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2024-05-02 23:38:29

Gene list

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COG category: Carbohydrate transport and metabolism
Organism: Rhodoferax ferrireducens DSM 15236, DSM 15236

Number of genes found: 209

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Rhodoferax ferrireducens DSM 15236, DSM 15236
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Rfer_0516 major facilitator superfamily MFS_1chromosome CDS538923 1326 - 0.61463
NA Rfer_1245 sugar isomerase (SIS)chromosome CDS1340257 603 + 0.504146
NA Rfer_4179 Citrate lyasechromosome CDS4649601 909 + 0.612761
NA Rfer_2999 Phosphomannomutasechromosome CDS3306156 1428 - 0.637955
NA Rfer_1756 major facilitator superfamily MFS_1chromosome CDS1889588 1224 + 0.669935
NA Rfer_1921 dihydroxy-acid dehydratasechromosome CDS2062504 1695 - 0.614749
NA Rfer_2013 phosphoglucosamine mutasechromosome CDS2170275 1332 + 0.598348
NA Rfer_1206 major facilitator superfamily MFS_1chromosome CDS1292342 1227 + 0.597392
NA Rfer_3621 protein of unknown function DUF6, transmembranechromosome CDS4037623 960 + 0.641667
NA Rfer_1903 periplasmic binding protein/LacI transcriptional regulatorchromosome CDS2043329 1041 - 0.601345
NA Rfer_1698 major facilitator superfamily MFS_1chromosome CDS1826942 1284 + 0.614486
NA Rfer_1122 mannose-6-phosphate isomerase, type IIchromosome CDS1205881 369 - 0.596206
NA Rfer_0284 protein of unknown function DUF6, transmembranechromosome CDS287927 891 + 0.606061
NA Rfer_0277 NmrA-likechromosome CDS281882 891 - 0.654321
NA Rfer_3233 conserved hypothetical proteinchromosome CDS3581459 948 + 0.651899
NA Rfer_1220 Drug resistance transporter Bcr/CflA subfamilychromosome CDS1306461 1239 + 0.615012
NA Rfer_4196 TRAP dicarboxylate transporter-DctP subunitchromosome CDS4665237 1002 - 0.555888
NA Rfer_0532 Ribulose-phosphate 3-epimerasechromosome CDS557358 717 + 0.589958
NA Rfer_0602 HPrNtrchromosome CDS627489 270 + 0.585185
NA Rfer_1209 histidine triad (HIT) proteinchromosome CDS1295846 396 - 0.563131
NA Rfer_1095 binding-protein-dependent transport systems inner membrane componentchromosome CDS1172532 855 - 0.575439
NA Rfer_1126 transaldolasechromosome CDS1209450 948 + 0.614979
NA Rfer_1491 Triosephosphate isomerasechromosome CDS1605357 744 + 0.575269
NA Rfer_0495 HpcH/HpaI aldolasechromosome CDS513880 711 - 0.616034
NA Rfer_0960 major facilitator superfamily MFS_1chromosome CDS1010162 1146 + 0.569808
NA Rfer_2206 ribose 5-phosphate isomerasechromosome CDS2412015 705 + 0.591489
NA Rfer_0314 major facilitator superfamily MFS_1chromosome CDS313865 1212 + 0.544554
NA Rfer_3564 transcriptional regulator, DeoR familychromosome CDS3962815 795 - 0.591195
NA Rfer_1108 binding-protein-dependent transport systems inner membrane componentchromosome CDS1188090 894 - 0.582774
NA Rfer_0919 Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)chromosome CDS964441 1029 + 0.56171
NA Rfer_0125 periplasmic binding protein/LacI transcriptional regulatorchromosome CDS129460 1071 - 0.557423
