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2024-05-25 15:48:35

Gene list

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COG category: Carbohydrate transport and metabolism
Genomic element: chromosome 2

Number of genes found: 173

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Photobacterium profundum, ss9
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PBPRB0148 putative 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerasechromosome 2 CDS169557 861 + 0.449477
NA PBPRB0992 hypothetical proteinchromosome 2 CDS1134046 336 - 0.327381
NA PBPRB1706 hypothetical proteinchromosome 2 CDS1855126 387 - 0.403101
NA PBPRB0468 conserved hypothetical proteinchromosome 2 CDS546724 846 - 0.421986
NA PBPRB1516 Hypothetical altronate oxidoreductasechromosome 2 CDS1666863 1458 + 0.383402
NA PBPRB0019 putative AraH,Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease componentschromosome 2 CDS27606 990 - 0.488889
NA PBPRB0497 hypothetical proteinchromosome 2 CDS578772 447 - 0.357942
NA PBPRB0059 putative transaldolase Bchromosome 2 CDS71705 951 - 0.452156
NA PBPRB1731 hypothetical 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerasechromosome 2 CDS1883765 840 - 0.389286
NA PBPRB0490 hypothetical proteinchromosome 2 CDS571369 1560 - 0.492308
NA PBPRB1341 conserved hypothetical proteinchromosome 2 CDS1495159 1086 + 0.406077
NA PBPRB0961 hypothetical proteinchromosome 2 CDS1094760 537 + 0.359404
NA PBPRB0541 hypothetical chitinasechromosome 2 CDS630462 2325 + 0.444301
NA PBPRB0806 hypothetical proteinchromosome 2 CDS936961 264 - 0.488636
NA PBPRB0406 putative glycogen synthasechromosome 2 CDS464668 1527 + 0.404715
NA PBPRB0717 hypothetical maltose/maltodextrin-binding proteinchromosome 2 CDS841354 1134 - 0.425044
NA PBPRB0624 hypothetical proteinchromosome 2 CDS746350 633 + 0.350711
NA PBPRB0217 hypothetical phosphoenolpyruvate-protein phosphotransferasechromosome 2 CDS243220 2508 - 0.449761
NA PBPRB0336 hypothetical proteinchromosome 2 CDS385003 903 + 0.389812
NA PBPRB0465 hypothetical proteinchromosome 2 CDS544018 873 + 0.441008
NA PBPRB0071 hypothetical proteinchromosome 2 CDS90507 930 - 0.4
NA PBPRB0321 hypothetical proteinchromosome 2 CDS363809 2970 - 0.464646
NA PBPRB1029 hypothetical proteinchromosome 2 CDS1174255 1446 - 0.446058
NA PBPRB0260 hypothetical proteinchromosome 2 CDS295314 2259 + 0.420983
AGAC PBPRB1039 putative N-acetylgalactosamine-specific IID component, PTS systemchromosome 2 CDS1187019 777 + 0.48906
AGAF PBPRB1041 Putative phosphotransferase system enzyme subunit, mannose/fructose-specific component IIAchromosome 2 CDS1188748 441 + 0.455782
AGR_L_33 PBPRB1876 putative C4-dicarboxylate transport system, periplasmic componentchromosome 2 CDS2060663 435 - 0.404598
ATU3137 PBPRB1511 Hypothetical dicarboxylate-binding periplasmic proteinchromosome 2 CDS1662006 768 - 0.360677
ATU4322 PBPRB0721 putative ABC transporter, permease proteinchromosome 2 CDS846833 960 + 0.419792
ATU4509 PBPRB0469 conserved hypothetical proteinchromosome 2 CDS548056 831 + 0.44645
ATU4551 PBPRB0474 putative sugar ABC transporter, periplasmic sugar-bindingchromosome 2 CDS553843 1014 - 0.414201
ATU4665 PBPRB0258 putative alpha-galactosidasechromosome 2 CDS292315 1356 + 0.434366
ATU5339 PBPRB0012 putative membrane proteinchromosome 2 CDS17264 888 + 0.426802
BA2516 PBPRB0466 hypothetical fructose-1,6-bisphosphate aldolasechromosome 2 CDS544903 828 + 0.413043
