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2024-05-19 19:31:02

Gene list

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COG category: Nucleotide transport and metabolism
Organism: Shigella sonnei Ss046, Ss046

Number of genes found: 79

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Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SSO_3033 putative proteoglycanSubName: Full=Putative proteoglycan; chromosome CDS3191314 1395 + 0.529032
NA SSO_3036 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3196296 426 + 0.516432
add SSO_1535 adenosine deaminaseRecName: Full=Adenosine deaminase; EC=3.5.4.4; AltName: Full=Adenosine aminohydrolase; chromosome CDS1610111 1002 - 0.535928
adk SSO_0461 adenylate kinaseRecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; chromosome CDS489363 645 + 0.516279
amn SSO_2047 AMP nucleosidaseSubName: Full=AMP nucleosidase; chromosome CDS2146388 1455 - 0.497595
apt SSO_0456 adenine phosphoribosyltransferaseRecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; chromosome CDS483606 552 + 0.541667
carA SSO_0037 carbamoyl-phosphate synthetase, glutamine (small) subunitRecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; chromosome CDS36817 1149 + 0.532637
carB SSO_0038 carbamoyl-phosphate synthase large subunitRecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; chromosome CDS37983 3222 + 0.562384
cdd SSO_2199 cytidine/deoxycytidine deaminaseRecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA; chromosome CDS2304778 885 + 0.548023
cmk SSO_0912 cytidylate kinaseRecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; chromosome CDS976909 684 + 0.533626
cpdB SSO_4398 2':3'-cyclic-nucleotide 2'-phosphodiesteraseSubName: Full=2:3-cyclic-nucleotide 2-phosphodiesterase; chromosome CDS4661629 1944 - 0.494342
cyaA SSO_3978 adenylate cyclaseRecName: Full=Adenylate cyclase; EC=4.6.1.1; chromosome CDS4200291 2547 + 0.521005
dcd SSO_2118 2'-deoxycytidine 5'-triphosphate deaminaseRecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; chromosome CDS2214078 582 - 0.601375
deoA SSO_4533 thymidine phosphorylaseRecName: Full=Thymidine phosphorylase; EC=2.4.2.4; AltName: Full=TdRPase; chromosome CDS4802916 1323 + 0.547997
deoC SSO_4532 2-deoxyribose-5-phosphate aldolaseRecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; chromosome CDS4802010 780 + 0.547436
deoD SSO_4535 purine-nucleoside phosphorylaseRecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; chromosome CDS4805593 720 + 0.527778
dut SSO_3766 deoxyuridinetriphosphataseRecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; chromosome CDS3952718 456 - 0.548246
gmk SSO_3757 guanylate kinaseRecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; chromosome CDS3945050 624 - 0.488782
gppA SSO_3950 guanosine pentaphosphatase; exopolyphosphataseRecName: Full=Guanosine-5-triphosphate,3-diphosphate pyrophosphatase; EC=3.6.1.40; AltName: Full=Guanosine pentaphosphate phosphohydrolase; AltName: Full=pppGpp-5-phosphohydrolase; chromosome CDS4173437 1485 - 0.538047
gpt SSO_0280 guanine-hypoxanthine phosphoribosyltransferaseRecName: Full=Xanthine phosphoribosyltransferase; EC=2.4.2.22; AltName: Full=Xanthine-guanine phosphoribosyltransferase; Short=XGPRT; chromosome CDS308731 459 + 0.51634
guaA SSO_2589 GMP synthetaseRecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; chromosome CDS2734501 1578 - 0.542459
guaC SSO_0112 GMP reductaseRecName: Full=GMP reductase; EC=1.7.1.7; AltName: Full=Guanosine 5-monophosphate oxidoreductase; Short=Guanosine monophosphate reductase; chromosome CDS122671 1044 + 0.51341
hpt SSO_0133 hypoxanthine phosphoribosyltransferaseSubName: Full=Hypoxanthine phosphoribosyltransferase; chromosome CDS150395 549 + 0.504554
ndk SSO_2600 nucleoside diphosphate kinaseRecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; chromosome CDS2747975 432 - 0.530093
