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2024-05-05 15:47:48

Gene list

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COG category: Carbohydrate transport and metabolism
Organism: Shewanella oneidensis MR-1, MR-1

Number of genes found: 134

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
SO0087 hypothetical proteinchromosome CDS97161 561 + 0.486631
SO0296 integral membrane domain proteinchromosome CDS302102 924 + 0.462121
SO0320 conserved domain proteinchromosome CDS326595 1008 + 0.402778
SO0365 conserved hypothetical proteinchromosome CDS375687 1425 + 0.516491
SO0450 major facilitator family proteinchromosome CDS477300 1164 - 0.49055
SO0525 drug resistance transporter, EmrB/QacA family proteinchromosome CDS548245 1620 + 0.499383
SO0539 transporter, putativechromosome CDS558328 1263 + 0.497229
SO0550 hypothetical proteinchromosome CDS572159 420 - 0.461905
SO0749 conserved hypothetical proteinchromosome CDS766254 594 + 0.456229
SO0890 hypothetical proteinchromosome CDS919310 765 + 0.379085
SO0998 hypothetical proteinchromosome CDS1029674 180 + 0.277778
SO1031 alpha-ribazole-5'-phosphate phosphatase, putativechromosome CDS1070755 750 + 0.556
SO1053 conserved hypothetical proteinchromosome CDS1091257 849 + 0.47232
SO1069 conserved hypothetical proteinchromosome CDS1109339 228 + 0.372807
SO1086 hypothetical proteinchromosome CDS1125513 600 - 0.451667
SO1091 membrane protein, putativechromosome CDS1129590 891 - 0.455668
SO1125 integral membrane domain proteinchromosome CDS1167521 921 - 0.451683
SO1365 hypothetical proteinchromosome CDS1421173 336 + 0.410714
SO1389 ROK family proteinchromosome CDS1446733 795 + 0.45283
SO1410 hypothetical proteinchromosome CDS1466543 729 - 0.459534
SO1496 glycogen phosphorylase family proteinchromosome CDS1564763 2514 + 0.492045
SO1569 integral membrane domain proteinchromosome CDS1644891 852 - 0.434272
SO1656 ROK family proteinchromosome CDS1743565 921 + 0.489685
SO1692 membrane protein, putativechromosome CDS1779414 906 - 0.46468
SO1745 3-beta hydroxysteroid dehydrogenase/isomerase family proteinchromosome CDS1825758 1164 + 0.497423
SO1755 phosphoglucomutase/phosphomannomutase family proteinchromosome CDS1836273 1722 + 0.513937
SO1770 glycerate kinase, putativechromosome CDS1849618 1155 - 0.536797
SO1771 permease, GntP familychromosome CDS1850831 1359 - 0.497425
SO1917 multidrug resistance protein, putativechromosome CDS2017503 1242 + 0.477456
SO1957 conserved hypothetical proteinchromosome CDS2063278 1161 + 0.468562
SO2156 alpha amylase family proteinchromosome CDS2269782 2022 - 0.468348
SO2158 hypothetical proteinchromosome CDS2272228 327 - 0.434251
SO2213 oligo-1,6-glucosidasechromosome CDS2324798 1623 + 0.473198
SO2280 bicyclomycin resistance proteinchromosome CDS2392027 1224 - 0.459967
SO2365 conserved hypothetical proteinchromosome CDS2471722 486 + 0.407407
SO2373 drug resistance transporter, Bcr/CflA family proteinchromosome CDS2477741 1272 - 0.420597
SO2399 conserved hypothetical proteinchromosome CDS2503170 1161 - 0.453919
SO2458 transporter, putativechromosome CDS2574251 1590 + 0.471698
SO2718 conserved hypothetical proteinchromosome CDS2835906 1155 - 0.403463
SO2723 HIT family proteinchromosome CDS2839869 357 - 0.501401
SO2762 nagD proteinchromosome CDS2884602 747 + 0.502008
SO2769 conserved hypothetical proteinchromosome CDS2893074 849 + 0.47821