BA5447 PBPRB2005 putative PTS system, cellobiose-specific IIA componentchromosome 2 CDS2210272 312 - 0.384615
BGLB PBPRB2006 putative glycosyl hydrolasechromosome 2 CDS2210749 1419 - 0.424242
BH0702 PBPRB1878 putative small integral C4-dicarboxylate membrane transport proteinchromosome 2 CDS2061946 510 + 0.413725
BP3797 PBPRB0519 hypothetical proteinchromosome 2 CDS606208 636 + 0.402516
BRA0715 PBPRB0477 putative myo-inositol catabolismprotein iolBchromosome 2 CDS559580 894 + 0.418345
C2620 PBPRB1037 putative tagatose 6-phosphate kinasechromosome 2 CDS1184023 1305 + 0.452107
C3754 PBPRB1730 hypothetical C4-dicarboxylate binding proteinchromosome 2 CDS1882738 993 - 0.410876
C3755 PBPRB1514 Hypothetical TRAP-type C4-dicarboxylate transport system, small permease componentchromosome 2 CDS1664366 519 - 0.327553
C3756 PBPRB1513 hypothetical proteinchromosome 2 CDS1664091 276 - 0.373188
C3756 PBPRB1512 Hypothetical TRAP-type C4-dicarboxylate transport system, large permease componentchromosome 2 CDS1663007 1065 - 0.407512
C3756 PBPRB1879 C4-dicarboxylate transport system, putative integral membrane proteinchromosome 2 CDS2062481 1302 + 0.440092
C3756 PBPRB1728 putative permease large protein, C4-dicarboxylate transport systemchromosome 2 CDS1880820 1308 - 0.389908
C4337 PBPRB1733 putative 2-dehydro-3-deoxygluconokinasechromosome 2 CDS1885507 930 - 0.432258
C4416 PBPRB0363 putative mannitol-specific IIABC component, PTS systemchromosome 2 CDS408017 1953 - 0.44086
C4676 PBPRB1556 Hypothetical ribose ABC transporter proteinchromosome 2 CDS1707134 420 + 0.433333
C5003 PBPRB0422 putative maltose ABC transporter, permeaseproteinchromosome 2 CDS490518 1575 + 0.407619
CELA PBPRB2008 hypothetical cellobiose-specific IIB component, PTS systemchromosome 2 CDS2213604 381 - 0.375328
CELC2 PBPRB0304 putative endoglucanasechromosome 2 CDS343636 1026 - 0.464912
CPE2626 PBPRB0157 putative aldolasechromosome 2 CDS181846 867 + 0.43714
CPE2626 PBPRB1043 putative tagatose-bisphosphate aldolasechromosome 2 CDS1190362 855 + 0.451462
CT0995 PBPRB1536 Conserved hypothetical proteinchromosome 2 CDS1686384 864 - 0.451389
CTC00512 PBPRB0461 hypothetical myo-inositol catabolismprotein iolBchromosome 2 CDS538381 894 + 0.434004
CTC00906 PBPRB0472 putative sugar ABC transporter (permease)chromosome 2 CDS551216 1017 - 0.441495
CV0979 PBPRB1584 putative PTS system, glucose-specific IIBC componentchromosome 2 CDS1729784 1443 - 0.434511
CV3017 PBPRB0720 putative permease of ABC transporterchromosome 2 CDS845835 999 + 0.423423
DAK1 PBPRB0218 putative dihydroxyacetone kinasechromosome 2 CDS245790 627 - 0.429027
DCTM PBPRB1887 putative C4-dicarboxylate transport proteinchromosome 2 CDS2070690 1404 - 0.438746
DCTP PBPRB1889 putative C4-dicarboxylate-binding periplasmic proteinchromosome 2 CDS2072714 987 - 0.411348
DEXA PBPRB0410 putative glycosidasechromosome 2 CDS470489 1644 + 0.417275
EBIG983 PBPRB1826 hypothetical ebiP983chromosome 2 CDS2003183 1137 - 0.412489
ECS0397 PBPRB0034 putative beta-galactosidasechromosome 2 CDS46151 3093 - 0.478823
ECS4011 PBPRB1038 putative N-acetylgalactosamine-specific IIB componentchromosome 2 CDS1186528 474 + 0.434599
ECS4691 PBPRB1557 Putative ribose ABC transporterchromosome 2 CDS1707589 1515 + 0.450165
EDA PBPRB0159 putative4-hydroxy-2-oxoglutaratealdolase/2- deydro-3- deoxyphosphogluconate aldolasechromosome 2 CDS183821 645 + 0.463566