nrdA SSO_2293 ribonucleoside diphosphate reductase 1, alpha subunit, B1RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS2418378 2286 + 0.538058
nrdB SSO_2294 ribonucleoside-diphosphate reductase 1, beta subunit, B2SubName: Full=Ribonucleoside-diphosphate reductase 1, beta subunit, B2; chromosome CDS2420897 1131 + 0.507515
nrdD SSO_4419 anaerobic ribonucleoside-triphosphate reductaseSubName: Full=Anaerobic ribonucleoside-triphosphate reductase; chromosome CDS4686975 2139 - 0.538569
nrdE SSO_2820 ribonucleoside-diphosphate reductase 2 alpha subunitRecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS2962464 2145 + 0.523543
nrdF SSO_2821 ribonucleoside-diphosphate reductase 2, beta chain, fragRecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; chromosome CDS2964618 960 + 0.48125
nupC SSO_2485 permease of transport system for 3 nucleosidesSubName: Full=Permease of transport system for 3 nucleosides; chromosome CDS2626978 1203 + 0.496259
pfs SSO_0171 conserved hypothetical proteinRecName: Full=5-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Short=MTA/SAH nucleosidase; Short=MTAN; EC=3.2.2.9; AltName: Full=5-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase; chromosome CDS192598 699 - 0.529328
ppx SSO_2584 exopolyphosphataseSubName: Full=Exopolyphosphatase; chromosome CDS2728656 1542 + 0.514916
prsA SSO_1971 phosphoribosylpyrophosphate synthetaseRecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; chromosome CDS2072881 948 + 0.528481
purA SSO_4362 adenylosuccinate synthetaseRecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; chromosome CDS4631536 1299 + 0.538106
purB SSO_1149 adenylosuccinate lyaseSubName: Full=Adenylosuccinate lyase; chromosome CDS1230639 1371 - 0.527352
purC SSO_2557 phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetaseRecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; chromosome CDS2698958 714 - 0.522409
purD SSO_4178 phosphoribosylglycinamide synthetaseRecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; chromosome CDS4422833 1290 - 0.582171
purE SSO_0495 phosphoribosylaminoimidazole carboxylaseRecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; chromosome CDS524185 510 + 0.580392
purF SSO_2370 amidophosphoribosyltransferaseRecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; chromosome CDS2500489 1518 - 0.527009
purH SSO_4179 phosphoribosylaminoimidazolecarboxamideformyltransferaseRecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; chromosome CDS4424134 1590 - 0.561635
purK SSO_0496 phosphoribosylaminoimidazole carboxylaseSubName: Full=Phosphoribosylaminoimidazole carboxylase; chromosome CDS524691 1068 + 0.564607
purL SSO_2640 phosphoribosylformyl-glycineamide synthetase FGAM synthetaseRecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; chromosome CDS2795630 3888 - 0.569959
purM SSO_2581 phosphoribosylaminoimidazole synthetaseRecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; chromosome CDS2724739 1038 + 0.531792
purN SSO_2582 phosphoribosylglycinamide formyltransferase 1SubName: Full=Phosphoribosylglycinamide formyltransferase 1; chromosome CDS2725776 639 + 0.532081
purT SSO_1299 phosphoribosylglycinamide formyltransferase 2RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; chromosome CDS1376240 1179 - 0.537744
purU SSO_1947 formyltetrahydrofolate deformylase; for purT-dependent FGAR synthesisSubName: Full=Formyltetrahydrofolate deformylase for purT-dependent FGAR synthesis; chromosome CDS2046905 843 + 0.47331
pyrB SSO_4426 aspartate carbamoyltransferase, catalytic subunitRecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; chromosome CDS4697913 936 - 0.537393
pyrC SSO_1082 dihydro-orotaseRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS1162866 1047 - 0.531041
pyrD SSO_0949 dihydro-orotate dehydrogenaseRecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; chromosome CDS1022861 1011 + 0.469832