NA Rfer_3567 2-keto-3-deoxygluconate permeasechromosome CDS3965937 975 - 0.578462
NA Rfer_4019 conserved hypothetical proteinchromosome CDS4483521 879 + 0.679181
NA Rfer_0751 PTS IIA-like nitrogen-regulatory protein PtsNchromosome CDS786857 468 + 0.58547
NA Rfer_0242 hypothetical proteinchromosome CDS239737 1203 + 0.596841
NA Rfer_2161 alpha amylasechromosome CDS2353320 2043 - 0.596182
NA Rfer_3673 binding-protein-dependent transport systems inner membrane componentchromosome CDS4093001 813 - 0.547355
NA Rfer_2334 carbohydrate kinase, FGGYchromosome CDS2564906 1560 + 0.646795
NA Rfer_3983 polysaccharide deacetylasechromosome CDS4446714 855 + 0.632749
NA Rfer_0204 Fructose-bisphosphate aldolase, class II, Calvin cycle subtypechromosome CDS202100 1065 - 0.599061
NA Rfer_1260 NAD-dependent epimerase/dehydratasechromosome CDS1354551 1149 + 0.550914
NA Rfer_2099 major facilitator superfamily MFS_1chromosome CDS2272672 1221 - 0.573301
NA Rfer_2060 6-phosphogluconate dehydratasechromosome CDS2230171 1851 + 0.663965
NA Rfer_1563 putative transmembrane proteinchromosome CDS1689163 1158 - 0.609672
NA Rfer_2650 Phosphopyruvate hydratasechromosome CDS2915825 1284 + 0.595016
NA Rfer_0123 inner-membrane translocatorchromosome CDS126815 1032 - 0.540698
NA Rfer_1096 binding-protein-dependent transport systems inner membrane componentchromosome CDS1173401 885 - 0.577401
NA Rfer_0512 Glycogen/starch synthases, ADP-glucose typechromosome CDS532343 1485 - 0.622222
NA Rfer_3131 periplasmic binding protein/LacI transcriptional regulatorchromosome CDS3470163 945 + 0.561905
NA Rfer_0678 polysaccharide deacetylasechromosome CDS707541 969 + 0.573787
NA Rfer_2609 Phosphoglycerate mutasechromosome CDS2873464 546 - 0.648352
NA Rfer_1164 conserved hypothetical proteinchromosome CDS1248289 315 + 0.590476
NA Rfer_0938 KDPG and KHG aldolasechromosome CDS987697 636 + 0.605346
NA Rfer_0950 KDPG and KHG aldolasechromosome CDS998931 636 + 0.553459
NA Rfer_1754 Beta-N-acetylhexosaminidasechromosome CDS1888083 1095 + 0.642922
NA Rfer_0907 Drug resistance transporter EmrB/QacA subfamilychromosome CDS949579 1491 - 0.551308
NA Rfer_2874 Twin-arginine translocation pathway signalchromosome CDS3175555 1086 - 0.566298
NA Rfer_2408 citrate lyase, beta subunitchromosome CDS2650686 873 - 0.58992
NA Rfer_2155 HAD-superfamily hydrolase subfamily IIBchromosome CDS2339030 1041 + 0.612872
NA Rfer_2162 1,4-alpha-glucan branching enzymechromosome CDS2355355 1878 - 0.596379
NA Rfer_2160 Trehalose synthase-likechromosome CDS2349969 3339 - 0.603175
NA Rfer_1946 major facilitator superfamily MFS_1chromosome CDS2089331 1263 + 0.61441
NA Rfer_0972 major facilitator superfamily MFS_1chromosome CDS1021985 1227 + 0.603912
NA Rfer_1289 histidine triad (HIT) proteinchromosome CDS1385080 444 + 0.644144
NA Rfer_2704 Inositol phosphatase/fructose-1,6-bisphosphatasechromosome CDS2976611 1005 + 0.610945
NA Rfer_1097 extracellular solute-binding protein, family 1chromosome CDS1174624 1251 - 0.560352
NA Rfer_1100 binding-protein-dependent transport systems inner membrane componentchromosome CDS1178809 936 + 0.592949
