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2024-05-26 03:08:25

Gene list

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COG category: Nucleotide transport and metabolism
Organism: Shewanella oneidensis MR-1, MR-1

Number of genes found: 79

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Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
SO0093 NupC family proteinSubName: Full=Na+ dependent nucleoside transporter NupC family; chromosome CDS100974 1221 - 0.394758
SO0302 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS307975 507 - 0.424063
SO0811 inosine-uridine preferring nucleoside hydrolase family proteinRecName: Full=Pyrimidine-specific ribonucleoside hydrolase RihA; EC=3.2.-.-; AltName: Full=Cytidine/uridine-specific hydrolase; chromosome CDS822729 957 - 0.501567
SO1214 NupC family proteinSubName: Full=Na+ dependent nucleoside transporter NupC family; chromosome CDS1260899 1299 + 0.455735
SO1258 adenylosuccinate synthetase, putativeRecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; chromosome CDS1306434 1257 - 0.490056
SO1397 cytosine deaminaseSubName: Full=Cytosine deaminase; EC=3.5.4.1; chromosome CDS1453830 438 - 0.506849
SO1513 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1588140 465 + 0.430108
SO1979 MutT/nudix family proteinSubName: Full=Transcriptional repressor of nicotinamide riboside utilization NrtR; chromosome CDS2083546 714 + 0.446779
SO1980 phosphoribosyl transferase domain proteinSubName: Full=Ribose phosphate pyrophosphokinase NadR; EC=2.7.6.1; chromosome CDS2084616 906 + 0.466887
SO2485 deoxyguanosinetriphosphate triphosphohydrolase, putativeRecName: Full=Deoxyguanosinetriphosphate triphosphohydrolase-like protein; chromosome CDS2606493 1326 + 0.484163
SO2666 hypothetical proteinSubName: Full=Mu phage uncharacterized protein; chromosome CDS2796231 567 + 0.382716
SO2723 HIT family proteinSubName: Full=Purine nucleoside phosphoramidase HinT; chromosome CDS2839869 357 - 0.501401
SO3140 thymidine kinaseRecName: Full=Thymidine kinase; EC=2.7.1.21; chromosome CDS3273023 579 - 0.419689
SO3291 cytidine/deoxycytidylate deaminase family protein chromosome CDS3434995 585 - 0.494017
SO3317 5'-nucleotidase, putativeSubName: Full=5-nucleotidase; EC=3.1.3.5; chromosome CDS3469345 1752 + 0.496575
SO3358 HAM1 proteinRecName: Full=Non-canonical purine NTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase; chromosome CDS3500355 618 + 0.491909
SO3705 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase, putativeSubName: Full=5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase; EC=3.2.2.16; EC=3.2.2.9; chromosome CDS3854420 786 + 0.494911
SO3706 NupC family proteinSubName: Full=Nucleoside:proton symporter NupX; chromosome CDS3855323 1269 + 0.494878
SO3778 adenylate cyclase CyaB, putativeSubName: Full=Cytoplasmic adenylate cyclase CyaB; EC=4.6.1.1; chromosome CDS3928713 585 - 0.476923
SO3994 hypothetical protein chromosome CDS4132274 1020 - 0.319608
SO4066 phosphoribosylaminoimidazole-succinocarboxamide synthase, putativeRecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; chromosome CDS4219693 1104 + 0.493659
SO4296 NupC family proteinSubName: Full=Na-dependent nicotinamide ribose transporter NupC; chromosome CDS4474439 1206 + 0.494196
SO4297 uridine phosphorylase, putativeSubName: Full=N-ribosylnicotinamide phosphorylase NadP; EC=2.4.2.1; chromosome CDS4475715 726 + 0.53719
SO4312 adenylate cyclase CyaA, putativeSubName: Full=Adenylate cyclase CyaA; EC=4.6.1.1; chromosome CDS4488008 2415 - 0.457971
SOA0158 hypothetical protein megaplasmid CDS146804 321 - 0.470405
add adenosine deaminaseRecName: Full=Adenosine deaminase; EC=3.5.4.4; AltName: Full=Adenosine aminohydrolase; chromosome CDS4935576 996 - 0.486948