GNTP-2 PBPRB1409 putative DsdX permeasechromosome 2 CDS1566270 648 - 0.415123
KDGK PBPRB0158 hypothetical 2-dehydro-3-deoxygluconokinasechromosome 2 CDS182755 1074 + 0.42365
LL0421 PBPRB0714 putative ATPase component, ABC-type sugar transport systemschromosome 2 CDS837890 1137 - 0.41073
MALG PBPRB0423 putative ABC-type maltose transport system,permease componentchromosome 2 CDS492104 891 + 0.417508
MGLC PBPRB1870 putative galactoside ABC transporter, permease proteinchromosome 2 CDS2053465 1011 - 0.411474
MLL1508 PBPRB0021 conserved hypothetical proteinchromosome 2 CDS29350 1014 - 0.459566
NAGA PBPRB0147 putativeN-acetylglucosamine-6-phosphatedeacetyla sechromosome 2 CDS168384 1152 + 0.46875
PLU0057 PBPRB1558 Putative ribose ABC transporter, permease proteinchromosome 2 CDS1709100 990 + 0.448485
PLU0178 PBPRB1883 putative 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolasechromosome 2 CDS2067793 627 + 0.467305
PLU0836 PBPRB0144 putative permease proteinchromosome 2 CDS166231 765 + 0.45098
PLU0837 PBPRB1040 putative N-acetylgalactosamine-specific IID component, PTS systemchromosome 2 CDS1187785 888 + 0.467342
PLU2755 PBPRB2009 hypothetical phosphotransferase systemcellobiose-specific component IICchromosome 2 CDS2214369 1311 + 0.382914
PM1039 PBPRB1871 putative galactoside ABC transporter, ATP-binding proteinchromosome 2 CDS2054488 1476 - 0.382114
PMT0461 PBPRB1089 hypothetical proteinchromosome 2 CDS1234310 318 - 0.408805
PRO0756 PBPRB1060 conserved hypothetical proteinchromosome 2 CDS1205119 909 - 0.40484
PSPTO129 PBPRB1906 putative ABC-type sugar transport system, periplasmic componentchromosome 2 CDS2099081 1263 - 0.450515
PTXA PBPRB0274 putative phosphotransferase systemmannitol/fructose-specific IIA domainchromosome 2 CDS315512 531 + 0.47646
PULA PBPRB1016 putative pullulanase precursorchromosome 2 CDS1157412 3333 - 0.436544
RB0303 PBPRB0719 putative ATP-binding protein of ABCtransporterchromosome 2 CDS844322 1521 + 0.415516
RB1053 PBPRB0020 hypothetical ABC-type sugar transport system, ATPase componentchromosome 2 CDS28595 756 - 0.482804
RB1267 PBPRB1877 putative dicarboxylate-binding periplasmic proteinchromosome 2 CDS2061358 360 - 0.425
RS01739 PBPRB0783 conserved hypothetical proteinchromosome 2 CDS913977 888 + 0.425676
RS03568 PBPRB0235 putative carboxyphosphonoenolpyruvate phosphonomutasechromosome 2 CDS266569 870 + 0.458621
S1191 PBPRB0828 putative beta-hexosaminidasechromosome 2 CDS960075 1005 - 0.421891
S1885 PBPRB0366 conserved hypothetical proteinchromosome 2 CDS414998 888 - 0.422297
S2921 PBPRB1035 hypothetical transcriptional regulator GlpRchromosome 2 CDS1182061 795 + 0.391195
S3153 PBPRB1729 hypothetical C4-dicarboxylate transport system, small permease componentchromosome 2 CDS1882140 486 - 0.384774
S3383 PBPRB0143 putative PTS transport protein, component 2chromosome 2 CDS165695 501 + 0.429142
S4325 PBPRB1330 putative maltodextrin phosphorylasechromosome 2 CDS1481193 2463 - 0.429151
SAV7254 PBPRB0405 putative glucose-1-phosphateadenylyltransferasechromosome 2 CDS463461 1218 + 0.389984
SC8F11.0 PBPRB0464 hypothetical pfkB family carbohydrate kinasechromosome 2 CDS542548 996 + 0.467871
SCBAC28G PBPRB0201 hypothetical proteinchromosome 2 CDS221191 516 - 0.476744
SCO3915 PBPRB1046 hypothetical MFS transporterchromosome 2 CDS1193210 1185 + 0.447257