NA Rfer_2157 Malto-oligosyltrehalose trehalohydrolasechromosome CDS2345226 1764 - 0.651927
NA Rfer_4111 glyceraldehyde-3-phosphate dehydrogenase, type Ichromosome CDS4587642 999 - 0.585586
NA Rfer_3016 putative transmembrane proteinchromosome CDS3326005 912 - 0.627193
NA Rfer_1102 Beta-glucosidasechromosome CDS1180574 1347 + 0.639198
NA Rfer_3486 HpcH/HpaI aldolasechromosome CDS3877681 840 + 0.634524
NA Rfer_1099 extracellular solute-binding protein, family 1chromosome CDS1177505 1263 + 0.610451
NA Rfer_0941 2-dehydro-3-deoxyglucarate aldolasechromosome CDS990898 819 + 0.619048
NA Rfer_4184 TRAP dicarboxylate transporter, DctP subunitchromosome CDS4653467 996 - 0.5251
NA Rfer_2764 PfkBchromosome CDS3052392 1113 - 0.615454
NA Rfer_1286 binding-protein-dependent transport systems inner membrane componentchromosome CDS1378721 882 - 0.580499
NA Rfer_0435 NAD-dependent epimerase/dehydratasechromosome CDS440514 891 - 0.581369
NA Rfer_0362 phosphofructokinasechromosome CDS363177 1215 - 0.618107
NA Rfer_2167 major facilitator superfamily MFS_1chromosome CDS2362300 1212 + 0.633663
NA Rfer_1765 NmrA-likechromosome CDS1897283 1101 - 0.634877
NA Rfer_0444 class II aldolase/adducin-likechromosome CDS450080 675 - 0.637037
NA Rfer_2109 glucose sorbosone dehydrogenasechromosome CDS2285394 1137 - 0.646438
NA Rfer_0664 polysaccharide deacetylasechromosome CDS688937 876 + 0.561644
NA Rfer_0656 NAD-dependent epimerase/dehydratasechromosome CDS680042 1008 + 0.5625
NA Rfer_0980 class II aldolase/adducin-likechromosome CDS1029587 765 - 0.598693
NA Rfer_0717 Aldose 1-epimerasechromosome CDS759180 822 - 0.656934
NA Rfer_0343 protein of unknown function DUF6, transmembranechromosome CDS342770 870 + 0.605747
NA Rfer_1428 putative transport proteinchromosome CDS1537996 1020 - 0.642157
NA Rfer_0856 major facilitator superfamily MFS_1chromosome CDS893032 1194 - 0.608878
NA Rfer_0601 PTS system fructose subfamily IIA componentchromosome CDS627074 447 + 0.610738
NA Rfer_1900 RbsD or FucU transportchromosome CDS2040954 453 - 0.629139
NA Rfer_4112 transketolasechromosome CDS4588676 2082 - 0.626801
NA Rfer_1393 Inositol phosphatase/fructose-1,6-bisphosphatasechromosome CDS1505354 1095 - 0.626484
NA Rfer_1110 extracellular solute-binding protein, family 1chromosome CDS1189895 1236 - 0.597087
NA Rfer_3662 glycoside hydrolase, family 16chromosome CDS4081680 1782 + 0.556678
NA Rfer_3481 TRAP dicarboxylate transporter, DctP subunitchromosome CDS3872509 1032 + 0.565891
NA Rfer_1111 Beta-glucosidasechromosome CDS1191207 1371 - 0.598833
NA Rfer_1840 TRAP dicarboxylate transporter-DctP subunitchromosome CDS1978549 1017 + 0.540806
NA Rfer_2873 Twin-arginine translocation pathway signalchromosome CDS3173806 1080 - 0.584259
NA Rfer_4171 Citryl-CoA lyasechromosome CDS4641696 918 - 0.618736
NA Rfer_3210 protein of unknown function DUF6, transmembranechromosome CDS3556818 930 - 0.62043
NA Rfer_3874 phosphoheptose isomerasechromosome CDS4326055 594 + 0.611111
