TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-19 00:25:58

Gene list

Applied filters:

COG category: Carbohydrate transport and metabolism
Organism: Shewanella oneidensis MR-1, MR-1

Number of genes found: 134

Free access
Sort by:

 

Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
SO0087 hypothetical protein chromosome CDS97161 561 + 0.486631
SO0296 integral membrane domain proteinSubName: Full=10 TMS drug/metabolite efflux pump (DME) family; chromosome CDS302102 924 + 0.462121
SO0320 conserved domain protein chromosome CDS326595 1008 + 0.402778
SO0365 conserved hypothetical proteinSubName: Full=Transport protein MFS superfamily; chromosome CDS375687 1425 + 0.516491
SO0450 major facilitator family proteinSubName: Full=Transporter MFS superfamily; chromosome CDS477300 1164 - 0.49055
SO0525 drug resistance transporter, EmrB/QacA family proteinSubName: Full=Multidrug efflux pump permease component RmrB; chromosome CDS548245 1620 + 0.499383
SO0539 transporter, putativeSubName: Full=Transport protein MFS superfamily; chromosome CDS558328 1263 + 0.497229
SO0550 hypothetical protein chromosome CDS572159 420 - 0.461905
SO0749 conserved hypothetical proteinSubName: Full=Phosphoglycerate mutase family protein; chromosome CDS766254 594 + 0.456229
SO0890 hypothetical protein chromosome CDS919310 765 + 0.379085
SO0998 hypothetical protein chromosome CDS1029674 180 + 0.277778
SO1031 alpha-ribazole-5'-phosphate phosphatase, putativeSubName: Full=Alpha-ribazole-5-phosphate phosphatase CobC; EC=3.1.3.73; chromosome CDS1070755 750 + 0.556
SO1053 conserved hypothetical proteinSubName: Full=Phosphoenolpyruvate/pyruvate domain superfamily protein; chromosome CDS1091257 849 + 0.47232
SO1069 conserved hypothetical protein chromosome CDS1109339 228 + 0.372807
SO1086 hypothetical protein chromosome CDS1125513 600 - 0.451667
SO1091 membrane protein, putativeSubName: Full=10 TMS drug/metabolite efflux pump (DME) family; chromosome CDS1129590 891 - 0.455668
SO1125 integral membrane domain proteinSubName: Full=10 TMS drug/metabolite efflux pump (DME) family; chromosome CDS1167521 921 - 0.451683
SO1365 hypothetical proteinSubName: Full=Predicted membrane protein; chromosome CDS1421173 336 + 0.410714
SO1389 ROK family proteinSubName: Full=ROK family protein; chromosome CDS1446733 795 + 0.45283
SO1410 hypothetical protein chromosome CDS1466543 729 - 0.459534
SO1496 glycogen phosphorylase family proteinRecName: Full=Phosphorylase; EC=2.4.1.1; chromosome CDS1564763 2514 + 0.492045
SO1569 integral membrane domain proteinSubName: Full=10 TMS drug/metabolite efflux pump (DME) family; chromosome CDS1644891 852 - 0.434272
SO1656 ROK family proteinSubName: Full=D-hexose 6-phosphotransferase HexA; EC=2.7.1.1; chromosome CDS1743565 921 + 0.489685
SO1692 membrane protein, putativeSubName: Full=10 TMS drug/metabolite efflux pump (DME) family; chromosome CDS1779414 906 - 0.46468
SO1745 3-beta hydroxysteroid dehydrogenase/isomerase family proteinSubName: Full=Polyolefin biosynthetic pathway dehydrogenase/isomerase OleD; chromosome CDS1825758 1164 + 0.497423
SO1755 phosphoglucomutase/phosphomannomutase family proteinSubName: Full=Phosphoglucomutase/phosphomannomutase family protein; chromosome CDS1836273 1722 + 0.513937
SO1770 glycerate kinase, putativeSubName: Full=Glycerate kinase GarK; EC=2.7.1.31; chromosome CDS1849618 1155 - 0.536797
SO1771 permease, GntP familySubName: Full=D-glycerate transporter GrtP; chromosome CDS1850831 1359 - 0.497425
SO1917 multidrug resistance protein, putative chromosome CDS2017503 1242 + 0.477456
