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2024-05-14 12:50:44

Gene list

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COG category: Carbohydrate transport and metabolism
Genomic element: chromosome 2

Number of genes found: 124

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Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VPA0038 glucosamine-6-phosphate isomerasechromosome 2 CDS31871 801 - 0.456929
VPA0055 chitinasechromosome 2 CDS45762 2547 - 0.494307
VPA0080 putative sugar-phosphate isomerasechromosome 2 CDS70611 636 + 0.474843
VPA0082 putative 2-dehydro-3-deoxygluconokinasechromosome 2 CDS72333 930 + 0.487097
VPA0083 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolasechromosome 2 CDS73274 624 + 0.485577
VPA0098 putative efflux pump proteinchromosome 2 CDS89885 1491 + 0.488263
VPA0102 putative isomerasechromosome 2 CDS94374 2691 + 0.490896
VPA0116 permeasechromosome 2 CDS108394 1353 + 0.495196
VPA0117 conserved hypothetical proteinchromosome 2 CDS109763 1137 + 0.534741
VPA0119 hypothetical proteinchromosome 2 CDS112525 900 + 0.477778
VPA0168 multidrug resistance protein Dchromosome 2 CDS163045 1206 - 0.501658
VPA0180 phospho-beta-glucosidase Bchromosome 2 CDS176615 1392 - 0.45977
VPA0230 putative sugar phosphotransferase component II Bchromosome 2 CDS235189 288 - 0.447917
VPA0231 phosphotransferase enzyme II, A componentchromosome 2 CDS235544 444 - 0.472973
VPA0241 hypothetical proteinchromosome 2 CDS246294 909 + 0.475248
VPA0297 PTS system, fructose-specific IIBC componentchromosome 2 CDS297376 1401 - 0.47823
VPA0298 PTS system, fructose-specific IIA componentchromosome 2 CDS298788 441 - 0.38322
VPA0303 putative regulatory proteinchromosome 2 CDS303524 741 + 0.479082
VPA0314 hypothetical proteinchromosome 2 CDS312565 909 - 0.480748
VPA0333 conserved hypothetical proteinchromosome 2 CDS326797 1209 - 0.468983
VPA0357 putative beta-mannosidase precursorchromosome 2 CDS349622 2409 + 0.467829
VPA0372 phosphoenolpyruvate synthasechromosome 2 CDS367205 2388 - 0.469849
VPA0389 hypothetical proteinchromosome 2 CDS383844 2880 + 0.474306
VPA0403 putative membrane proteinchromosome 2 CDS400001 909 - 0.455446
VPA0439 hypothetical proteinchromosome 2 CDS428376 636 + 0.471698
VPA0447 hypothetical proteinchromosome 2 CDS437900 1650 - 0.433939
VPA0461 alpha-amylasechromosome 2 CDS456193 1350 + 0.46
VPA0492 conserved hypothetical proteinchromosome 2 CDS499136 1035 + 0.457971
VPA0500 putative PTS system, mannitol-specific enzyme II componentchromosome 2 CDS506781 444 + 0.432432
VPA0501 mannitol-specific PTS system enzyme II componentchromosome 2 CDS507237 1428 + 0.496499
VPA0520 multidrug resistance protein Dchromosome 2 CDS526902 1194 + 0.457286
VPA0525 putative transporter, DME familychromosome 2 CDS529665 891 - 0.482604
VPA0535 putative phosphomannomutasechromosome 2 CDS537839 1695 - 0.485546
VPA0565 putative glucose dehydrogenase-Bchromosome 2 CDS564628 1122 - 0.467023
VPA0569 putative permeasechromosome 2 CDS568291 903 + 0.477298
VPA0613 putative permeasechromosome 2 CDS617839 879 + 0.492605
VPA0669 hypothetical proteinchromosome 2 CDS687256 306 - 0.457516
VPA0673 methylglyoxal synthasechromosome 2 CDS692846 456 - 0.480263
VPA0674 periplasmic protein TorTchromosome 2 CDS693365 1005 - 0.475622
VPA0701 putative oxalate/formate antiporterchromosome 2 CDS726618 1233 - 0.479319
