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2024-05-16 10:11:47

Gene list

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COG category: Carbohydrate transport and metabolism
Genomic element: chromosome

Number of genes found: 221

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPO1085 conserved hypothetical proteinchromosome CDS1140146 807 - 0.675341
NA SPO1262 membrane protein, putativechromosome CDS1331616 900 + 0.646667
NA SPO3643 integral membrane proteinchromosome CDS3845301 981 + 0.64526
NA SPO3820 transmembrane transporter, major facilitator familychromosome CDS4037027 1236 + 0.642395
NA SPO3785 sugar ABC transporter, permease proteinchromosome CDS3997508 939 - 0.596379
NA SPO3663 TRAP dicarboxylate family transporter, DctM subunitchromosome CDS3864852 1314 - 0.621005
NA SPO1821 sugar ABC transporter, permease proteinchromosome CDS1940135 681 - 0.637298
NA SPO1820 sugar ABC transporter, periplasmic sugar-binding proteinchromosome CDS1938786 1248 - 0.63141
NA SPO3787 sugar ABC transporter, periplasmic sugar-binding proteinchromosome CDS3999366 1650 - 0.609697
NA SPO0450 membrane protein, putativechromosome CDS461048 828 - 0.682367
NA SPO1772 TRAP dicarboxylate transporter, DctQ subunitchromosome CDS1889532 579 - 0.637306
NA SPO0212 conserved hypothetical proteinchromosome CDS232647 951 + 0.631966
NA SPO3122 membrane protein, putativechromosome CDS3331021 1233 - 0.620438
NA SPO2410 dihydroxy-acid dehydratase, putativechromosome CDS2561463 1782 - 0.636364
NA SPO3312 conserved hypothetical proteinchromosome CDS3509568 768 + 0.69401
NA SPO3504 membrane protein, putativechromosome CDS3708409 936 - 0.660256
NA SPO0618 transcriptional regulator, AraC familychromosome CDS636308 1047 - 0.628462
NA SPO2445 drug resistance transporter, Bcr/CflA subfamilychromosome CDS2597933 1266 - 0.628752
NA SPO2947 cupin family proteinchromosome CDS3146135 462 - 0.640693
NA SPO2547 TRAP dicarboxylate transporter, DctM subunitchromosome CDS2696888 1314 - 0.639269
NA SPO1454 TRAP dicarboxylate transporter, DctP subunitchromosome CDS1525447 1068 + 0.666667
NA SPO3735 major facilitator family proteinchromosome CDS3946774 1221 + 0.673219
NA SPO1630 membrane protein, putativechromosome CDS1732715 1632 - 0.65625
NA SPO1322 membrane protein, putativechromosome CDS1384857 915 - 0.662295
NA SPO2358 TRAP dicarboxylate transporter, DctP subunit, putativechromosome CDS2498972 1233 - 0.610706
NA SPO1404 membrane protein, putativechromosome CDS1474041 1227 - 0.669927
NA SPO1113 TRAP transporter, transmembrane protein, putativechromosome CDS1168219 534 + 0.653558
NA SPO3026 strictosidine synthase family proteinchromosome CDS3230614 1176 - 0.664966
NA SPO2993 MOFRL family proteinchromosome CDS3190130 1107 + 0.720867
NA SPO0323 membrane protein, putativechromosome CDS333666 867 - 0.67128
NA SPO0096 membrane protein, putativechromosome CDS96926 915 - 0.636066
NA SPO0304 lipoprotein, putativechromosome CDS317412 618 + 0.63754
NA SPO0611 sugar ABC transporter, permease proteinchromosome CDS631355 864 + 0.59375
NA SPO1823 sugar ABC transporter, ATP-binding proteinchromosome CDS1942037 1158 - 0.689119
