Gene list
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COG category: Nucleotide transport and metabolism
Organism: Phage Gifsy-1
Number of genes found: 79
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Phage Gifsy-1 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
add | SC1480 | adenosine deaminase | RecName: Full=Adenosine deaminase; EC=3.5.4.4; AltName: Full=Adenosine aminohydrolase; | chromosome | CDS | 1575087 | 1014 | - | 0.554241 |
adk | SC0529 | adenylate kinase | RecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; | chromosome | CDS | 590399 | 645 | + | 0.547287 |
allA | SC0556 | ureidoglycolate hydrolase | SubName: Full=Ureidoglycolate hydrolase; | chromosome | CDS | 620360 | 483 | + | 0.503106 |
allB | SC0562 | allantoinase | RecName: Full=Allantoinase; EC=3.5.2.5; AltName: Full=Allantoin-utilizing enzyme; | chromosome | CDS | 628323 | 1362 | + | 0.515419 |
allP | SC0561 | Putative allantoin permease | SubName: Full=Putative allantoin permease; | chromosome | CDS | 626790 | 1455 | + | 0.45567 |
amn | SC2017 | AMP nucleosidase | SubName: Full=AMP nucleosidase; | chromosome | CDS | 2113048 | 1455 | - | 0.540893 |
apt | SC0524 | adenine phosphoribosyltransferase | RecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; | chromosome | CDS | 584599 | 552 | + | 0.539855 |
carA | SC0060 | carbamoyl-phosphate synthetase, glutamine-hydrolysing small subunit | RecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; | chromosome | CDS | 69959 | 1149 | + | 0.563969 |
carB | SC0061 | carbamoyl-phosphate synthase, large subunit | RecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; | chromosome | CDS | 71126 | 3228 | + | 0.589529 |
cdd | SC2200 | cytidine/deoxycytidine deaminase | RecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA; | chromosome | CDS | 2301680 | 885 | + | 0.563842 |
cmk | SC0934 | cytidine monophosphate (CMP) kinase | RecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; | chromosome | CDS | 1048942 | 684 | + | 0.554094 |
codA | SC3272 | putative cytosine deaminase | SubName: Full=Putative cytosine deaminase; | chromosome | CDS | 3457819 | 1281 | + | 0.555035 |
codB | SC3271 | putative purine-cytosine permease | SubName: Full=Putative purine-cytosine permease; | chromosome | CDS | 3456579 | 1254 | + | 0.555821 |
cpdB | SC4278 | 2':3'-cyclic-nucleotide 2'-phosphodiesterase | SubName: Full=2:3-cyclic-nucleotide 2-phosphodiesterase; | chromosome | CDS | 4577080 | 1944 | - | 0.514918 |
cyaA | SC3840 | adenylate cyclase | RecName: Full=Adenylate cyclase; EC=4.6.1.1; | chromosome | CDS | 4082163 | 2547 | + | 0.546525 |
dcd | SC2123 | dUTPase | RecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; | chromosome | CDS | 2219360 | 582 | - | 0.594502 |
deoA | SC4416 | thymidine phosphorylase | RecName: Full=Thymidine phosphorylase; EC=2.4.2.4; AltName: Full=TdRPase; | chromosome | CDS | 4724535 | 1431 | + | 0.55905 |
deoC | SC4415 | 2-deoxyribose-5-phosphate aldolase | RecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; | chromosome | CDS | 4723722 | 798 | + | 0.542607 |
deoD | SC4418 | purine-nucleoside phosphorylase | RecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; | chromosome | CDS | 4727450 | 720 | + | 0.565278 |
dgt | SC0208 | deoxyguanosine triphosphate triphosphohydrolase | RecName: Full=Deoxyguanosinetriphosphate triphosphohydrolase; Short=dGTP triphosphohydrolase; Short=dGTPase; EC=3.1.5.1; | chromosome | CDS | 238958 | 1518 | + | 0.488801 |
dut | SC3654 | deoxyuridinetriphosphatase | RecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; | chromosome | CDS | 3867019 | 459 | + | 0.553377 |
gmk | SC3664 | guanylate kinase | RecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; | chromosome | CDS | 3875311 | 711 | + | 0.490858 |
gppA | SC3819 | guanosine pentaphosphatase and exopolyphosphatase | RecName: Full=Guanosine-5-triphosphate,3-diphosphate pyrophosphatase; EC=3.6.1.40; AltName: Full=Guanosine pentaphosphate phosphohydrolase; AltName: Full=pppGpp-5-phosphohydrolase; | chromosome | CDS | 4056956 | 1482 | - | 0.55668 |
gpt | SC0318 | guanine-hypoxanthine phosphoribosyltransferase | RecName: Full=Xanthine phosphoribosyltransferase; EC=2.4.2.22; AltName: Full=Xanthine-guanine phosphoribosyltransferase; Short=XGPRT; | chromosome | CDS | 366641 | 459 | + | 0.53159 |
guaA | SC2508 | GMP synthetase | RecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; | chromosome | CDS | 2643546 | 1578 | - | 0.564005 |
guaC | SC0140 | GMP reductase | RecName: Full=GMP reductase; EC=1.7.1.7; AltName: Full=Guanosine 5-monophosphate oxidoreductase; Short=Guanosine monophosphate reductase; | chromosome | CDS | 160111 | 1044 | + | 0.529693 |