SCO5848 PBPRB0141 putative tagatose 6-phosphate kinasechromosome 2 CDS163209 1287 + 0.429681
SCO6483 PBPRB0767 putative multidrug transporterchromosome 2 CDS898404 1410 + 0.431206
SF1203 PBPRB0219 putative dihydroxyacetone kinasechromosome 2 CDS246434 1068 - 0.43633
SF2730 PBPRB0140 putative DeoR-family regulatory proteinchromosome 2 CDS162384 777 + 0.422136
SF3131 PBPRB1517 Putative altronate hydrolase, uxaAchromosome 2 CDS1668313 1500 + 0.405333
SF3166 PBPRB1036 hypothetical GlpR, transcriptional regulators of sugar metabolismchromosome 2 CDS1183238 777 + 0.445302
SF3634 PBPRB0362 putative mannitol-1-phosphate 5-dehydrogenasechromosome 2 CDS406767 1146 - 0.418848
SF3835 PBPRB1560 Putative ribokinasechromosome 2 CDS1711223 921 + 0.442997
SF4171 PBPRB0421 putative maltose-binding periplasmic proteins/domainschromosome 2 CDS489271 1182 + 0.44247
SF4171 PBPRB0416 putative maltose-binding periplasmic proteinchromosome 2 CDS480768 1185 + 0.432068
SF4346 PBPRB0268 hypothetical transcriptional regulatorchromosome 2 CDS308484 756 - 0.462963
SGBE PBPRB0275 putative sugar isomerase SgaE, AraD/FucA familychromosome 2 CDS316111 693 + 0.451659
SGBH PBPRB0276 putative 3-hexulose-6-phosphate synthasechromosome 2 CDS317025 645 + 0.448062
SGBU PBPRB0269 putative hexulose-6-phosphate isomerase SgbUchromosome 2 CDS309470 873 - 0.442153
SMC00430 PBPRB1065 hypothetical oxidoreductase proteinchromosome 2 CDS1209016 582 - 0.431271
SMC01583 PBPRB1412 hypothetical glucose dehydrogenasechromosome 2 CDS1568984 1077 + 0.433612
SO0450 PBPRB1150 putative transport proteinchromosome 2 CDS1296741 1161 + 0.393626
SO3135 PBPRB1888 hypothetical C4-dicarboxylate transport system, small permease componentchromosome 2 CDS2072096 561 - 0.404635
SO4458 PBPRB1009 putative carbohydrate kinase, PfkB familychromosome 2 CDS1149023 837 - 0.446834
SPY1301 PBPRB0716 hypothetical ABC-type sugar transport systems, permease componentschromosome 2 CDS839940 1299 - 0.414165
SPYM3_14 PBPRB1042 putative N-acetylglucosamine-6-phosphate deacetylasechromosome 2 CDS1189178 1194 + 0.488275
STY4498 PBPRB0259 putative melibiose permease IIchromosome 2 CDS293770 1428 + 0.434874
STY4737 PBPRB0272 putative DEOR-type transcriptional regulatorchromosome 2 CDS312536 756 - 0.465608
T0665 PBPRB1872 putative galactoside ABC transporter, periplasmic D-galactose/D-glucose-binding proteinchromosome 2 CDS2056066 978 - 0.41002
T1016 PBPRB0172 putative membrane proteinchromosome 2 CDS193212 915 - 0.419672
T2190 PBPRB0263 putative phosphotransferase system IIC components, N-acetylglucosamine-specific IIABC componentchromosome 2 CDS299761 1371 - 0.430343
T2471 PBPRB1155 hypothetical ROK family proteinchromosome 2 CDS1303254 939 - 0.425985
TTE0601 PBPRB2007 putative phosphotransferase system cellobiose-specific component IICchromosome 2 CDS2212219 1323 - 0.418745
TTE2704 PBPRB0614 putative phosphomannomutasechromosome 2 CDS733007 1710 + 0.450292
UHPC PBPRB0376 putative regulatory protein UhpCchromosome 2 CDS428622 1326 - 0.430618
UXAC PBPRB1515 Hypothetical uronate isomerasechromosome 2 CDS1665640 1224 + 0.420752
UXUA PBPRB1874 putative D-mannonate dehydratasechromosome 2 CDS2058462 1185 - 0.405063
VC2566 PBPRB1803 conserved hypothetical proteinchromosome 2 CDS1968909 876 + 0.428082
VCA0246 PBPRB0273 putative SgaT proteinchromosome 2 CDS313618 1881 + 0.43647