NA SPO2112 transmembrane drug/metabolite transporter family proteinchromosome CDS2249417 900 + 0.683333
NA SPO3695 TRAP dicarboxylate transporter, DctM subunit, putativechromosome CDS3904078 1500 + 0.637333
NA SPO2502 beta-N-acetylhexosaminidase, putativechromosome CDS2648343 1008 - 0.686508
NA SPO3305 phosphoglycerate mutase family proteinchromosome CDS3504162 651 + 0.645161
NA SPO1816 TRAP dicarboxylate transporter, DctM subunit, putativechromosome CDS1934567 1410 + 0.656028
NA SPO0785 2-dehydro-3-deoxygalactonokinase, putativechromosome CDS818129 855 + 0.720468
NA SPO0959 membrane protein, putativechromosome CDS1011250 1017 - 0.669617
NA SPO1147 TRAP dicarboxylate transporter, DctP subunitchromosome CDS1202280 1020 - 0.590196
NA SPO1508 quinoprotein ethanol dehydrogenasechromosome CDS1583913 1821 - 0.631521
NA SPO2016 hypothetical proteinchromosome CDS2144312 486 - 0.652263
NA SPO3879 membrane protein, putativechromosome CDS4094178 1275 + 0.656471
NA SPO1386 HIT family proteinchromosome CDS1453104 423 + 0.640662
NA SPO1720 TRAP dicarboxylate transporter, DctQ subunitchromosome CDS1839351 501 - 0.62475
NA SPO1056 conserved hypothetical proteinchromosome CDS1107039 828 - 0.642512
NA SPO3151 HAD-superfamily subfamily IIA hydrolase, TIGR01459chromosome CDS3358735 933 + 0.630225
NA SPO0591 TRAP dicarboxylate transporter, DctP subunitchromosome CDS609873 1146 + 0.640489
NA SPO1093 drug resistance transporter, Bcr/CflA familychromosome CDS1147941 1206 - 0.661692
NA SPO2546 TRAP dicarboxylate transporter, DctQ subunitchromosome CDS2696374 513 - 0.598441
NA SPO2923 membrane protein, putativechromosome CDS3121576 909 - 0.656766
NA SPO1771 TRAP dicarboxylate transporter, DctM subunitchromosome CDS1888276 1260 - 0.630159
NA SPO2071 drug resistance transporter, Bcr/CflA subfamilychromosome CDS2202805 1209 + 0.656741
NA SPO1157 conserved hypothetical proteinchromosome CDS1209924 495 - 0.650505
NA SPO2128 transporter, putativechromosome CDS2260247 1218 + 0.665025
NA SPO0860 xylose repressor, putativechromosome CDS911496 1197 - 0.677527
NA SPO1465 TRAP dicarboxylate transporter, DctP subunit, putativechromosome CDS1537282 1029 - 0.616132
NA SPO1365 membrane protein, putativechromosome CDS1431592 921 - 0.679696
NA SPO2614 hypothetical proteinchromosome CDS2770257 684 - 0.633041
NA SPO1455 TRAP dicarboxylate transporter, DctQ subunit, putativechromosome CDS1526568 498 + 0.650602
NA SPO2426 membrane protein, putativechromosome CDS2576701 888 - 0.652027
NA SPO2481 drug/metabolite exporter family proteinchromosome CDS2631700 906 - 0.675497
NA SPO0707 transcriptional regulator, DeoR familychromosome CDS736566 876 - 0.64726
NA SPO1719 TRAP dicarboxylate transporter, DctM subunitchromosome CDS1838069 1278 - 0.623631
NA SPO0715 phosphocarrier protein HPrchromosome CDS745244 270 + 0.625926
NA SPO3693 TRAP dicarboxylate transporter, DctP subunitchromosome CDS3902323 1101 + 0.620345
NA SPO1175 membrane protein, putativechromosome CDS1227563 864 - 0.668981
NA SPO2357 TRAP dicarboxylate transporter, DctQ subunitchromosome CDS2498209 555 - 0.598198