NA Rfer_0952 binding-protein-dependent transport systems inner membrane componentchromosome CDS1000933 816 - 0.53799
NA Rfer_0437 ABC transporter relatedchromosome CDS442155 1506 - 0.60093
NA Rfer_0410 protein of unknown function DUF6, transmembranechromosome CDS416735 942 + 0.653928
NA Rfer_1426 protein of unknown function DUF6, transmembranechromosome CDS1534797 909 - 0.634763
NA Rfer_0947 mannonate dehydratasechromosome CDS996231 1047 - 0.585482
NA Rfer_1561 ADP-L-glycero-D-manno-heptose-6-epimerasechromosome CDS1687197 1023 - 0.57478
NA Rfer_1027 Galactarate dehydratasechromosome CDS1086581 1530 - 0.581046
NA Rfer_3237 protein of unknown function DUF6, transmembranechromosome CDS3587791 903 + 0.604651
NA Rfer_0467 major facilitator superfamily MFS_1chromosome CDS478488 1212 - 0.671617
NA Rfer_0479 Senescence marker protein-30 (SMP-30)chromosome CDS495521 939 + 0.683706
NA Rfer_0936 PfkBchromosome CDS985848 927 + 0.610572
NA Rfer_1483 TRAP dicarboxylate transporter, DctP subunitchromosome CDS1595210 996 - 0.537149
NA Rfer_0649 protein of unknown function DUF6, transmembranechromosome CDS673175 918 - 0.563181
NA Rfer_1145 phosphoglucomutase, alpha-D-glucose phosphate-specificchromosome CDS1229726 1680 + 0.580952
NA Rfer_1235 NAD-dependent epimerase/dehydratasechromosome CDS1330447 963 + 0.602285
NA Rfer_3728 protein of unknown function DUF6, transmembranechromosome CDS4159212 948 + 0.633966
NA Rfer_2361 Cupin 2 proteinchromosome CDS2599666 393 - 0.552163
NA Rfer_1125 glucose-6-phosphate 1-dehydrogenasechromosome CDS1207781 1455 - 0.613058
NA Rfer_1109 binding-protein-dependent transport systems inner membrane componentchromosome CDS1188980 897 - 0.58194
NA Rfer_2721 Glycosyl transferases related to UDP-glucuronosyltransferase-likechromosome CDS3002311 1338 - 0.556054
NA Rfer_1536 Drug resistance transporter Bcr/CflA subfamilychromosome CDS1652901 1227 - 0.653627
NA Rfer_1479 6-phosphofructokinasechromosome CDS1590184 1110 + 0.641441
NA Rfer_1023 major facilitator superfamily MFS_1chromosome CDS1081289 1227 + 0.603097
NA Rfer_3895 Alpha-glucan phosphorylasechromosome CDS4348051 2142 + 0.68394
NA Rfer_3130 inner-membrane translocatorchromosome CDS3469065 1002 + 0.59481
NA Rfer_1113 glycoside hydrolase, family 3-likechromosome CDS1193724 2601 - 0.600923
NA Rfer_3298 NAD-dependent epimerase/dehydratasechromosome CDS3661846 918 - 0.643791
NA Rfer_2061 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolasechromosome CDS2232053 636 + 0.638365
NA Rfer_1936 conserved hypothetical proteinchromosome CDS2078899 291 + 0.556701
NA Rfer_0456 Dihydroxy-acid dehydratasechromosome CDS462257 1740 - 0.647701
NA Rfer_1956 protein of unknown function DUF6, transmembranechromosome CDS2099426 957 - 0.580982
NA Rfer_0511 Glycogen/starch/alpha-glucan phosphorylasechromosome CDS529864 2448 - 0.595588
NA Rfer_2163 Alpha,alpha-trehalose-phosphate synthase (UDP-forming)chromosome CDS2357346 2232 - 0.615143
NA Rfer_0358 major facilitator superfamily MFS_1chromosome CDS359352 1233 + 0.616383
NA Rfer_0961 KDPG and KHG aldolasechromosome CDS1011895 636 - 0.605346