VPA0654 PBPRB1956 hypothetical proteinchromosome 2 CDS2153869 522 + 0.421456
VPA1215 PBPRB1911 hypothetical proteinchromosome 2 CDS2104574 879 + 0.450512
VPA1529 PBPRB1902 hypothetical proteinchromosome 2 CDS2092891 924 + 0.365801
VV1092 PBPRB1587 putative binding protein component of ABC sugar transporterchromosome 2 CDS1733639 1242 + 0.389694
VV20067 PBPRB0320 hypothetical proteinchromosome 2 CDS363479 210 + 0.37619
VV20400 PBPRB0404 hypothetical alpha-amylasechromosome 2 CDS461655 1425 - 0.378947
VV20937 PBPRB1506 hypothetical proteinchromosome 2 CDS1657592 1200 + 0.386667
VV21072 PBPRB1732 putative 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolasechromosome 2 CDS1884872 624 - 0.427885
VV21226 PBPRB0412 putative glycogen protein GlgXchromosome 2 CDS473443 1950 - 0.415385
VV21231 PBPRB0415 putative glycosidasechromosome 2 CDS478415 1800 + 0.432778
VV21408 PBPRB1100 putative glycosidasechromosome 2 CDS1246043 2064 - 0.424903
VV21456 PBPRB0127 putative permeasechromosome 2 CDS149916 897 + 0.424749
VVA0028 PBPRB0360 putative glucosamine-6-phosphate isomerasechromosome 2 CDS405081 801 - 0.40824
VVA0053 PBPRB0413 putative maltoporinchromosome 2 CDS475911 1359 + 0.431935
VVA0055 PBPRB0417 hypothetical glycogen debranching enzymechromosome 2 CDS482091 2796 + 0.448856
VVA0078 PBPRB1329 putative 4-alpha-glucanotransferasechromosome 2 CDS1478574 2175 - 0.429425
VVA0079 PBPRB1328 putative 1,4-alpha-glucan branching enzymechromosome 2 CDS1476361 2151 - 0.432357
VVA0122 PBPRB2004 hypothetical maltoporinchromosome 2 CDS2208507 1353 - 0.451589
XAC3185 PBPRB0994 hypothetical proteinchromosome 2 CDS1135943 621 - 0.428341
XYLE PBPRB0460 hyopthetical permeasechromosome 2 CDS536404 1443 - 0.419958
Y0031 PBPRB0420 putative MalK, ABC-type sugar transport systemschromosome 2 CDS487537 1143 - 0.447944
Y1201 PBPRB0765 hypothetical N-acetylglucosamine-6-phosphate deacetylasechromosome 2 CDS895960 1197 - 0.408521
Y2661 PBPRB0473 hypothetical galactoside transport ATP-binding protein mglAchromosome 2 CDS552277 1494 - 0.421017
Y2903 PBPRB1880 putative mannonate oxidoreductasechromosome 2 CDS2063865 1464 + 0.456967
Y3310 PBPRB0058 putative transketolase 1chromosome 2 CDS69616 2082 - 0.479827
YHJX PBPRB1915 putative resistance protein, yhjXchromosome 2 CDS2108142 1215 + 0.444444
YJGK PBPRB1886 conserved hypothetical proteinchromosome 2 CDS2070008 468 - 0.320513
YPO0284 PBPRB1864 conserved hypothetical prochromosome 2 CDS2044343 633 - 0.420221
YPO0854 PBPRB0715 hypothetical ABC-type maltose transport systems, permease componentchromosome 2 CDS839026 915 - 0.410929
YPO1813 PBPRB0718 putative periplasmic binding proteinchromosome 2 CDS843314 975 + 0.446154
YPO1952 PBPRB0457 hypothetical proteinchromosome 2 CDS530642 1965 - 0.411196
YPO1991 PBPRB1734 putative sugar-phosphate isomerasechromosome 2 CDS1886625 588 - 0.44898
YPO3268 PBPRB1863 hypothetical multidrug transport proteinchromosome 2 CDS2042512 1539 + 0.434698
YPO3990 PBPRB1882 hypothetical carbohydrate kinasechromosome 2 CDS2066808 972 + 0.459877
Z4487 PBPRB0145 putative PTS permease proteinchromosome 2 CDS166985 894 + 0.438479
Z4488 PBPRB0146 putative PTS permease proteinchromosome 2 CDS167938 444 + 0.434685
Z5252 PBPRB1559 Putative ribose ABC transporter, periplasmic D-ribose-binding proteinchromosome 2 CDS1710189 879 + 0.459613
Z5721 PBPRB0018 putative alpha-galactosidase (melibiase)chromosome 2 CDS26221 1383 - 0.461316