SO2861 conserved hypothetical proteinchromosome CDS2985205 852 - 0.483568
SO2970 hypothetical proteinchromosome CDS3102827 369 - 0.441734
SO3009 hypothetical proteinchromosome CDS3124113 279 + 0.336918
SO3047 conserved hypothetical proteinchromosome CDS3158947 492 - 0.49187
SO3078 major facilitator family protein, putativechromosome CDS3197219 1170 - 0.505128
SO3135 C4-dicarboxylate transporter, putativechromosome CDS3264102 660 + 0.436364
SO3171 polysaccharide biosynthesis proteinchromosome CDS3307620 1941 - 0.442555
SO3173 UDP-galactose 4-epimerase, putativechromosome CDS3310251 930 - 0.469892
SO3189 polysaccharide biosynthesis proteinchromosome CDS3327042 1023 - 0.376344
SO3268 alpha amylase domain proteinchromosome CDS3405080 1917 + 0.446009
SO3271 polysaccharide biosynthesis proteinchromosome CDS3409875 996 - 0.456827
SO3333 transporter, putativechromosome CDS3479321 1446 + 0.454357
SO3485 drug resistance transporter, Bcr/CflA family proteinchromosome CDS3634276 1149 - 0.471715
SO3503 glucose/galactose transporterchromosome CDS3653558 1308 - 0.454128
SO3507 conserved hypothetical proteinchromosome CDS3658778 903 - 0.513843
SO3528 hypothetical proteinchromosome CDS3683128 564 - 0.430851
SO3542 conserved hypothetical proteinchromosome CDS3696497 2367 + 0.43346
SO3714 sugar-binding protein, putativechromosome CDS3861384 1011 - 0.400593
SO3793 conserved hypothetical proteinchromosome CDS3944717 321 - 0.464174
SO3814 ampG protein, putativechromosome CDS3965543 1386 + 0.474026
SO3822 conserved hypothetical proteinchromosome CDS3972666 873 - 0.461627
SO3868 conserved hypothetical proteinchromosome CDS4014629 234 + 0.397436
SO3872 arylsulfate sulfotransferasechromosome CDS4018056 1791 + 0.376326
SO3887 conserved hypothetical proteinchromosome CDS4034177 405 + 0.459259
SO3898 L-sorbosone dehydrogenase, putativechromosome CDS4045632 1176 - 0.454932
SO3933 membrane protein, putativechromosome CDS4077285 1425 + 0.507368
SO4021 transporter, putativechromosome CDS4170459 1191 - 0.468514
SO4029 transporter, putativechromosome CDS4183245 1368 - 0.470029
SO4040 integral membrane domain proteinchromosome CDS4194526 1050 - 0.486667
SO4050 conserved hypothetical proteinchromosome CDS4202933 1029 - 0.499514
SO4151 polysaccharide deacetylase family proteinchromosome CDS4326131 1005 - 0.487562
SO4189 conserved hypothetical proteinchromosome CDS4358311 462 + 0.426407
SO4194 conserved hypothetical proteinchromosome CDS4362376 1041 - 0.448607
SO4458 carbohydrate kinase, PfkB familychromosome CDS4648354 840 - 0.517857
SO4527 integral membrane domain proteinchromosome CDS4722086 855 - 0.518129
SO4555 drug resistance transporter, Bcr/CflA family proteinchromosome CDS4751075 1209 - 0.488007
SO4616 polysaccharide deacetylase family proteinchromosome CDS4809696 1047 - 0.486151
SO4686 NAD dependent epimerase/dehydratase family proteinchromosome CDS4885039 1008 - 0.489087
SO4742 transcriptional regulator, DeoR familychromosome CDS4953274 771 - 0.48249
aqpZ aquaporin Zchromosome CDS1358613 690 - 0.498551
cga glucoamylasechromosome CDS2575975 2544 + 0.495676
crr PTS system, glucose-specific IIA componentchromosome CDS2352664 510 - 0.437255
dctM C4-dicarboxylate transport proteinchromosome CDS3264761 1398 + 0.467811
dctP C4-dicarboxylate-binding periplasmic proteinchromosome CDS3263019 1020 + 0.434314
deoB phosphopentomutasechromosome CDS1266092 1215 + 0.479012