adk adenylate kinaseRecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; chromosome CDS2117461 645 + 0.494574
apt adenine phosphoribosyltransferase chromosome CDS2109294 546 + 0.446886
carA carbamoyl-phosphate synthase, small subunitRecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; chromosome CDS1181758 1161 + 0.478898
carB carbamoyl-phosphate synthase, large subunitRecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; chromosome CDS1182946 3225 + 0.502326
cdd cytidine deaminaseRecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA; chromosome CDS2913784 891 + 0.488215
cmk cytidylate kinaseRecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; chromosome CDS2506860 693 - 0.479076
cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesteraseSubName: Full=Bifunctional 2,3-cyclic-nucleotide 2-phosphodiesterase/3`-nucleotidase CpdB; EC=3.1.3.6; EC=3.1.4.16; chromosome CDS3727570 2058 + 0.438776
dcd deoxycytidine triphosphate deaminaseRecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; chromosome CDS2752176 582 - 0.510309
deoA thymidine phosphorylaseRecName: Full=Thymidine phosphorylase; EC=2.4.2.4; AltName: Full=TdRPase; chromosome CDS1264751 1332 + 0.487237
deoC deoxyribose-phosphate aldolaseRecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; chromosome CDS1263796 771 + 0.476005
deoD-1 purine nucleoside phosphorylaseRecName: Full=Purine nucleoside phosphorylase DeoD-type 1; Short=PNP 1; EC=2.4.2.1; chromosome CDS100249 711 - 0.390999
deoD-2 purine nucleoside phosphorylaseRecName: Full=Purine nucleoside phosphorylase DeoD-type 2; Short=PNP 2; EC=2.4.2.1; chromosome CDS1267398 711 + 0.448664
deoD-3 purine nucleoside phosphorylaseRecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; chromosome CDS2837111 705 - 0.456738
dut deoxyuridine 5'-triphosphate nucleotidohydrolaseRecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; chromosome CDS4427303 459 + 0.511983
fhs formate--tetrahydrofolate ligaseRecName: Full=Formate--tetrahydrofolate ligase; EC=6.3.4.3; AltName: Full=Formyltetrahydrofolate synthetase; Short=FHS; Short=FTHFS; chromosome CDS580495 1713 + 0.493287
gmk guanylate kinaseRecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; chromosome CDS370741 624 - 0.496795
gppA guanosine-5'-triphosphate,3'-diphosphatepyrophos phataseSubName: Full=Guanosine pentaphosphate phosphatase GppA; EC=3.6.1.40; chromosome CDS425050 921 + 0.462541
guaA GMP synthaseRecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; chromosome CDS3435675 1578 - 0.491762
hpt-2 hypoxanthine phosphoribosyltransferaseSubName: Full=Hypoxanthine phosphoribosyltransferase HprT; EC=2.4.2.8; chromosome CDS3958012 531 - 0.440678
miaE tRNA-(MS[2]IO[6]A)-hydroxylaseSubName: Full=tRNA-(MS(2)IO(6)A)-hydroxylase MiaE; EC=1.-.-.-; chromosome CDS1875042 786 + 0.447837
ndk nucleoside diphosphate kinaseRecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; chromosome CDS2386976 432 + 0.462963
nrdA ribonucleoside-diphosphate reductase, alpha subunitRecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS2520877 2289 + 0.463521
nrdB ribonucleoside-diphosphate reductase, beta subunitSubName: Full=Aerobic ribonucleoside-diphosphate reductase beta subunit NrdB; EC=1.17.4.1; chromosome CDS2523226 1131 + 0.461538
nrdD anaerobic ribonucleoside-triphosphate reductaseSubName: Full=Anaerobic ribonucleoside-triphosphate reductase NrdD; EC=1.17.4.2; chromosome CDS2950929 2118 - 0.478281
pfs 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidaseRecName: Full=5-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Short=MTA/SAH nucleosidase; Short=MTAN; EC=3.2.2.9; AltName: Full=5-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase; chromosome CDS1375956 711 - 0.489451