NA SPO1940 conserved hypothetical proteinchromosome CDS2068824 1113 + 0.678347
NA SPO0864 glucokinase, putativechromosome CDS916075 924 + 0.700216
NA SPO1839 sugar ABC transporter, periplasmic sugar-binding proteinchromosome CDS1957239 1251 - 0.631495
NA SPO3784 sugar ABC transporter, ATP-binding proteinchromosome CDS3996400 1152 - 0.603299
NA SPO0736 TRAP dicarboxylate transporter, DctM subunitchromosome CDS765718 1353 - 0.627494
NA SPO3210 membrane protein, putativechromosome CDS3420199 453 + 0.671082
NA SPO3582 kinase, pfkB familychromosome CDS3790056 987 + 0.639311
NA SPO1841 BadF/BadG/BcrA/BcrD ATPase family proteinchromosome CDS1959554 891 + 0.686869
NA SPO1146 TRAP dicarboxylate transporter, DctQ subunitchromosome CDS1201644 567 - 0.603175
NA SPO2846 conserved hypothetical proteinchromosome CDS3044170 843 - 0.706999
NA SPO2309 membrane protein, putativechromosome CDS2444866 984 + 0.669715
NA SPO3481 membrane protein, putativechromosome CDS3686010 1203 - 0.66916
NA SPO3755 conserved hypothetical proteinchromosome CDS3965485 852 + 0.663146
NA SPO1835 sugar ABC transporter, ATP-binding proteinchromosome CDS1953388 1002 - 0.651697
NA SPO3012 inositol-1-monophosphatase, putativechromosome CDS3212902 786 - 0.648855
NA SPO2430 hydrolase, UxaA familychromosome CDS2580281 1494 - 0.662651
NA SPO1055 membrane protein, putativechromosome CDS1106581 435 - 0.652874
NA SPO1838 sugar ABC transporter, permease proteinchromosome CDS1956268 915 - 0.596721
NA SPO0889 membrane protein, putativechromosome CDS945708 843 + 0.714116
NA SPO1145 TRAP dicarboxylate transporter, DctM subunitchromosome CDS1200347 1287 - 0.623155
NA SPO3786 sugar ABC transporter, permease proteinchromosome CDS3998443 858 - 0.608392
NA SPO0852 oxidoreductase, Gfo/Idh/MocA familychromosome CDS900554 2100 - 0.699048
NA SPO3443 inositol monophosphatase family proteinchromosome CDS3646741 804 + 0.708955
NA SPO3772 NADH ubiquinone oxidoreductase, putativechromosome CDS3984160 984 - 0.646341
NA SPO3711 membrane protein, putativechromosome CDS3922533 1173 + 0.647059
NA SPO3590 conserved hypothetical proteinchromosome CDS3796832 441 - 0.634921
NA SPO2626 TRAP transporter, DctM subunitchromosome CDS2779290 1398 - 0.625894
NA SPO1456 TRAP transporter, DctM subunitchromosome CDS1527062 1314 + 0.645358
NA SPO2110 membrane protein, putativechromosome CDS2247244 867 + 0.626298
NA SPO3743 membrane protein, putativechromosome CDS3954112 879 - 0.664391
NA SPO3864 conserved domain proteinchromosome CDS4077014 1230 - 0.639837
NA SPO1963 phosphoglycerate mutase family proteinchromosome CDS2094300 651 - 0.64977
NA SPO1337 membrane protein, putativechromosome CDS1398756 903 - 0.650055
NA SPO1784 conserved hypothetical proteinchromosome CDS1901086 414 - 0.611111
NA SPO0404 phosphoglycerate mutase family proteinchromosome CDS417186 579 - 0.678756
NA SPO1970 phosphoglycerate mutase family proteinchromosome CDS2101153 657 - 0.694064
NA SPO1396 transporter, putativechromosome CDS1462852 1278 - 0.696401
NA SPO1774 3-hydroxyanthranilate 3,4-dioxygenasechromosome CDS1891175 543 - 0.615101
NA SPO3345 hypothetical proteinchromosome CDS3545997 426 - 0.65493