SO1957 conserved hypothetical proteinSubName: Full=Predicted periplasmic protein; chromosome CDS2063278 1161 + 0.468562
SO2156 alpha amylase family protein chromosome CDS2269782 2022 - 0.468348
SO2158 hypothetical protein chromosome CDS2272228 327 - 0.434251
SO2213 oligo-1,6-glucosidaseSubName: Full=Alpha-glucosidase AlgA; EC=3.2.1.20; chromosome CDS2324798 1623 + 0.473198
SO2280 bicyclomycin resistance proteinSubName: Full=Drug:H+ antiporter DHA1 family; chromosome CDS2392027 1224 - 0.459967
SO2365 conserved hypothetical proteinSubName: Full=Predicted lipoprotein; chromosome CDS2471722 486 + 0.407407
SO2373 drug resistance transporter, Bcr/CflA family proteinSubName: Full=Drug:H+ antiporter DHA1 family; chromosome CDS2477741 1272 - 0.420597
SO2399 conserved hypothetical proteinSubName: Full=Predicted N-acetylglucosaminyl transferase YciM; chromosome CDS2503170 1161 - 0.453919
SO2458 transporter, putativeSubName: Full=Putative maltose transporter MalT; chromosome CDS2574251 1590 + 0.471698
SO2718 conserved hypothetical proteinSubName: Full=Nucleoside sugar transporter DeoT; chromosome CDS2835906 1155 - 0.403463
SO2723 HIT family proteinSubName: Full=Purine nucleoside phosphoramidase HinT; chromosome CDS2839869 357 - 0.501401
SO2762 nagD proteinSubName: Full=Haloacid dehalogenase subfamily IIA associated with N-acetylglucosamine degradation NagD; chromosome CDS2884602 747 + 0.502008
SO2769 conserved hypothetical proteinSubName: Full=Aldose 1-epimerase; EC=5.1.3.3; chromosome CDS2893074 849 + 0.47821
SO2861 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2985205 852 - 0.483568
SO2970 hypothetical protein chromosome CDS3102827 369 - 0.441734
SO3009 hypothetical protein chromosome CDS3124113 279 + 0.336918
SO3047 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3158947 492 - 0.49187
SO3078 major facilitator family protein, putativeSubName: Full=Transporter major facilitator superfamily; chromosome CDS3197219 1170 - 0.505128
SO3135 C4-dicarboxylate transporter, putativeSubName: Full=TRAP-type C4-dicarboxylate:H+ symport system small permease component DctQ; chromosome CDS3264102 660 + 0.436364
SO3171 polysaccharide biosynthesis proteinSubName: Full=Polysaccharide biosynthesis protein epimerase/dehydratase-like WbfY; chromosome CDS3307620 1941 - 0.442555
SO3173 UDP-galactose 4-epimerase, putativeSubName: Full=NAD-dependent epimerase/dehydratase family protein; chromosome CDS3310251 930 - 0.469892
SO3189 polysaccharide biosynthesis proteinSubName: Full=UDP-GlkcNAc C4 epimerase WbpP; EC=5.1.3.7; chromosome CDS3327042 1023 - 0.376344
SO3268 alpha amylase domain proteinSubName: Full=Flagellin modification glycoside hydrolase family 57; chromosome CDS3405080 1917 + 0.446009
SO3271 polysaccharide biosynthesis proteinSubName: Full=Bifunctional UDP GlcNAc C6 dehydratase/C5 epimerase PseB; EC=5.1.3.-; chromosome CDS3409875 996 - 0.456827
SO3333 transporter, putativeSubName: Full=Periplasmic substrate binding protein family 1; chromosome CDS3479321 1446 + 0.454357
SO3485 drug resistance transporter, Bcr/CflA family proteinSubName: Full=Multidrug efflux pump EmrD3; chromosome CDS3634276 1149 - 0.471715
SO3503 glucose/galactose transporterSubName: Full=N-acetyl glucosamine transporter NagP; chromosome CDS3653558 1308 - 0.454128
SO3507 conserved hypothetical proteinSubName: Full=N-acetylglucosamine kinase NagK; EC=2.7.1.59; chromosome CDS3658778 903 - 0.513843
SO3528 hypothetical proteinSubName: Full=Type IV pilin modification protein PilV; chromosome CDS3683128 564 - 0.430851
SO3542 conserved hypothetical proteinSubName: Full=D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Xfp; EC=4.1.2.22; EC=4.1.2.9; chromosome CDS3696497 2367 + 0.43346
