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2024-05-15 02:40:10

Gene list

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COG category: Nucleotide transport and metabolism
Organism: Lactobacillus sakei subsp. sakei 23K, 23K

Number of genes found: 78

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Lactobacillus sakei subsp. sakei 23K, 23K
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA LSA1211 Putative cytosine:cation symporter (N-terminal fragment), authentic frameshitSubName: Full=Putative cytosine:cation symporter (N-terminal), authentic frameshit; chromosome CDS1194104 753 - 0.446215
NA LSA0628 Putative diadenosine polyphosphate hydrolaseSubName: Full=Putative diadenosine polyphosphate hydrolase; chromosome CDS631277 429 - 0.433566
NA LSA1210 Putative cytosine:cation symporter (C-terminal fragment), authentic frameshiftSubName: Full=Putative cytosine:cation symporter (C-terminal), authentic frameshift; chromosome CDS1193498 591 - 0.416244
NA LSA0508 Putative nucleoside deoxyribosyltransferaseSubName: Full=Putative nucleoside deoxyribosyltransferase; EC=2.4.2.6; chromosome CDS527101 471 + 0.416136
NA LSA0259 Pyrimidine-specific nucleoside symporterSubName: Full=Pyrimidine-specific nucleoside symporter; chromosome CDS254195 1191 + 0.353484
NA LSA0287 Pyrimidine-specific nucleoside symporterSubName: Full=Pyrimidine-specific nucleoside symporter; chromosome CDS284050 1236 + 0.391586
NA LSA1847 Hypothetical integral membrane proteinSubName: Full=Hypothetical integral membrane protein; chromosome CDS1837627 561 - 0.360071
NA LSA0430 Putative nucleotide phosphoesteraseSubName: Full=Putative nucleotide phosphoesterase; chromosome CDS438277 1380 + 0.444928
NA LSA1213 Cytosine deaminase (C-terminal fragment), authentic frameshiftSubName: Full=Cytosine deaminase (C-terminal), authentic frameshift; EC=3.5.4.1; chromosome CDS1195963 339 + 0.445428
NA LSA1651 Putative purine phosphoribosyltransferase, PRT familySubName: Full=Putative purine phosphoribosyltransferase, PRT family; chromosome CDS1635725 837 - 0.414576
NA LSA0023 Putative ribonucleotide reductase (NrdI-like)SubName: Full=Putative ribonucleotide reductase (NrdI-like); chromosome CDS23990 468 - 0.438034
NA LSA0055 Putative thiamine/thiamine precursor:cation symporterSubName: Full=Putative thiamine/thiamine:cation symporter; chromosome CDS51132 1167 - 0.425021
NA LSA0013 Putative nucleobase: cation symporterSubName: Full=Putative nucleobase: cation symporter; chromosome CDS15068 1341 - 0.448173
NA LSA0446 Putative dihydroorotate oxidase, catalytic subunitRecName: Full=Dihydroorotate dehydrogenase; Short=DHOD; Short=DHODase; Short=DHOdehase; EC=1.3.-.-; chromosome CDS460281 942 + 0.403397
NA LSA1070 Putative bacterial type II secretion/competence system, DCMP deaminase ComEB-likeSubName: Full=Putative bacterial type II secretion/competence system, DCMP deaminase ComEB-like; chromosome CDS1066113 489 - 0.404908
NA LSA1168 Putative nucleoside deoxyribosyltransferaseSubName: Full=Putative nucleoside deoxyribosyltransferase; EC=2.4.2.6; chromosome CDS1153869 480 + 0.404167
NA LSA0931 Hypothetical integral membrane proteinSubName: Full=Hypothetical integral membrane protein; chromosome CDS920172 747 + 0.386881
NA LSA0798 Pyrimidine-specific nucleoside symporterSubName: Full=Pyrimidine-specific nucleoside symporter; chromosome CDS789448 1230 + 0.388618
NA LSA0335 Putative cytidine deaminaseRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS339299 519 + 0.458574
NA LSA1212 Cytosine deaminase, (N-terminal fragment), authentic frameshiftSubName: Full=Cytosine deaminase, (N-terminal), authentic frameshift; EC=3.5.4.1; chromosome CDS1195067 885 + 0.442938
NA LSA1481 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1457504 471 + 0.437367
add LSA0086 Adenosine deaminaseRecName: Full=Adenine deaminase; Short=ADE; EC=3.5.4.2; AltName: Full=Adenine aminohydrolase; chromosome CDS81314 1020 - 0.435294
adeC1 LSA0088 Adenine deaminaseRecName: Full=Adenine deaminase 1; Short=Adenase 1; Short=Adenine aminase 1; EC=3.5.4.2; chromosome CDS83856 1785 + 0.452101
adeC2 LSA1670 Adenine deaminaseRecName: Full=Adenine deaminase 2; Short=Adenase 2; Short=Adenine aminase 2; EC=3.5.4.2; chromosome CDS1652877 1743 + 0.468158
adk LSA1744 Adenylate kinase (ATP-AMP transphosphorylase)RecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; chromosome CDS1726385 657 - 0.406393