NA SPO3493 transporter, putativechromosome CDS3697729 1158 + 0.632988
NA SPO2225 membrane protein, putativechromosome CDS2366199 1263 - 0.627078
NA SPO1430 antibiotic efflux proteinchromosome CDS1501651 1218 + 0.697044
NA SPO2971 membrane protein, putativechromosome CDS3167743 1152 - 0.666667
NA SPO0609 sugar ABC transporter, ATP-binding proteinchromosome CDS629201 1065 + 0.642254
NA SPO0261 membrane protein, putativechromosome CDS279220 867 - 0.677047
NA SPO1114 TRAP dicarboxylate transporter, DctM subunitchromosome CDS1168749 1287 + 0.63481
NA SPO0796 conserved hypothetical proteinchromosome CDS829953 924 - 0.666667
NA SPO0424 membrane proteinchromosome CDS437751 1188 + 0.649832
NA SPO0593 TRAP dicarboxylate transporter, DctM subunitchromosome CDS611651 1329 + 0.640331
NA SPO1721 TRAP dicarboxylate transporter, DctP subunit, putativechromosome CDS1839928 1023 - 0.608016
NA SPO1535 polysaccharide deacetylase domain proteinchromosome CDS1616839 1284 + 0.72352
NA SPO3293 conserved domain proteinchromosome CDS3492498 258 - 0.612403
NA SPO2507 membrane protein, putativechromosome CDS2653910 894 - 0.666667
NA SPO2958 inositol monophosphatase family proteinchromosome CDS3158044 792 - 0.65404
NA SPO1464 TRAP dicarboxylate transporter, DctQ subunit, putativechromosome CDS1536714 504 - 0.621032
NA SPO1565 citrate lyase, putativechromosome CDS1655645 978 - 0.641104
NA SPO1814 TRAP dicarboxylate transporter, DctP subunit, putativechromosome CDS1932854 1017 + 0.649951
NA SPO2475 membrane protein, putativechromosome CDS2626109 936 - 0.666667
NA SPO0592 TRAP dicarboxylate transporter, DctQ subunitchromosome CDS611098 543 + 0.618785
NA SPO1189 membrane protein, putativechromosome CDS1243312 885 - 0.688136
NA SPO0441 hypothetical proteinchromosome CDS454811 342 + 0.687135
NA SPO2628 TRAP transporter solute receptor, DctP familychromosome CDS2781431 1002 - 0.61477
NA SPO0612 sugar ABC transporter, permease proteinchromosome CDS632230 798 + 0.595238
NA SPO1080 membrane protein, putativechromosome CDS1136078 927 + 0.656958
NA SPO1561 membrane protein, putativechromosome CDS1650542 846 - 0.683215
NA SPO3584 membrane protein, drug/metabolite transporter (DMT) familychromosome CDS3791729 921 + 0.69164
NA SPO2939 ATP-NAD kinase, putativechromosome CDS3139264 762 - 0.648294
NA SPO3665 bacterial extracellular solute-binding protein, family 7chromosome CDS3866786 975 - 0.624615
NA SPO0263 membrane proteinchromosome CDS280748 1044 - 0.626437
NA SPO3749 class II aldolase/adducin N-terminal domain proteinchromosome CDS3960505 756 + 0.632275
NA SPO1485 sodium:galactoside symporter family proteinchromosome CDS1558077 1230 + 0.636585
NA SPO0552 phosphoglycerate mutase family proteinchromosome CDS548102 585 - 0.700855
NA SPO3239 integral membrane proteinchromosome CDS3442207 900 - 0.685556
NA SPO0453 conserved hypothetical proteinchromosome CDS464016 459 - 0.660131
NA SPO1564 MOFRL domain proteinchromosome CDS1654384 1275 - 0.719216
NA SPO0610 sugar ABC transporter, ATP-binding proteinchromosome CDS630273 1086 + 0.645488
NA SPO3783 sugar ABC transporter, ATP-binding proteinchromosome CDS3995337 1062 - 0.609228