SO3714 sugar-binding protein, putativeSubName: Full=ABC-type monosaccharide transport system substrate binding component; chromosome CDS3861384 1011 - 0.400593
SO3793 conserved hypothetical proteinSubName: Full=Cupin 2 conserved barrel domain-containing protein; chromosome CDS3944717 321 - 0.464174
SO3814 ampG protein, putativeSubName: Full=GlcNAc-anhMurNAc permease AmpG; chromosome CDS3965543 1386 + 0.474026
SO3822 conserved hypothetical proteinSubName: Full=Transport protein DMT superfamily; chromosome CDS3972666 873 - 0.461627
SO3868 conserved hypothetical protein chromosome CDS4014629 234 + 0.397436
SO3872 arylsulfate sulfotransferaseSubName: Full=Arylsulfate sulfotransferase AssT; EC=2.8.2.22; chromosome CDS4018056 1791 + 0.376326
SO3887 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4034177 405 + 0.459259
SO3898 L-sorbosone dehydrogenase, putativeSubName: Full=Putative quinoprotein dehydrogenase; chromosome CDS4045632 1176 - 0.454932
SO3933 membrane protein, putativeSubName: Full=Transport protein MFS superfamily; chromosome CDS4077285 1425 + 0.507368
SO4021 transporter, putativeRecName: Full=Multidrug resistance protein MdtL; chromosome CDS4170459 1191 - 0.468514
SO4029 transporter, putativeSubName: Full=Drug:H+ antiporter DHA1 family; chromosome CDS4183245 1368 - 0.470029
SO4040 integral membrane domain protein chromosome CDS4194526 1050 - 0.486667
SO4050 conserved hypothetical proteinSubName: Full=Putative DUF2955 domain transport system permease component; chromosome CDS4202933 1029 - 0.499514
SO4151 polysaccharide deacetylase family proteinSubName: Full=Polysaccharide deacetylase; chromosome CDS4326131 1005 - 0.487562
SO4189 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4358311 462 + 0.426407
SO4194 conserved hypothetical proteinSubName: Full=Glycosyl transferase TIGR00661; EC=2.4.1.-; chromosome CDS4362376 1041 - 0.448607
SO4458 carbohydrate kinase, PfkB familySubName: Full=Carbohydrate kinase PfkB family; chromosome CDS4648354 840 - 0.517857
SO4527 integral membrane domain proteinSubName: Full=10 TMS drug/metabolite efflux pump (DME) family; chromosome CDS4722086 855 - 0.518129
SO4555 drug resistance transporter, Bcr/CflA family proteinSubName: Full=Drug:H+ antiporter DHA1 family; chromosome CDS4751075 1209 - 0.488007
SO4616 polysaccharide deacetylase family proteinSubName: Full=Carbohydrate esterase family 4; EC=3.5.1.-; chromosome CDS4809696 1047 - 0.486151
SO4686 NAD dependent epimerase/dehydratase family proteinSubName: Full=UDP-glucuronate 4-epimerase WcvA; EC=5.1.3.6; chromosome CDS4885039 1008 - 0.489087
SO4742 transcriptional regulator, DeoR familySubName: Full=Glucosamine-6-phosphate sensitive transcriptional repressor of lipopolysaccharide biosyntheis GlmR; chromosome CDS4953274 771 - 0.48249
aqpZ aquaporin Z chromosome CDS1358613 690 - 0.498551
cga glucoamylase chromosome CDS2575975 2544 + 0.495676
crr PTS system, glucose-specific IIA componentSubName: Full=Phosphotransferase system (PTS) glucose-specific IIA component Crr; EC=2.7.1.69; chromosome CDS2352664 510 - 0.437255
dctM C4-dicarboxylate transport proteinSubName: Full=TRAP-type C4-dicarboxylate:H+ symport system large permease component DctM; chromosome CDS3264761 1398 + 0.467811
dctP C4-dicarboxylate-binding periplasmic proteinSubName: Full=TRAP-type C4-dicarboxylate:H+ symport system substrate-binding component DctP; chromosome CDS3263019 1020 + 0.434314
deoB phosphopentomutaseRecName: Full=Phosphopentomutase; EC=5.4.2.7; AltName: Full=Phosphodeoxyribomutase; chromosome CDS1266092 1215 + 0.479012