ppx exopolyphosphataseSubName: Full=Exopolyphosphatase Ppx; EC=3.6.1.11; chromosome CDS2294916 1557 - 0.470777
prsA ribose-phosphate pyrophosphokinaseRecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; Short=P-Rib-PP synthase; Short=PRPP synthase; chromosome CDS3986624 948 + 0.489451
purA adenylosuccinate synthetaseRecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; chromosome CDS4082753 1296 - 0.482253
purB adenylosuccinate lyaseSubName: Full=Adenylosuccinate lyase PurB; EC=4.3.2.2; chromosome CDS2770486 1371 + 0.474106
purD phosphoribosylamine--glycine ligaseRecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; chromosome CDS468430 1299 - 0.525789
purE phosphoribosylaminoimidazole carboxylase, catalytic subunitRecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; chromosome CDS3712440 492 + 0.497967
purF amidophosphoribosyltransferaseRecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; chromosome CDS3180212 1515 - 0.478548
purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolaseRecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; chromosome CDS469791 1632 - 0.505515
purK phosphoribosylaminoimidazole carboxylase, ATPase subunitSubName: Full=Phosphoribosylaminoimidazole carboxylase ATPase subunit PurK; EC=4.1.1.21; chromosome CDS3712931 1098 + 0.486339
purL phosphoribosylformylglycinamidine synthaseRecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; chromosome CDS3428937 3882 - 0.503606
purM phosphoribosylformylglycinamidine cyclo-ligase chromosome CDS2882759 1059 + 0.474976
purN phosphoribosylglycinamide formyltransferaseSubName: Full=Phosphoribosylglycinamide formyltransferase PurN; EC=2.1.2.2; chromosome CDS2883817 645 + 0.491473
purT phosphoribosylglycinamide formyltransferase 2 chromosome CDS3774248 1137 + 0.51803
purU formyltetrahydrofolate deformylase chromosome CDS1705770 816 + 0.444853
pyrB aspartate carbamoyltransferaseSubName: Full=Aspartate carbamoyltransferase PyrB; EC=2.1.3.2; chromosome CDS1353321 1020 - 0.466667
pyrC dihydroorotase, homodimeric typeRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS3846010 1032 + 0.50969
pyrD dihydroorotate dehydrogenaseRecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; chromosome CDS2719790 1020 - 0.401961
pyrE orotate phosphoribosyltransferaseRecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; chromosome CDS4431516 648 - 0.492284
pyrF orotidine 5`-phosphate decarboxylaseRecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; chromosome CDS2502432 696 - 0.474138
pyrG CTP synthaseRecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; chromosome CDS3584994 1641 - 0.46496
pyrH uridylate kinaseRecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; chromosome CDS1713184 729 + 0.474623
thyA thymidylate synthaseRecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; chromosome CDS1393066 795 + 0.466667
tmk thymidylate kinaseRecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; chromosome CDS2749728 630 - 0.498413
udk uridine kinaseRecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; chromosome CDS2752787 639 - 0.450704
udp uridine phosphorylaseRecName: Full=Uridine phosphorylase; EC=2.4.2.3; chromosome CDS4289808 759 - 0.500659
upp uracil phosphoribosyltransferaseRecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; chromosome CDS2881826 627 - 0.460925
uraA uracil permeaseSubName: Full=N-acetylglucosamine/uracil transporter UraA; chromosome CDS2999541 1239 + 0.474576
ushA 5'-nucleotidaseSubName: Full=Bifunctional UDP-sugar hydrolase/5-nucleotidase UshA; EC=3.1.3.5; EC=3.6.1.45; chromosome CDS2099989 1710 + 0.444444