400 825 - 0.676364
manB RSP_0835 phosphomannomutasechromosome 1 CDS2580781 1377 + 0.713145
mtlK RSP_0096 Mannitol dehydrogenasechromosome 1 CDS1806098 1434 + 0.688982
nagA RSP_1296 putative N-acetylglucosamine-6-phosphate deacetylasechromosome 1 CDS3066683 1134 - 0.737213
ostB RSP_0949 putative trehalose-6-phosphate phosphatasechromosome 1 CDS2701825 783 - 0.715198
otsA RSP_0948 probable OtsA trehalose-6-phosphate synthasechromosome 1 CDS2700416 1413 - 0.672328
pfkB RSP_2334 carbohydrate kinase, PfkBchromosome 1 CDS961677 945 - 0.756614
pgi RSP_2736 Phosphoglucose isomerase (PGI) glucose-6-phosphate isomerasechromosome 1 CDS1385352 1602 + 0.691011
pgk RSP_4044 Phosphoglycerate kinasechromosome 1 CDS1127213 1194 - 0.686767
pgl RSP_2735 6-phosphogluconolactonasechromosome 1 CDS1384661 672 + 0.712798
pgm RSP_2883 Probable phosphoglucomutase/phosphomannomutasechromosome 1 CDS1554749 1635 - 0.677676
ppdK RSP_1859 Pyruvate phosphate dikinasechromosome 1 CDS456004 2547 + 0.714959
ppnk RSP_0825 probable inorganic polyphosphate/ATP-NAD kinasechromosome 1 CDS2569697 765 + 0.701961
pucC RSP_0315 Light-harvesting 1 (B870) complex assemblychromosome 1 CDS2043280 1380 + 0.692029
pykA RSP_1766 Pyruvate kinasechromosome 1 CDS348871 1446 - 0.700553
rbsK RSP_1216 putative RbsK, Carbohydrate kinase, ribokinase familychromosome 1 CDS2986521 855 - 0.71345
smoE RSP_0091 ABC sorbitol/mannitol transporter, periplasmic binding proteinchromosome 1 CDS1801150 1311 + 0.659802
smoF RSP_0092 ABC sorbitol/mannitol transporter, inner membrane subunitchromosome 1 CDS1802562 873 + 0.63803
smoG RSP_0093 ABC sorbitol/mannitol transporter, inner membrane subunitchromosome 1 CDS1803436 831 + 0.641396
smoK RSP_0094 ABC sorbitol/mannitol transporter, ATPase subunitchromosome 1 CDS1804274 999 + 0.668669
sqdB RSP_2569 sulfolipid (UDP-sulfoquinovose) biosynthesis proteinchromosome 1 CDS1213444 1215 - 0.649383
sqdC RSP_2567 putative sulfolipid biosynthesis proteinchromosome 1 CDS1211807 816 - 0.716912
suhB RSP_2169 Inositol monophosphatase family proteinchromosome 1 CDS772736 786 - 0.704835
tktA RSP_2956 Transketolasechromosome 1 CDS1637358 2019 + 0.686974
uxaC RSP_0488 putative glucuronate isomerasechromosome 1 CDS2221570 1407 - 0.692964
uxuB RSP_0480 D-mannonate oxidoreductasechromosome 1 CDS2215294 1368 - 0.710526
wcaG RSP_1188 Nucleotide sugar epimerase/dehydratasechromosome 1 CDS2961261 1887 - 0.667727
xanB RSP_0834 mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferasechromosome 1 CDS2579330 1455 + 0.707904
xoxF RSP_2578 putative pqq dehydrogenase proteinchromosome 1 CDS1222240 1803 + 0.6467
xylA RSP_1176 Xylose isomerasechromosome 1 CDS2943689 1302 - 0.658218
xylB RSP_1177 Xylulose kinasechromosome 1 CDS2944987 1437 - 0.733473
xylF RSP_1180 ABC sugar (xylose) transporter, periplasmic binding proteinchromosome 1 CDS2948588 1026 - 0.675439
xylH RSP_1179 ABC sugar (xylose) transporter, inner membrane subunitchromosome 1 CDS2947202 1299 - 0.678984
xylR RSP_1181 xylose operon repressorchromosome 1 CDS2949805 1278 + 0.710485
zwf RSP_2734 Glucose-6-phosphate dehydrogenasechromosome 1 CDS1383171 1452 + 0.670799