eda 2-deydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolaseSubName: Full=Bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase Eda; EC=4.1.2.14; EC=4.1.3.16; chromosome CDS2607905 642 - 0.512461
edd 6-phosphogluconate dehydrataseSubName: Full=6-phosphogluconate dehydratase Edd; EC=4.2.1.12; chromosome CDS2608566 1827 - 0.489874
emrD multidrug resistance protein DSubName: Full=Multidrug efflux protein EmrD; chromosome CDS2492556 1245 + 0.481928
eno enolase chromosome CDS3583485 1197 - 0.47619
epd D-erythrose-4-phosphate dehydrogenaseRecName: Full=D-erythrose-4-phosphate dehydrogenase; Short=E4PDH; EC=1.2.1.72; chromosome CDS961739 1017 + 0.489676
fba fructose-bisphosphate aldolase, class II, Calvin cycle subtypeSubName: Full=Fructose-bisphosphate aldolase class II Calvin cycle subtype Fba; EC=4.1.2.13; chromosome CDS964252 1068 + 0.498127
fbp fructose-1,6-bisphosphataseRecName: Full=Fructose-1,6-bisphosphatase class 1; Short=FBPase class 1; EC=3.1.3.11; AltName: Full=D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1; chromosome CDS4129619 978 + 0.50409
galK galactokinaseSubName: Full=Galactokinase GalK; EC=2.7.1.6; chromosome CDS710918 1146 - 0.506108
galM aldose 1-epimeraseRecName: Full=Aldose 1-epimerase; EC=5.1.3.3; AltName: Full=Galactose mutarotase; chromosome CDS709746 1032 - 0.484496
gapA-1 glyceraldehyde 3-phosphate dehydrogenaseSubName: Full=Glyceraldehyde-3-phosphate dehydrogenase (NAD+) GapA; EC=1.2.1.12; chromosome CDS557305 1014 + 0.517751
gapA-2 glyceraldehyde 3-phosphate dehydrogenaseSubName: Full=Glyceraldehyde-3-phosphate dehydrogenase (NAD+) GapA; EC=1.2.1.12; chromosome CDS2452794 1011 - 0.447082
gapA-3 glyceraldehyde 3-phosphate dehydrogenaseSubName: Full=Glyceraldehyde-3-phosphate dehydrogenase GapB; EC=1.2.1.59; chromosome CDS2455113 1434 + 0.459554
glgA glycogen synthaseSubName: Full=Glycogen synthase ADP-glucose transglucosylase GlgA; EC=2.4.1.21; chromosome CDS1568711 1605 + 0.501558
glgB 1,4-alpha-glucan branching enzyme chromosome CDS1560271 2241 + 0.5029
glgC glucose-1-phosphate adenylyltransferaseRecName: Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27; AltName: Full=ADP-glucose pyrophosphorylase; Short=ADPGlc PPase; AltName: Full=ADP-glucose synthase; chromosome CDS1567396 1263 + 0.485352
glgX glycogen operon proteinSubName: Full=Glycogen isoamylase GlgX; EC=3.2.1.-; chromosome CDS1562508 2253 + 0.50111
glmM phosphoglucosamine mutaseRecName: Full=Phosphoglucosamine mutase; EC=5.4.2.10; chromosome CDS1242881 1338 + 0.473842
gmhA phosphoheptose isomeraseRecName: Full=Phosphoheptose isomerase; EC=5.3.1.28; AltName: Full=Sedoheptulose 7-phosphate isomerase; chromosome CDS303607 594 - 0.489899
gnd 6-phosphogluconate dehydrogenase, decarboxylatingRecName: Full=6-phosphogluconate dehydrogenase, decarboxylating; EC=1.1.1.44; chromosome CDS2002046 1527 + 0.482646
gpmA phosphoglycerate mutase, 2,3-bisphosphoglycerate-independentRecName: Full=2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Short=BPG-independent PGAM; Short=Phosphoglyceromutase; Short=iPGM; EC=5.4.2.12; chromosome CDS55600 1545 - 0.510032
gsk inosine-guanosine kinaseSubName: Full=Inosine-guanosine kinase Gsk; EC=2.7.1.73; chromosome CDS2119424 1305 + 0.475096
hex beta-hexosaminidase b precursorSubName: Full=Beta-N-acetylhexosaminidase HexB; EC=3.2.1.52; chromosome CDS3659904 2691 - 0.479376
ilvD dihydroxy-acid dehydrataseRecName: Full=Dihydroxy-acid dehydratase; Short=DAD; EC=4.2.1.9; chromosome CDS4537295 1860 - 0.556989
malQ 4-alpha-glucanotransferaseSubName: Full=4-alpha-glucanotransferase MalQ; EC=2.4.1.25; chromosome CDS1557948 2310 + 0.502597