hit | SC3111 | putative diadenosine tetraphosphate (Ap4A) hydrolase | SubName: Full=Putative diadenosine tetraphosphate (Ap4A) hydrolase; | chromosome | CDS | 3288690 | 456 | + | 0.47807 |
hpt | SC0170 | hypoxanthine phosphoribosyltransferase | SubName: Full=Hypoxanthine phosphoribosyltransferase; | chromosome | CDS | 196890 | 573 | + | 0.490401 |
miaE | SC4326 | hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA | SubName: Full=Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; | chromosome | CDS | 4627298 | 813 | + | 0.546125 |
ndk | SC2523 | nucleoside diphosphate kinase | RecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; | chromosome | CDS | 2680750 | 432 | - | 0.553241 |
nrdA | SC2280 | ribonucleoside diphosphate reductase 1, alpha subunit | RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; | chromosome | CDS | 2395682 | 2286 | + | 0.534558 |
nrdB | SC2281 | ribonucleoside-diphosphate reductase 1, beta subunit | SubName: Full=Ribonucleoside-diphosphate reductase 1, beta subunit; | chromosome | CDS | 2398080 | 1131 | + | 0.520778 |
nrdD | SC4307 | anaerobic ribonucleoside-triphosphate reductase | SubName: Full=Anaerobic ribonucleoside-triphosphate reductase; | chromosome | CDS | 4607159 | 2139 | - | 0.552595 |
nrdE | SC2741 | ribonucleoside diphosphate reductase 2, alpha subunit | RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; | chromosome | CDS | 2907165 | 2145 | + | 0.539394 |
nrdF | SC2742 | ribonucleoside-diphosphate reductase 2, beta subunit | RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; | chromosome | CDS | 2909320 | 960 | + | 0.496875 |
nrdI | SC2740 | stimulates ribonucleotide reduction | RecName: Full=Protein NrdI; | chromosome | CDS | 2906782 | 411 | + | 0.574209 |
nucA | SC1351 | putative DNA/RNA non-specific endonuclease | SubName: Full=Putative DNA/RNA non-specific endonuclease; | chromosome | CDS | 1447194 | 855 | + | 0.507602 |
nupC | SC2412 | NUP family, nucleoside transport | SubName: Full=NUP family, nucleoside transport; | chromosome | CDS | 2541030 | 1203 | + | 0.504572 |
pfs | SC0207 | 5'-methylthioadenosine/S-adenosylhomocysteinenuc leosidase | RecName: Full=5-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Short=MTA/SAH nucleosidase; Short=MTAN; EC=3.2.2.9; AltName: Full=5-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase; | chromosome | CDS | 238175 | 699 | - | 0.569385 |
ppx | SC2499 | exopolyphosphatase | SubName: Full=Exopolyphosphatase; | chromosome | CDS | 2634375 | 1470 | + | 0.540136 |
prsA | SC1774 | phosphoribosylpyrophosphate synthetase | RecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; | chromosome | CDS | 1890675 | 1014 | + | 0.543392 |
pucJ | SC3562 | putative xanthine permease | SubName: Full=Putative xanthine permease; | chromosome | CDS | 3767380 | 1326 | - | 0.548265 |
purA | SC4242 | adenylosuccinate synthetase | RecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; | chromosome | CDS | 4543797 | 1299 | + | 0.539646 |
purB | SC1183 | adenylosuccinate lyase | SubName: Full=Adenylosuccinate lyase; | chromosome | CDS | 1300851 | 1371 | - | 0.514223 |
purC | SC2482 | phosphoribosylaminoimidazole-succinocarboxamide synthetase (SAICAR synthetase) | RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; | chromosome | CDS | 2615994 | 714 | - | 0.519608 |
purD | SC4056 | phosphoribosylglycinamide synthetase (GAR synthetase) | RecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; | chromosome | CDS | 4324776 | 1251 | - | 0.61231 |
purE | SC0573 | phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit | RecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; | chromosome | CDS | 641466 | 510 | - | 0.601961 |
purF | SC2364 | amidophosphoribosyltransferase (PRPP amidotransferase) | RecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; | chromosome | CDS | 2488746 | 1518 | - | 0.534914 |
purG | SC2560 | phosphoribosylformylglycinamidine synthetase | RecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; | chromosome | CDS | 2728716 | 3888 | - | 0.592335 |
purK | SC0572 | phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit | SubName: Full=Phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit; | chromosome | CDS | 640402 | 1068 | - | 0.592697 |
purM | SC2496 | phosphoribosylaminoimidazole synthetase (AIR synthetase) | RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; | chromosome | CDS | 2630368 | 1038 | + | 0.552987 |
purN | SC2497 | polyphosphate kinase, component of RNA degradosome | SubName: Full=Polyphosphate kinase, component of RNA degradosome; | chromosome | CDS | 2631405 | 639 | + | 0.558685 |