NA Rfer_3745 protein of unknown function DUF6, transmembranechromosome CDS4177510 897 - 0.662207
NA Rfer_1251 NAD-dependent epimerase/dehydratasechromosome CDS1344920 1104 + 0.501812
NA Rfer_2955 histidine triad (HIT) proteinchromosome CDS3264657 372 + 0.583333
NA Rfer_2879 putative transmembrane proteinchromosome CDS3181442 888 + 0.628378
NA Rfer_0954 extracellular solute-binding protein, family 1chromosome CDS1002799 1194 - 0.572864
NA Rfer_3677 transcriptional regulator, DeoR familychromosome CDS4097007 765 + 0.613072
NA Rfer_4176 major facilitator superfamily MFS_1chromosome CDS4645914 1278 + 0.606416
NA Rfer_0816 Phosphoglycerate mutasechromosome CDS851337 639 + 0.674491
NA Rfer_2679 polysaccharide biosynthesis protein CapDchromosome CDS2947642 1944 + 0.602366
NA Rfer_2084 polysaccharide deacetylasechromosome CDS2259054 750 + 0.570667
NA Rfer_1945 Twin-arginine translocation pathway signalchromosome CDS2088235 957 - 0.656217
NA Rfer_0451 NAD-dependent epimerase/dehydratasechromosome CDS456764 1056 - 0.641098
NA Rfer_2570 Twin-arginine translocation pathway signalchromosome CDS2831179 1092 + 0.622711
NA Rfer_2168 conserved hypothetical proteinchromosome CDS2363564 684 - 0.611111
NA Rfer_0205 Pyruvate kinasechromosome CDS203470 1431 - 0.614256
NA Rfer_0513 Glucose-1-phosphate adenylyltransferasechromosome CDS533824 1272 - 0.595912
NA Rfer_4191 major facilitator superfamily MFS_1chromosome CDS4660796 1146 + 0.625654
NA Rfer_1127 Glucose-6-phosphate isomerasechromosome CDS1210419 1569 + 0.629063
NA Rfer_1080 protein of unknown function DUF6, transmembranechromosome CDS1154951 903 + 0.650055
NA Rfer_2329 Hydroxypyruvate reductasechromosome CDS2557778 1299 - 0.643572
NA Rfer_2690 NAD-dependent epimerase/dehydratasechromosome CDS2960830 960 - 0.622917
NA Rfer_2513 major facilitator superfamily MFS_1chromosome CDS2775357 1182 + 0.642132
NA Rfer_0963 PfkBchromosome CDS1013453 927 - 0.610572
NA Rfer_2443 major facilitator superfamily MFS_1chromosome CDS2689645 1446 + 0.571923
NA Rfer_1894 major facilitator superfamily MFS_1chromosome CDS2033035 1188 - 0.616162
NA Rfer_0486 protein of unknown function DUF6, transmembranechromosome CDS502253 939 - 0.661342
NA Rfer_2892 Inositol-1(or 4)-monophosphatasechromosome CDS3194091 903 + 0.620155
NA Rfer_2156 Malto-oligosyltrehalose synthasechromosome CDS2340122 5112 - 0.663537
NA Rfer_0515 Glycogen debranching enzyme GlgXchromosome CDS536665 2220 - 0.642342
NA Rfer_3738 transcriptional regulator, DeoR familychromosome CDS4170817 801 + 0.610487
NA Rfer_1804 putative citrate lyase beta subunitchromosome CDS1941784 1065 + 0.589671
NA Rfer_0443 Hydroxypyruvate isomerasechromosome CDS449277 798 - 0.651629
NA Rfer_0124 ABC transporter relatedchromosome CDS127875 1494 - 0.538153
NA Rfer_1309 phosphoglycerate mutase 1 familychromosome CDS1402325 744 - 0.63172
NA Rfer_0514 4-alpha-glucanotransferasechromosome CDS535130 1539 - 0.623782
NA Rfer_1391 Ribulose-bisphosphate carboxylasechromosome CDS1502903 1380 - 0.614493