nagA N-acetylglucosamine-6-phosphate deacetylaseRecName: Full=N-acetylglucosamine-6-phosphate deacetylase; EC=3.5.1.25; AltName: Full=GlcNAc 6-P deacetylase; chromosome CDS3656532 1137 - 0.502199
nagZ beta-hexosaminidaseRecName: Full=Beta-hexosaminidase; EC=3.2.1.52; AltName: Full=Beta-N-acetylhexosaminidase; AltName: Full=N-acetyl-beta-glucosaminidase; chromosome CDS2364234 1029 + 0.484937
pgi glucose-6-phosphate isomeraseRecName: Full=Glucose-6-phosphate isomerase; Short=GPI; EC=5.3.1.9; AltName: Full=Phosphoglucose isomerase; Short=PGI; AltName: Full=Phosphohexose isomerase; Short=PHI; chromosome CDS3704079 1638 + 0.445055
pgk phosphoglycerate kinaseRecName: Full=Phosphoglycerate kinase; EC=2.7.2.3; chromosome CDS962889 1176 + 0.503401
pgl 6-phosphogluconolactonaseSubName: Full=6-phosphogluconolactonase Pgl; EC=3.1.1.31; chromosome CDS2610405 699 - 0.497854
pgm phosphoglucomutase, alpha-D-glucose phosphate-specificSubName: Full=Phosphoglucomutase alpha-D-glucose phosphate-specific Pgm; EC=5.4.2.2; chromosome CDS2442654 1653 + 0.491228
ppsA phosphoenolpyruvate synthaseRecName: Full=Phosphoenolpyruvate synthase; Short=PEP synthase; EC=2.7.9.2; AltName: Full=Pyruvate, water dikinase; chromosome CDS2779864 2370 - 0.472152
prpB methylisocitrate lyaseRecName: Full=Methylisocitrate lyase; EC=4.1.3.30; chromosome CDS351590 879 - 0.511945
ptsG PTS system, glucose-specific IIBC componentSubName: Full=Phosphotransferase system (PTS) glucose-specific IIBC component PtsG; EC=2.7.1.69; chromosome CDS1704116 1500 + 0.486
ptsH phosphocarrier protein HPrSubName: Full=Phosphotransferase system (PTS) phosphocarrier protein HPr PtsH; chromosome CDS2354978 258 - 0.449612
ptsI phosphoenolpyruvate-protein phosphotransferaseRecName: Full=Phosphoenolpyruvate-protein phosphotransferase; EC=2.7.3.9; AltName: Full=Phosphotransferase system, enzyme I; chromosome CDS2353245 1704 - 0.47007
ptsN nitrogen regulatory IIA proteinSubName: Full=Phosphotransferase system (PTS) sugar-specific IIA component PtsN; EC=2.7.1.-; chromosome CDS4103897 444 + 0.472973
ptsO phosphocarrier protein NPRSubName: Full=Phosphotransferase system (PTS) phosphohisitinoprotein-hexose phosphotransferase comonent PtsO; chromosome CDS4105178 276 + 0.521739
pykA pyruvate kinase IIRecName: Full=Pyruvate kinase; EC=2.7.1.40; chromosome CDS2613936 1440 + 0.483333
rbsK ribokinaseSubName: Full=Ribokinase RbsK; EC=2.7.1.15; chromosome CDS821797 912 - 0.530702
rpe ribulose-phosphate 3-epimeraseRecName: Full=Ribulose-phosphate 3-epimerase; EC=5.1.3.1; chromosome CDS298606 678 + 0.469027
rpiA ribose 5-phosphate isomeraseRecName: Full=Ribose-5-phosphate isomerase A; EC=5.3.1.6; AltName: Full=Phosphoriboisomerase A; Short=PRI; chromosome CDS1194143 660 - 0.472727
suhB extragenic suppressor protein SuhBSubName: Full=Inositol-phosphate phosphatase SuhB; EC=3.1.3.25; chromosome CDS2375506 804 - 0.461443
tal transaldolaseRecName: Full=Transaldolase; EC=2.2.1.2; chromosome CDS3703102 957 + 0.428422
tkt transketolaseSubName: Full=Transketolase Tkt; EC=2.2.1.1; chromosome CDS959616 1995 + 0.502256
torT periplasmic protein TorTSubName: Full=Periplasmic component of the TorRS TMAO sensory system TorT; chromosome CDS1276935 1080 - 0.486111
tpiA triosephosphate isomeraseRecName: Full=Triosephosphate isomerase; Short=TIM; EC=5.3.1.1; AltName: Full=Triose-phosphate isomerase; chromosome CDS1244412 783 + 0.463602
zwf glucose-6-phosphate 1-dehydrogenaseRecName: Full=Glucose-6-phosphate 1-dehydrogenase; Short=G6PD; EC=1.1.1.49; chromosome CDS2611113 1473 - 0.4759