NA SPO1112 TRAP transporter, periplasmic proteinchromosome CDS1167143 1038 + 0.66763
NA SPO1837 sugar ABC transporter, permease proteinchromosome CDS1955416 840 - 0.597619
NA SPO1470 isocitrate lyase family proteinchromosome CDS1543179 864 - 0.667824
NA SPO3505 membrane protein, putativechromosome CDS3709396 1209 - 0.680728
NA SPO0714 PTS system IIA component, Man familychromosome CDS744835 393 + 0.631043
NA SPO1442 membrane protein, putativechromosome CDS1512858 903 + 0.65227
NA SPO0228 membrane protein, putativechromosome CDS247265 1209 + 0.66005
NA SPO2545 TRAP dicarboxylate transporter, DctP subunit, putativechromosome CDS2695285 1044 - 0.606322
NA SPO1779 membrane protein, major facilitator transporter familychromosome CDS1895936 1281 + 0.651834
NA SPO2563 hydroxypyruvate isomerase, putativechromosome CDS2714495 756 + 0.609788
NA SPO1822 sugar ABC transporter, permease proteinchromosome CDS1941094 942 - 0.643312
NA SPO1198 conserved hypothetical proteinchromosome CDS1251431 246 + 0.678862
NA SPO0738 TRAP dicarboxylate transporter, DctP subunitchromosome CDS767630 1020 - 0.652941
NA SPO2356 TRAP dicarboxylate transporter, DctM subunit, putativechromosome CDS2496837 1362 - 0.636564
NA SPO2060 kinase, pfkB familychromosome CDS2192314 894 + 0.705817
NA SPO0872 polysaccharide deacetylase family proteinchromosome CDS928972 1416 + 0.656073
NA SPO1773 TRAP dicarboxylate transporter, DctP subunit, putativechromosome CDS1890141 984 - 0.64126
NA SPO3686 HpcH/HpaI aldolase family proteinchromosome CDS3895050 771 - 0.673152
NA SPO0040 ABC transporter, permease proteinchromosome CDS40483 822 + 0.580292
NA SPO2627 TRAP transporter, DctQ subunitchromosome CDS2780687 672 - 0.608631
NA SPO0608 sugar ABC transporter, periplasmic sugar-binding proteinchromosome CDS627308 1779 + 0.617201
NA SPO2421 conserved hypothetical proteinchromosome CDS2572377 969 + 0.646027
NA SPO3554 membrane protein, putativechromosome CDS3763982 897 + 0.653289
algC SPO0946 phosphomannomutase/phosphoglucomutasechromosome CDS996822 1440 - 0.635417
apqZ SPO0970 aquaporin Zchromosome CDS1021580 696 + 0.658046
citE SPO0352 citrate lyase, beta subunitchromosome CDS366147 858 + 0.655012
deoB SPO2928 phosphopentomutasechromosome CDS3126591 1212 - 0.667492
dnaG SPO1749 DNA primasechromosome CDS1868156 1950 + 0.673333
eda-1 SPO3031 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolasechromosome CDS3236472 633 - 0.71406
edd SPO3032 phosphogluconate dehydratasechromosome CDS3237108 1806 - 0.681617
eno SPO2474 enolasechromosome CDS2624682 1278 - 0.649452
fda SPO1899 fructose-bisphosphate aldolase, class Ichromosome CDS2024755 882 + 0.620181
fsaB SPO3128 fructose-6-phosphate aldolase 2chromosome CDS3337734 654 + 0.61315
fucA SPO2562 L-fuculose phosphate aldolasechromosome CDS2713851 648 + 0.643519
galM SPO0857 aldose 1-epimerasechromosome CDS907689 936 + 0.679487
gap-1 SPO0701 glyceraldehyde-3-phosphate dehydrogenase, type Ichromosome CDS729188 1026 - 0.653021
gap-2 SPO0875 glyceraldehyde-3-phosphate dehydrogenase, type Ichromosome CDS932526 984 - 0.673781