VPA0757 hypothetical proteinchromosome 2 CDS787957 885 - 0.463277
VPA0811 PTS system, fructose-specific IIBC componentchromosome 2 CDS842345 1734 - 0.497117
VPA0812 1-phosphofructokinasechromosome 2 CDS844098 975 - 0.495385
VPA0813 PTS system, fructose-specific IIA/FPR componentchromosome 2 CDS845084 1131 - 0.485411
VPA0823 pyruvate kinase IIchromosome 2 CDS853898 1479 - 0.487492
VPA0824 putative regulatory protein UhpCchromosome 2 CDS855511 1380 - 0.473913
VPA0832 chitodextrinasechromosome 2 CDS865637 3165 + 0.485308
VPA0833 glucose-1-phosphate adenylyltransferasechromosome 2 CDS868910 1215 - 0.455967
VPA0835 inosine-guanosine kinasechromosome 2 CDS872467 1305 - 0.460536
VPA0904 hypothetical proteinchromosome 2 CDS942059 360 - 0.516667
VPA0905 hypothetical proteinchromosome 2 CDS942584 312 - 0.474359
VPA0963 MFS family, hexose phosphate transport proteinchromosome 2 CDS1005595 1395 + 0.463799
VPA0966 regulatory protein UhpCchromosome 2 CDS1009246 1341 + 0.490679
VPA0967 putative mannose-6-phosphate isomerasechromosome 2 CDS1010711 1236 + 0.470065
VPA0973 putative MFS family transport proteinchromosome 2 CDS1018868 1161 + 0.481481
VPA0999 alpha-amylasechromosome 2 CDS1050712 1524 - 0.461942
VPA1016 multidrug resistance protein Dchromosome 2 CDS1069624 1134 - 0.448854
VPA1019 conserved hypothetical proteinchromosome 2 CDS1072272 528 - 0.458333
VPA1083 ribokinasechromosome 2 CDS1142215 918 - 0.485839
VPA1084 ribose ABC transporter, periplasmic D-ribose-binding proteinchromosome 2 CDS1143361 879 - 0.499431
VPA1085 ribose ABC transporter, permease proteinchromosome 2 CDS1144325 984 - 0.480691
VPA1086 ribose ABC transporter, ATP-binding proteinchromosome 2 CDS1145305 1506 - 0.465471
VPA1087 ribose ABC transporter proteinchromosome 2 CDS1146833 420 - 0.466667
VPA1177 putative chitinase Achromosome 2 CDS1245266 1293 - 0.472544
VPA1180 transaldolase Bchromosome 2 CDS1248158 951 + 0.462671
VPA1181 transketolase 1chromosome 2 CDS1249232 1992 + 0.490964
VPA1184 putative drug transport transmembrane proteinchromosome 2 CDS1253136 1179 - 0.469042
VPA1215 hypothetical proteinchromosome 2 CDS1288149 942 + 0.476645
VPA1217 hypothetical proteinchromosome 2 CDS1289874 1038 - 0.463391
VPA1221 LuxP proteinchromosome 2 CDS1295259 1098 - 0.442623
VPA1230 glyceraldehyde 3-phosphate dehydrogenasechromosome 2 CDS1304527 1434 + 0.467225
VPA1283 putative MFS transporterchromosome 2 CDS1361618 1215 + 0.463374
VPA1341 putative Spa29, component of the Mxi-Spa secretion machinerychromosome 2 CDS1413045 684 - 0.375731
VPA1384 hypothetical proteinchromosome 2 CDS1455728 378 - 0.455026
VPA1385 putative integral membrane proteinchromosome 2 CDS1456060 333 - 0.444444
VPA1399 maltose ABC transporter, permease proteinchromosome 2 CDS1469083 891 - 0.461279
VPA1400 maltose ABC transporter, permease proteinchromosome 2 CDS1469986 1575 - 0.460952
VPA1401 maltose ABC transporter, periplasmic maltose-binding proteinchromosome 2 CDS1471640 1179 - 0.465649
VPA1402 maltose/maltodextrin ABC transporter, ATP-binding proteinchromosome 2 CDS1473493 1119 + 0.45487
VPA1413 hypothetical proteinchromosome 2 CDS1486671 402 + 0.440298
VPA1420 PTS system, fructose-specific IIABC componentchromosome 2 CDS1492924 1872 - 0.486645
VPA1421 PTS system, fructose-specific IIB componentchromosome 2 CDS1495063 303 + 0.471947
VPA1422 putative PTS system, nitrogen regulatory IIA componentchromosome 2 CDS1495374 777 + 0.465894