purT | SC1888 | phosphoribosylglycinamide formyltransferase 2 | RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; | chromosome | CDS | 1996923 | 1179 | + | 0.56743 |
purU | SC1751 | formyltetrahydrofolate hydrolase | SubName: Full=Formyltetrahydrofolate hydrolase; | chromosome | CDS | 1864627 | 909 | + | 0.509351 |
pyrB | SC4315 | aspartate carbamoyltransferase, catalytic subunit | RecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; | chromosome | CDS | 4617923 | 936 | - | 0.548077 |
pyrC | SC1111 | dihydro-orotase | RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; | chromosome | CDS | 1228568 | 1047 | - | 0.540592 |
pyrD | SC1011 | dihydro-orotate oxidase | RecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; | chromosome | CDS | 1127574 | 1011 | + | 0.477745 |
pyrE | SC3656 | orotate phosphoribosyltransferase | RecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; | chromosome | CDS | 3868259 | 642 | - | 0.542056 |
pyrF | SC1702 | orotidine-5'-phosphate decarboxylase | RecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; | chromosome | CDS | 1813718 | 738 | - | 0.566396 |
pyrG | SC2887 | CTP synthetase | RecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; | chromosome | CDS | 3052183 | 1638 | - | 0.523199 |
pyrH | SC0218 | uridylate kinase | RecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; | chromosome | CDS | 252265 | 726 | + | 0.53719 |
pyrI | SC4314 | aspartate carbamoyltransferase, regulatory subunit (allosteric regulation) | RecName: Full=Aspartate carbamoyltransferase regulatory chain; | chromosome | CDS | 4617449 | 462 | - | 0.487013 |
rihC | SC0045 | putative purine nucleoside hydrolase | RecName: Full=Non-specific ribonucleoside hydrolase RihC; EC=3.2.-.-; AltName: Full=Purine/pyrimidine ribonucleoside hydrolase; | chromosome | CDS | 54418 | 921 | + | 0.565689 |
tdk | SC1745 | thymidine kinase | RecName: Full=Thymidine kinase; EC=2.7.1.21; | chromosome | CDS | 1859129 | 618 | - | 0.487055 |
thyA | SC2940 | thymidylate synthetase | RecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; | chromosome | CDS | 3117710 | 795 | - | 0.516981 |
tmk | SC1150 | thymidylate kinase | RecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; | chromosome | CDS | 1264997 | 642 | + | 0.577882 |
udk | SC2124 | uridine/cytidine kinase | RecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; | chromosome | CDS | 2220032 | 642 | - | 0.468847 |
udp | SC3866 | uridine phosphorylase | RecName: Full=Uridine phosphorylase; EC=2.4.2.3; | chromosome | CDS | 4109096 | 762 | + | 0.564304 |
upp | SC2495 | uracil phosphoribosyltransferase | RecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; | chromosome | CDS | 2629329 | 627 | - | 0.53748 |
uraA | SC2494 | NCS2 family, uracil transport protein | SubName: Full=NCS2 family, uracil transport protein; | chromosome | CDS | 2627952 | 1290 | - | 0.55969 |
ushA | SC0536 | UDP-sugar hydrolase 5'-nucleotidase | SubName: Full=UDP-sugar hydrolase 5-nucleotidase; | chromosome | CDS | 597992 | 1653 | + | 0.518451 |
xapA | SC2420 | xanthosine phosphorylase (purine nucleoside phosphorylase) | RecName: Full=Purine nucleoside phosphorylase; EC=2.4.2.1; AltName: Full=Inosine-guanosine phosphorylase; | chromosome | CDS | 2550459 | 834 | - | 0.531175 |
ybbY | SC0563 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 629743 | 1299 | + | 0.515012 |
ybeK | SC0689 | putative purine nucleoside hydrolase | RecName: Full=Pyrimidine-specific ribonucleoside hydrolase RihA; EC=3.2.-.-; AltName: Full=Cytidine/uridine-specific hydrolase; | chromosome | CDS | 768093 | 936 | - | 0.57906 |
ycfF | SC1155 | putative protein kinase C inhibitor | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1271759 | 378 | + | 0.497355 |
yfeJ | SC2435 | putative GMP synthase-glutamine amidotransferase domain | SubName: Full=Putative GMP synthase-glutamine amidotransferase domain; | chromosome | CDS | 2565561 | 720 | + | 0.551389 |
yfhC | SC2563 | putative Cytosine/adenosine deaminase | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome | CDS | 2734454 | 552 | - | 0.563406 |
yggV | SC3043 | putative Xanthosine triphosphate pyrophosphatase | RecName: Full=dITP/XTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-canonical purine NTP pyrophosphatase; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; | chromosome | CDS | 3222019 | 594 | + | 0.550505 |
yicE | SC3671 | putative NCS2 family, purine/xanthine transport protein | SubName: Full=Putative NCS2 family, purine/xanthine transport protein; | chromosome | CDS | 3883552 | 1392 | + | 0.572557 |