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2024-05-03 15:39:14

Gene list

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COG category: Carbohydrate transport and metabolism
Organism: Candidatus Pelagibacter ubique HTCC1062, HTCC1062

Number of genes found: 79

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Candidatus Pelagibacter ubique HTCC1062, HTCC1062
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SAR11_1022 Permeases of the drug/metabolite transporter (DMT) superfamilychromosome CDS1000426 813 - 0.344403
NA SAR11_1720 unknown membrane proteinchromosome CDS193953 390 - 0.233333
NA SAR11_1232 conserved hypothetical proteinchromosome CDS1176246 894 - 0.253915
NA SAR11_1724 YGGT familychromosome CDS315020 357 + 0.27451
NA SAR11_0499 probable NADH-ubiquinone oxireductasechromosome CDS486635 969 + 0.285862
NA SAR11_0112 Unknown proteinchromosome CDS123415 489 + 0.259714
NA SAR11_0270 Binding-protein-dependent transport systems inner membrane componentchromosome CDS271429 861 - 0.320558
NA SAR11_0749 ABC transporterchromosome CDS730989 888 + 0.255631
NA SAR11_0769 probable binding protein component of ABC sugar transporterchromosome CDS745724 1260 + 0.384921
NA SAR11_0187 drug/metabolite transporter (dmt superfamily)chromosome CDS187198 885 - 0.309605
NA SAR11_0271 putative ABC transporter solute-binding proteinchromosome CDS272358 1536 - 0.367839
NA SAR11_1015 NAD dependent epimerase/dehydratase fchromosome CDS994615 813 + 0.226322
NA SAR11_0783 inositol monophosphatase familychromosome CDS760746 807 + 0.275093
NA SAR11_0686 Integral membrane protein DUF6chromosome CDS670773 687 + 0.311499
NA SAR11_1185 Integral membrane protein DUF6chromosome CDS1137555 885 + 0.294915
NA SAR11_0770 ABC-type sugar transport systemchromosome CDS747047 873 + 0.323024
NA SAR11_0864 hypothetical proteinchromosome CDS833343 1092 + 0.372711
NA SAR11_1195 probable membrane permease of unknown functionchromosome CDS1145866 1209 - 0.291977
NA SAR11_1280 conserved hypothetical proteinchromosome CDS1212866 852 + 0.300469
NA SAR11_0160 haloacid dehalogenase-like hydrolasechromosome CDS163320 819 - 0.271062
NA SAR11_0260 Transporterchromosome CDS262705 894 - 0.295302
NA SAR11_0296 possible transmembrane proteinchromosome CDS295195 459 + 0.30719
NA SAR11_0665 Integral membrane protein with domain of unknown function DUF6chromosome CDS648881 882 + 0.309524
NA SAR11_0843 D-galactarate dehydratase/Altronatechromosome CDS811791 285 - 0.315789
NA SAR11_1191 possible HIT domainchromosome CDS1143032 405 - 0.246914
NA SAR11_0078 possible NAD dependent epimerase/dehydratase proteinchromosome CDS92500 1020 + 0.321569
NA SAR11_0525 NAD dependent epimerase/dehydratase familychromosome CDS517419 855 + 0.223392
NA SAR11_0972 glycosyl hydrolasechromosome CDS954688 951 + 0.242902
NA SAR11_1367 hypothetical transport proteinchromosome CDS1299633 900 - 0.265556
NA SAR11_1344 Protein of unknown function DUF6chromosome CDS1281350 858 + 0.280886
NA SAR11_0327 Histidine triad (HIT) proteinchromosome CDS324691 366 - 0.29235
NA SAR11_1348 unknown membrane proteinchromosome CDS1284287 1164 - 0.301546
NA SAR11_0435 nucleoside-diphosphate-sugar epimeraseschromosome CDS429007 876 + 0.255708
NA SAR11_0538 UDP-glucose 4 epimerasechromosome CDS531418 939 + 0.250266
NA SAR11_0771 ABC-type sugar transport systemchromosome CDS747909 903 + 0.293466
NA SAR11_0274 major facilitator superfamily transporterchromosome CDS276222 1218 - 0.301314
NA SAR11_0830 probable MFS transporter (Major Facilitator Superfamily)chromosome CDS800522 1221 + 0.307125