apt LSA1276 Adenine phosphoribosyltransferase (APRT)RecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; chromosome CDS1257177 519 - 0.423892
cmk LSA1018 Cytidylate kinaseRecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; chromosome CDS1008969 660 - 0.410606
deoC LSA0795 2 Deoxyribose-5 phosphate aldolaseRecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; chromosome CDS786849 651 + 0.403994
deoD LSA0797 Purine-nucleoside phosphorylaseRecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; chromosome CDS788722 705 + 0.407092
dgk LSA1805 Deoxyguanosine kinaseSubName: Full=Deoxyguanosine kinase; EC=2.7.1.113; chromosome CDS1795853 663 + 0.386124
dut LSA1684 Deoxyuridine 5'-triphosphataseSubName: Full=Deoxyuridine 5-triphosphatase; EC=3.6.1.23; chromosome CDS1665556 540 - 0.414815
fhs LSA0947 Formate-tetrahydrofolate ligase (Formyltetrahydrofolate synthetase)RecName: Full=Formate--tetrahydrofolate ligase; EC=6.3.4.3; AltName: Full=Formyltetrahydrofolate synthetase; Short=FHS; Short=FTHFS; chromosome CDS933463 1674 + 0.45221
gmk1 LSA0107 Guanylate kinaseSubName: Full=Guanylate kinase; EC=2.7.4.8; chromosome CDS102240 561 + 0.420677
gmk2 LSA0685 Guanylate kinaseRecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; chromosome CDS682257 612 + 0.405229
guaA LSA0139 Guanosine monophosphate synthase (Glutamine amidotransferase)RecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; chromosome CDS132817 1554 + 0.425354
guaC LSA0476 Guanosine 5'-monophosphate reductase (GMP reductase)RecName: Full=GMP reductase; EC=1.7.1.7; AltName: Full=Guanosine 5-monophosphate oxidoreductase; Short=Guanosine monophosphate reductase; chromosome CDS492944 978 - 0.433538
hpt LSA1598 Hypoxanthine phosphoribosyltranferaseSubName: Full=Hypoxanthine phosphoribosyltranferase; EC=2.4.2.8; chromosome CDS1583430 546 - 0.395604
iunH1 LSA0252 Inosine-uridine preferring nucleoside hydrolaseSubName: Full=Inosine-uridine preferring nucleoside hydrolase; EC=3.2.2.1; chromosome CDS247214 936 + 0.446581
iunH2 LSA0533 Inosine-uridine preferring nucleoside hydrolaseSubName: Full=Inosine-uridine preferring nucleoside hydrolase; EC=3.2.2.1; chromosome CDS551808 960 + 0.446875
iunH3 LSA0830 Inosine-uridine preferring nucleoside hydrolaseSubName: Full=Inosine-uridine preferring nucleoside hydrolase; EC=3.2.2.1; chromosome CDS818364 975 - 0.457436
nrdD LSA1459 Anaerobic ribonucleoside-triphosphate reductaseSubName: Full=Anaerobic ribonucleoside-triphosphate reductase; EC=1.17.4.2; chromosome CDS1432875 2217 - 0.40415
nrdE LSA0941 Ribonucleoside-diphosphate reductase, alpha chainRecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS927727 2172 - 0.404696
nrdF LSA0940 Ribonucleoside-diphosphate reductase, beta chainRecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; chromosome CDS926347 957 - 0.37931
pdp LSA0801 Pyrimidine-nucleoside phosphorylaseSubName: Full=Pyrimidine-nucleoside phosphorylase; EC=2.4.2.2; chromosome CDS792975 1299 + 0.423403
pfs LSA0776 Methylthioadenosine nucleosidase (nucleoside phosphorylase)SubName: Full=Methylthioadenosine nucleosidase (Nucleoside phosphorylase); EC=3.2.2.16; chromosome CDS771701 693 + 0.428571
prs LSA1646 Ribose-phosphate diphosphokinase (Phosphoribosyl pyrophosphate synthetase)RecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; chromosome CDS1631162 972 - 0.393004
purA LSA0063 Adenylosuccinate synthetase (IMP-aspartate ligase)RecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; chromosome CDS59513 1281 + 0.416081
purB1 LSA0654 Adenylosuccinate lyaseSubName: Full=Adenylosuccinate lyase; EC=4.3.2.2; chromosome CDS658095 1296 + 0.424383
purB2 LSA1555 Adenylosuccinate lyaseSubName: Full=Adenylosuccinate lyase; EC=4.3.2.2; chromosome CDS1528041 1293 - 0.434648
purC LSA0655 Phospho ribosylaminoimidazole-succinocarboxamide synthaseRecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; chromosome CDS659503 726 + 0.380165
purD LSA0663 Phosphoribosylamine--glycine ligase (Phosphoribosylglycinamide synthetase)RecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; chromosome CDS667952 1251 + 0.498801
purE LSA0652 Phospho ribosylaminoimidazole carboxylase (AIR carboxylase), catalytic subunitRecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; chromosome CDS656478 486 + 0.462963
purF LSA0659 AmidophosphoribosyltransferaseRecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; chromosome CDS663355 1434 + 0.460251