pyrE SSO_3764 orotate phosphoribosyltransferaseRecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; chromosome CDS3951337 642 + 0.52648
pyrF SSO_1859 orotidine-5'-phosphate decarboxylaseRecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; chromosome CDS1956878 738 - 0.525745
pyrG SSO_2937 CTP synthetaseRecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; chromosome CDS3077756 1638 - 0.517094
pyrH SSO_0183 uridylate kinaseRecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; chromosome CDS206776 726 + 0.527548
pyrI SSO_4425 aspartate carbamoyltransferase, regulatory subunitRecName: Full=Aspartate carbamoyltransferase regulatory chain; chromosome CDS4697439 462 - 0.489177
tdk SSO_1941 thymidine kinaseRecName: Full=Thymidine kinase; EC=2.7.1.21; chromosome CDS2041385 618 - 0.423948
thyA SSO_2984 thymidylate synthetaseRecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; chromosome CDS3133977 795 - 0.510692
tmk SSO_1118 thymidylate kinaseRecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; chromosome CDS1196415 642 + 0.537383
udk SSO_2119 uridine/cytidine kinaseRecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; chromosome CDS2214751 696 - 0.489943
udp SSO_4006 uridine phosphorylaseRecName: Full=Uridine phosphorylase; EC=2.4.2.3; chromosome CDS4233875 762 + 0.538058
upp SSO_2580 uracil phosphoribosyltransferaseRecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; chromosome CDS2723788 654 - 0.533639
uraA SSO_2579 uracil transportSubName: Full=Uracil transport; chromosome CDS2722413 1290 - 0.520155
ushA SSO_P147 UshASubName: Full=UshA; pSS_046 CDS131553 1653 + 0.405324
ushA SSO_0469 UDP-sugar hydrolaseSubName: Full=UDP-sugar hydrolase; chromosome CDS498265 1653 + 0.507562
yaaF SSO_0035 conserved hypothetical proteinRecName: Full=Non-specific ribonucleoside hydrolase RihC; EC=3.2.-.-; AltName: Full=Purine/pyrimidine ribonucleoside hydrolase; chromosome CDS34459 915 + 0.554098
yahJ SSO_0309 putative deaminaseSubName: Full=Putative deaminase; chromosome CDS338064 1383 - 0.562545
ybeK SSO_0605 putative tRNA synthetaseRecName: Full=Pyrimidine-specific ribonucleoside hydrolase RihA; EC=3.2.-.-; AltName: Full=Cytidine/uridine-specific hydrolase; chromosome CDS644768 936 - 0.510684
ycdG SSO_1024 putative transport proteinSubName: Full=Putative transport protein; chromosome CDS1104435 1395 - 0.539785
ycfF SSO_1123 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1203176 360 + 0.505556
yeiJ SSO_2217 putative transport system permease proteinSubName: Full=Putative transport system permease protein; chromosome CDS2325661 1251 - 0.4996
yeiK SSO_2218 conserved hypothetical proteinRecName: Full=Pyrimidine-specific ribonucleoside hydrolase RihB; EC=3.2.2.8; AltName: Full=Cytidine/uridine-specific hydrolase; chromosome CDS2327011 942 - 0.5138
yeiM SSO_2220 putative transport system permease proteinSubName: Full=Putative transport system permease protein; chromosome CDS2328847 1251 - 0.503597
yfhC SSO_2642 putative deaminaseRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS2801328 537 - 0.543762
ygfU SSO_3041 putative permeaseSubName: Full=Putative permease; chromosome CDS3201105 1518 + 0.48419
yggV SSO_3108 putative ribosomal proteinRecName: Full=dITP/XTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-canonical purine NTP pyrophosphatase; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; chromosome CDS3268398 594 + 0.558923
yghR SSO_3220 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3386188 759 + 0.534914
yghS SSO_3219 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3385443 714 + 0.501401
yghT SSO_3130 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3290584 675 + 0.497778
yicE SSO_3751 putative transport proteinSubName: Full=Putative transport protein; chromosome CDS3936765 1392 - 0.551724
yicP SSO_3619 probable adenine deaminaseRecName: Full=Adenine deaminase; Short=Adenase; Short=Adenine aminase; EC=3.5.4.2; chromosome CDS3786982 1767 + 0.546689