NA Rfer_3002 protein of unknown function DUF6, transmembranechromosome CDS3309828 897 + 0.649944
NA Rfer_2191 phosphoenolpyruvate synthasechromosome CDS2390483 2400 + 0.571667
NA Rfer_1984 protein of unknown function UPF0031chromosome CDS2138826 1464 - 0.681694
NA Rfer_1516 Drug resistance transporter EmrB/QacA subfamilychromosome CDS1633008 1584 + 0.611742
NA Rfer_3750 L-fuculose-phosphate aldolasechromosome CDS4182071 684 - 0.600877
NA Rfer_1101 binding-protein-dependent transport systems inner membrane componentchromosome CDS1179749 813 + 0.624846
NA Rfer_0088 Pyruvate, phosphate dikinasechromosome CDS88705 2796 - 0.600858
NA Rfer_0438 periplasmic binding protein/LacI transcriptional regulatorchromosome CDS443711 996 - 0.561245
NA Rfer_2138 protein of unknown function DUF6, transmembranechromosome CDS2320007 843 + 0.618031
NA Rfer_1904 PfkBchromosome CDS2044467 1011 + 0.638971
NA Rfer_4033 6-phosphogluconate dehydrogenase related proteinchromosome CDS4496083 1029 + 0.685131
NA Rfer_3129 ABC transporter relatedchromosome CDS3467524 1515 + 0.615842
NA Rfer_1104 glycoside hydrolase, family 5chromosome CDS1183095 1407 + 0.583511
NA Rfer_1484 TRAP dicarboxylate transporter, DctP subunitchromosome CDS1596298 1047 - 0.631328
NA Rfer_3773 major facilitator superfamily MFS_1chromosome CDS4212653 1251 - 0.632294
NA Rfer_4034 glucose-6-phosphate 1-dehydrogenasechromosome CDS4497119 1419 + 0.663143
NA Rfer_1902 inner-membrane translocatorchromosome CDS2042213 960 - 0.616667
NA Rfer_3659 major facilitator superfamily MFS_1chromosome CDS4077067 1221 + 0.599509
NA Rfer_0450 TRAP dicarboxylate transporter, DctP subunitchromosome CDS455735 972 - 0.570988
NA Rfer_1285 Twin-arginine translocation pathway signalchromosome CDS1377854 852 - 0.585681
NA Rfer_2158 Glycogen debranching enzyme GlgXchromosome CDS2347090 2160 - 0.61713
NA Rfer_0439 inner-membrane translocatorchromosome CDS444751 999 - 0.602603
NA Rfer_1901 ABC transporter relatedchromosome CDS2041416 798 - 0.619048
NA Rfer_3674 binding-protein-dependent transport systems inner membrane componentchromosome CDS4093806 894 - 0.581656
NA Rfer_0603 Phosphoenolpyruvate-protein phosphotransferasechromosome CDS627755 1776 + 0.621059
NA Rfer_0186 major facilitator superfamily MFS_1chromosome CDS183947 1272 + 0.643082
NA Rfer_0487 major facilitator superfamily MFS_1chromosome CDS503163 1284 - 0.606698
NA Rfer_0434 major facilitator superfamily MFS_1chromosome CDS439184 1326 - 0.65083
NA Rfer_1287 extracellular solute-binding protein, family 1chromosome CDS1379613 1308 - 0.581804
NA Rfer_0953 binding-protein-dependent transport systems inner membrane componentchromosome CDS1001759 879 - 0.574516
NA Rfer_1241 2-dehydro-3-deoxyglucarate aldolasechromosome CDS1336671 780 + 0.502564
NA Rfer_2727 L-sorbosone dehydrogenasechromosome CDS3008645 1317 + 0.65224
NA Rfer_3690 Phosphoglycerate kinasechromosome CDS4121854 1194 - 0.624791
NA Rfer_3732 Phosphoglycerate mutasechromosome CDS4163093 669 + 0.617339
NA Rfer_2246 protein of unknown function DUF6, transmembranechromosome CDS2460113 903 + 0.614618