purH LSA0662 Bifunctional protein:phospho ribosylaminoimidazole carboxamide formyltransferase (AICAR transformylase)and IMP cyclohydrolase (inosinicase)RecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; chromosome CDS666405 1533 + 0.445532
purK1 LSA0653 Phospho ribosylaminoimidazole carboxylase (AIR carboxylase), ATPase subunitSubName: Full=Phospho ribosylaminoimidazole carboxylase (AIR carboxylase), ATPase subunit; EC=4.1.1.21; chromosome CDS656947 1152 + 0.453993
purK2 LSA1556 Phospho ribosylaminoimidazole carboxylase (AIR carboxylase), ATPase subunitSubName: Full=Phospho ribosylaminoimidazole carboxylase (AIR carboxylase), ATPase subunit; EC=4.1.1.21; chromosome CDS1529389 1113 - 0.424978
purL LSA0658 Phospho ribosylformylglycinamidine synthase, synthetase domainRecName: Full=Phosphoribosylformylglycinamidine synthase 2; EC=6.3.5.3; AltName: Full=Phosphoribosylformylglycinamidine synthase II; Short=FGAM synthase II; chromosome CDS661154 2226 + 0.449236
purM LSA0660 Phospho ribosylformylglycinamidine cyclo-ligaseRecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; chromosome CDS664794 1029 + 0.460641
purN LSA0661 Phospho ribosylglycinamide formyltransferaseSubName: Full=Phospho ribosylglycinamide formyltransferase; EC=2.1.2.2; chromosome CDS665819 570 + 0.477193
purQ LSA0657 Phospho ribosylformylglycinamidine synthase, glutamine amidotransferase domainRecName: Full=Phosphoribosylformylglycinamidine synthase 1; EC=6.3.5.3; AltName: Full=Phosphoribosylformylglycinamidine synthase I; Short=FGAM synthase I; chromosome CDS660478 687 + 0.458515
purS LSA0656 Phospho ribosylformylglycinamidine synthaseSubName: Full=Phospho ribosylformylglycinamidine synthase; EC=6.3.5.3; chromosome CDS660221 261 + 0.413793
pyrAA LSA0954 Carbamoyl-phosphate synthase, glutaminase subunitRecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; chromosome CDS941011 1077 + 0.449396
pyrAB LSA0955 Carbamoyl-phosphate synthase, catalytic subunitRecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; chromosome CDS942105 3183 + 0.447691
pyrB LSA0952 Aspartate carbamoyltransferase (Asparate transcarbamylase)RecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; chromosome CDS938789 918 + 0.441176
pyrC LSA0953 DihydroorotaseRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS939718 1290 + 0.476744
pyrDB LSA0957 Dihydroorotate oxidase, catalytic subunitRecName: Full=Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit; Short=DHOD B; Short=DHODase B; Short=DHOdehase B; EC=1.3.1.14; AltName: Full=Dihydroorotate oxidase B; AltName: Full=Orotate reductase (NADH); chromosome CDS946183 924 + 0.504329
pyrE LSA0959 Orotate phosphoribosyltransferaseRecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; chromosome CDS947826 639 + 0.475743
pyrF LSA0958 Orotidine-5'-phosphate decarboxylaseRecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; chromosome CDS947110 720 + 0.461111
pyrG LSA1629 Cytidine triphosphate synthaseRecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; chromosome CDS1613960 1593 - 0.396736
pyrH LSA1263 Uridylate kinase (Uridine monophosphate kinase) (UMP kinase)RecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; chromosome CDS1246332 726 - 0.418733
pyrP LSA0951 Uracil:cation symporterSubName: Full=Uracil:cation symporter; chromosome CDS937492 1305 + 0.467433
pyrR LSA0950 Bifunctional protein: uracil phosphoribosyltransferase and pyrimidine operon transcriptional regulatorRecName: Full=Bifunctional protein PyrR; Includes: RecName: Full=Pyrimidine operon regulatory protein; Includes: RecName: Full=Uracil phosphoribosyltransferase; Short=UPRTase; EC=2.4.2.9; chromosome CDS936778 540 + 0.412963
tdk LSA1138 Thymidine kinase (deoxuuridine kinase)RecName: Full=Thymidine kinase; EC=2.7.1.21; chromosome CDS1125569 594 - 0.373737
thyA LSA1001 Thymidylate synthaseRecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; chromosome CDS992134 951 - 0.414301
tmk LSA0340 Thymidylate kinase (dTMP kinase)RecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; chromosome CDS343329 645 + 0.444961
udk LSA1373 Uridine monophosphokinase (Cytidine monophosphokinase)RecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; chromosome CDS1341521 636 - 0.388365
upp LSA1133 Uracil phosphoribosyltransferase (UMP pyrophosphorylase)RecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; chromosome CDS1120440 630 - 0.414286
xpt LSA1557 Xanthine phosphoribosyltransferaseRecName: Full=Xanthine phosphoribosyltransferase; Short=XPRTase; EC=2.4.2.22; chromosome CDS1530643 588 - 0.401361