gap-3 SPO2198 glyceraldehyde-3-phosphate dehydrogenase, type Ichromosome CDS2338261 1002 + 0.650699
gap-4 SPO3878 glyceraldehyde-3-phosphate dehydrogenase, type Ichromosome CDS4093183 999 + 0.620621
glmM SPO1364 phosphoglucosamine mutasechromosome CDS1429708 1347 + 0.659985
glpR SPO0731 glycerol-3-phosphate regulon repressorchromosome CDS759232 774 + 0.640827
glpX SPO1733 fructose-1,6-bisphosphatase, class IIchromosome CDS1851701 954 - 0.67086
gnl SPO2559 gluconolactonasechromosome CDS2710773 957 + 0.62069
gpmI SPO3810 2,3-bisphosphoglycerate-independent phosphoglycerate mutasechromosome CDS4023983 1518 + 0.646904
ilvD SPO3314 dihydroxy-acid dehydratasechromosome CDS3511107 1833 + 0.642117
kdgK SPO2420 2-dehydro-3-deoxygluconokinasechromosome CDS2571466 915 + 0.654645
kpsT SPO0949 capsular polysaccharide export ATP-binding proteinchromosome CDS1000873 714 - 0.589636
mclA SPO3608 malyl-CoA lyasechromosome CDS3814431 963 + 0.654206
nagA SPO1844 N-acetylglucosamine-6-phosphate deacetylasechromosome CDS1962254 1146 + 0.682373
pgi SPO2046 glucose-6-phosphate isomerasechromosome CDS2176372 1620 - 0.664815
pgk SPO2235 phosphoglycerate kinasechromosome CDS2377881 1197 + 0.66249
pgl SPO2047 6-phosphogluconolactonasechromosome CDS2178001 672 - 0.677083
ppdK SPO1359 pyruvate, phosphate dikinasechromosome CDS1422758 2625 + 0.677714
ptsN SPO0077 PTS IIA-like nitrogen-regulatory protein PtsNchromosome CDS77195 465 - 0.643011
pyk SPO3600 pyruvate kinasechromosome CDS3806925 1446 - 0.656985
rbsK SPO0013 ribokinasechromosome CDS13857 873 + 0.655212
rpe SPO0779 ribulose-phosphate 3-epimerasechromosome CDS812452 690 - 0.650725
rpiA SPO1327 ribose 5-phosphate isomerasechromosome CDS1389138 789 + 0.629911
rpiB SPO3180 ribose 5-phosphate isomerase Bchromosome CDS3389208 450 - 0.637778
tkt SPO1865 transketolasechromosome CDS1984235 2022 - 0.659248
tpiA SPO2621 triosephosphate isomerasechromosome CDS2776049 756 + 0.691799
ugpA SPO0239 SN-glycerol-3-phosphate ABC transporter, permease proteinchromosome CDS257886 921 - 0.602606
ugpB SPO0240 SN-glycerol-3-phophate ABC transporter, periplasmic SN-glycerol-3-phosphate-binding proteinchromosome CDS258851 1386 - 0.611833
ugpE SPO0238 SN-glycerol-3-phosphate ABC transporter, permease proteinchromosome CDS257035 852 - 0.584507
upgC SPO0237 SN-glycerol-3-phosphate ABC transporter, ATP-binding proteinchromosome CDS255969 1056 - 0.648674
uxuA SPO1723 mannonate dehydratasechromosome CDS1841740 1212 + 0.639439
uxuB SPO1724 D-mannonate oxidoreductasechromosome CDS1842948 1485 + 0.637037
xylA SPO0856 xylose isomerasechromosome CDS906362 1305 + 0.626054
xylB SPO0855 xylulokinasechromosome CDS904917 1449 + 0.694272
xylF SPO0861 xylose ABC transporter, periplasmic xylose-binding proteinchromosome CDS912912 1029 + 0.653061
xylG SPO0863 xylose ABC transporter, ATP-binding proteinchromosome CDS915302 771 + 0.603113
xylH SPO0862 xylose ABC transporter, permease proteinchromosome CDS914007 1299 + 0.646651
zwf-1 SPO2048 glucose-6-phosphate 1-dehydrogenasechromosome CDS2178669 1458 - 0.648148
zwf-2 SPO3033 glucose-6-phosphate 1-dehydrogenasechromosome CDS3238916 1452 - 0.637052