eda 2-deydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolasechromosome CDS2607905 642 - 0.512461
edd 6-phosphogluconate dehydratasechromosome CDS2608566 1827 - 0.489874
emrD multidrug resistance protein Dchromosome CDS2492556 1245 + 0.481928
eno enolasechromosome CDS3583485 1197 - 0.47619
epd D-erythrose-4-phosphate dehydrogenasechromosome CDS961739 1017 + 0.489676
fba fructose-bisphosphate aldolase, class II, Calvin cycle subtypechromosome CDS964252 1068 + 0.498127
fbp fructose-1,6-bisphosphatasechromosome CDS4129619 978 + 0.50409
galK galactokinasechromosome CDS710918 1146 - 0.506108
galM aldose 1-epimerasechromosome CDS709746 1032 - 0.484496
gapA-1 glyceraldehyde 3-phosphate dehydrogenasechromosome CDS557305 1014 + 0.517751
gapA-2 glyceraldehyde 3-phosphate dehydrogenasechromosome CDS2452794 1011 - 0.447082
gapA-3 glyceraldehyde 3-phosphate dehydrogenasechromosome CDS2455113 1434 + 0.459554
glgA glycogen synthasechromosome CDS1568711 1605 + 0.501558
glgB 1,4-alpha-glucan branching enzymechromosome CDS1560271 2241 + 0.5029
glgC glucose-1-phosphate adenylyltransferasechromosome CDS1567396 1263 + 0.485352
glgX glycogen operon proteinchromosome CDS1562508 2253 + 0.50111
glmM phosphoglucosamine mutasechromosome CDS1242881 1338 + 0.473842
gmhA phosphoheptose isomerasechromosome CDS303607 594 - 0.489899
gnd 6-phosphogluconate dehydrogenase, decarboxylatingchromosome CDS2002046 1527 + 0.482646
gpmA phosphoglycerate mutase, 2,3-bisphosphoglycerate-independentchromosome CDS55600 1545 - 0.510032
gsk inosine-guanosine kinasechromosome CDS2119424 1305 + 0.475096
hex beta-hexosaminidase b precursorchromosome CDS3659904 2691 - 0.479376
ilvD dihydroxy-acid dehydratasechromosome CDS4537295 1860 - 0.556989
malQ 4-alpha-glucanotransferasechromosome CDS1557948 2310 + 0.502597
nagA N-acetylglucosamine-6-phosphate deacetylasechromosome CDS3656532 1137 - 0.502199
nagZ beta-hexosaminidasechromosome CDS2364234 1029 + 0.484937
pgi glucose-6-phosphate isomerasechromosome CDS3704079 1638 + 0.445055
pgk phosphoglycerate kinasechromosome CDS962889 1176 + 0.503401
pgl 6-phosphogluconolactonasechromosome CDS2610405 699 - 0.497854
pgm phosphoglucomutase, alpha-D-glucose phosphate-specificchromosome CDS2442654 1653 + 0.491228
ppsA phosphoenolpyruvate synthasechromosome CDS2779864 2370 - 0.472152
prpB methylisocitrate lyasechromosome CDS351590 879 - 0.511945
ptsG PTS system, glucose-specific IIBC componentchromosome CDS1704116 1500 + 0.486
ptsH phosphocarrier protein HPrchromosome CDS2354978 258 - 0.449612
ptsI phosphoenolpyruvate-protein phosphotransferasechromosome CDS2353245 1704 - 0.47007
ptsN nitrogen regulatory IIA proteinchromosome CDS4103897 444 + 0.472973
ptsO phosphocarrier protein NPRchromosome CDS4105178 276 + 0.521739
pykA pyruvate kinase IIchromosome CDS2613936 1440 + 0.483333
rbsK ribokinasechromosome CDS821797 912 - 0.530702
rpe ribulose-phosphate 3-epimerasechromosome CDS298606 678 + 0.469027
rpiA ribose 5-phosphate isomerasechromosome CDS1194143 660 - 0.472727
suhB extragenic suppressor protein SuhBchromosome CDS2375506 804 - 0.461443
tal transaldolasechromosome CDS3703102 957 + 0.428422
tkt transketolasechromosome CDS959616 1995 + 0.502256
torT periplasmic protein TorTchromosome CDS1276935 1080 - 0.486111
tpiA triosephosphate isomerasechromosome CDS1244412 783 + 0.463602
zwf glucose-6-phosphate 1-dehydrogenasechromosome CDS2611113 1473 - 0.4759