VPA1424 PTS system, fructose-specific IIABC componentchromosome 2 CDS1497413 1908 + 0.499476
VPA1425 mannose-6-phosphate isomerasechromosome 2 CDS1499396 1233 + 0.484996
VPA1429 hypothetical proteinchromosome 2 CDS1503361 2046 - 0.463832
VPA1484 hypothetical proteinchromosome 2 CDS1584962 1182 - 0.468697
VPA1491 hypothetical proteinchromosome 2 CDS1590307 744 + 0.469086
VPA1529 hypothetical proteinchromosome 2 CDS1631144 927 - 0.459547
VPA1564 hypothetical proteinchromosome 2 CDS1661034 945 + 0.458201
VPA1569 putative transaldolasechromosome 2 CDS1666704 675 + 0.453333
VPA1574 putative membrane transport proteinchromosome 2 CDS1670691 1191 + 0.47691
VPA1576 putative transmembrane proteinchromosome 2 CDS1672966 870 + 0.482759
VPA1593 putative cyclodextrin glucanotransferasechromosome 2 CDS1688249 2634 + 0.493166
VPA1605 hypothetical proteinchromosome 2 CDS1704585 390 - 0.423077
VPA1616 alpha-amylasechromosome 2 CDS1714130 2061 - 0.492965
VPA1618 1,4-alpha-glucan branching enzymechromosome 2 CDS1717200 2268 - 0.492945
VPA1619 4-alpha-glucanotransferasechromosome 2 CDS1719663 2181 - 0.491976
VPA1620 maltodextrin phosphorylasechromosome 2 CDS1721961 2454 - 0.486553
VPA1628 hypothetical proteinchromosome 2 CDS1731307 297 + 0.468013
VPA1638 putative pullulanase precursorchromosome 2 CDS1743486 3990 + 0.491479
VPA1641 putative maltogenic amylasechromosome 2 CDS1749551 1611 - 0.476102
VPA1644 maltose-inducible porinchromosome 2 CDS1753012 1299 - 0.464973
VPA1645 glycogen operon protein GlgXchromosome 2 CDS1754755 1992 + 0.48243
VPA1647 hypothetical multidrug resistance protein Dchromosome 2 CDS1757631 1209 + 0.501241
VPA1660 putative transport proteinchromosome 2 CDS1779042 1206 + 0.503317
VPA1663 putative binding protein component of ABC sugar transporterchromosome 2 CDS1783317 1245 - 0.527711
VPA1667 PTS system, glucose-specific IIBC componentchromosome 2 CDS1786945 1443 + 0.520443
VPA1671 ABC-type arabinose transport system, permease componentchromosome 2 CDS1791228 990 - 0.488889
VPA1672 L-arabinose transport ATP-binding proteinchromosome 2 CDS1792232 1521 - 0.463511
VPA1673 L-arabinose-binding periplasmic protein precursorchromosome 2 CDS1793803 1002 - 0.47006
VPA1675 sugar isomerase SgaE, AraD/FucA familychromosome 2 CDS1796872 741 + 0.503374
VPA1676 putative L-arabinose isomerasechromosome 2 CDS1797619 1497 + 0.478958
VPA1691 hypothetical proteinchromosome 2 CDS1809953 696 + 0.45546
VPA1695 6-phospho-beta-glucosidasechromosome 2 CDS1813073 1314 + 0.491629
VPA1700 mannonate dehydratasechromosome 2 CDS1818647 1188 - 0.494949
VPA1702 putative dicarboxylate-binding periplasmic proteinchromosome 2 CDS1820863 984 - 0.471545
VPA1703 putative small integral C4-dicarboxylate membrane transport proteinchromosome 2 CDS1822162 522 + 0.47318
VPA1704 putative integral membrane protein, possible transporterchromosome 2 CDS1822695 1302 + 0.506912
VPA1705 mannonate oxidoreductasechromosome 2 CDS1824048 1467 + 0.511929
VPA1706 putative uronate isomerasechromosome 2 CDS1825524 1413 + 0.503185
VPA1707 putative 2-dehydro-3-deoxygluconokinasechromosome 2 CDS1826940 978 + 0.496933
VPA1708 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolasechromosome 2 CDS1827927 630 + 0.504762
VPA1744 putative PTS system, sucrose-specific IIBC componentchromosome 2 CDS1865492 1455 + 0.484536