ampG SAR11_0213 muropeptide permeasechromosome CDS214052 1377 + 0.33406
apaG SAR11_0834 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolaseschromosome CDS804165 435 + 0.342529
cda1 SAR11_0380 polysaccharide deacetylasechromosome CDS371364 921 - 0.268187
edd SAR11_0774 6-phosphogluconate dehydratasechromosome CDS750690 1776 + 0.345721
eno SAR11_0939 Enolasechromosome CDS925089 1257 + 0.283214
fbaB SAR11_0584 fructose-bisphosphate aldolasechromosome CDS571532 1011 - 0.333333
frk SAR11_0364 fructokinasechromosome CDS355334 930 - 0.305376
gap SAR11_0586 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)chromosome CDS573722 1008 - 0.304563
garD SAR11_0842 probable galactarate dehydratasechromosome CDS810619 1167 - 0.349614
glpX SAR11_1009 glpX-like protein (Fructose-1,6-bisphosphatase related protein)chromosome CDS987578 948 + 0.315401
gmhA SAR11_0545 phosphoheptose isomerase NMA0340chromosome CDS538166 567 + 0.239859
gnl SAR11_0777 gluconolactonasechromosome CDS754086 882 + 0.250567
gpmA SAR11_0193 2,3-bisphosphoglycerate-dependent phosphoglycerate mutasechromosome CDS194401 717 + 0.298466
ilvD SAR11_0961 dihydroxy-acid dehydratasechromosome CDS945366 1719 + 0.365329
malK SAR11_0772 sugar ABC transporterchromosome CDS748813 1101 + 0.291553
manB SAR11_1160 phosphomannomutasechromosome CDS1115724 1455 + 0.305155
manC SAR11_0962 mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferasechromosome CDS947084 1203 + 0.266833
mrsA SAR11_0603 phosphoglucomutase/phosphomannomutase family protein MrsAchromosome CDS589026 1332 + 0.282282
msmX SAR11_0267 ABC sugar transporterchromosome CDS268433 1074 - 0.299814
msmX2 SAR11_0268 ABC sugar transporterchromosome CDS269499 1080 - 0.298148
pgi SAR11_0155 probable glucose-6-phosphate isomerasechromosome CDS157582 1143 - 0.224847
pgk SAR11_0585 phosphoglycerate kinasechromosome CDS572544 1179 - 0.271416
ppdk SAR11_0618 phosphate dikinase (PPDK)chromosome CDS605086 2664 + 0.3247
ppnK SAR11_1132 probable inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)chromosome CDS1087948 780 - 0.253846
prpB SAR11_1155 hypothetical protein prpBchromosome CDS1109959 897 + 0.309922
rfaD SAR11_0572 ADP-L-glycero-D-mannoheptose-6-epimerasechromosome CDS563601 879 + 0.248009
rpe SAR11_0317 Ribulose-phosphate 3-epimerasechromosome CDS315405 660 + 0.280303
rpiB SAR11_1049 ribose-5-phosphate isomerasechromosome CDS1020038 426 - 0.29108
salY SAR11_0696 hypothetical proteinchromosome CDS679765 861 - 0.326365
suhB SAR11_0581 extragenic suppressor protein suhBchromosome CDS569619 741 - 0.310391
tal SAR11_0577 transaldolasechromosome CDS567715 699 + 0.287554
tktB SAR11_0587 Transketolasechromosome CDS574732 1959 - 0.310873
tktN SAR11_0537 transketolasechromosome CDS530587 792 - 0.285354
tpiA SAR11_0927 triosephosphate isomerase (tim)chromosome CDS892423 726 + 0.257576
wcaG SAR11_0571 GDP-fucose synthetase chain Achromosome CDS562663 939 + 0.250266
yajF SAR11_0768 probable NAGC-like transcription regulatorchromosome CDS744621 903 + 0.333333
ycaD SAR11_0695 transporterchromosome CDS678384 1323 - 0.318216
ycjP SAR11_0269 putative ABC transport proteinchromosome CDS270578 849 - 0.314488
ydeD SAR11_0431 Transporterchromosome CDS421222 888 + 0.290541
yliI SAR11_0305 glucose dehydrogenase (pyrroloquinoline-quinone) precursorchromosome CDS301545 1092 + 0.296703
yxkH SAR11_1013 polysaccharide deacetylase-like proteinchromosome CDS992704 711 + 0.223629
yyaM SAR11_0867 hypothetical transport protein yyaMchromosome CDS836512 855 - 0.294737