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2024-05-18 23:34:30

Gene list

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COG category: Nucleotide transport and metabolism
Organism: Shigella boydii Sb227, Sb227

Number of genes found: 75

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Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SBO_2118 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2097956 261 + 0.505747
NA SBO_3111 conserved hypothetical proteinRecName: Full=D-phenylhydantoinase; EC=3.5.2.-; AltName: Full=Hydantoin-utilizing enzyme HyuA; chromosome CDS3112720 1398 - 0.528612
NA SBO_4353 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4405394 225 + 0.542222
add SBO_1511 adenosine deaminaseRecName: Full=Adenosine deaminase; EC=3.5.4.4; AltName: Full=Adenosine aminohydrolase; chromosome CDS1487550 1002 - 0.535928
adk SBO_0374 adenylate kinase activityRecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; chromosome CDS390425 645 + 0.517829
apt SBO_0369 adenine phosphoribosyltransferaseRecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; chromosome CDS384722 552 + 0.541667
carA SBO_0031 carbamoyl-phosphate synthetase, glutamine (small) subunitRecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; chromosome CDS29686 1149 + 0.532637
carB SBO_0032 carbamoyl-phosphate synthase large subunitRecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; chromosome CDS30852 3222 + 0.562384
cdd SBO_0998 cytidine/deoxycytidine deaminaseRecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA; chromosome CDS1017953 885 - 0.546893
cmk SBO_2198 cytidylate kinaseRecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; chromosome CDS2177149 684 + 0.530702
cpdB SBO_4230 2':3'-cyclic-nucleotide 2'-phosphodiesteraseSubName: Full=2:3-cyclic-nucleotide 2-phosphodiesterase; chromosome CDS4286614 1944 + 0.493313
cyaA SBO_3817 adenylate cyclaseRecName: Full=Adenylate cyclase; EC=4.6.1.1; chromosome CDS3839112 2547 + 0.52022
dcd SBO_0892 2'-deoxycytidine 5'-triphosphate deaminaseRecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; chromosome CDS912510 582 - 0.599656
deoA SBO_4444 thymidine phosphorylaseRecName: Full=Thymidine phosphorylase; EC=2.4.2.4; AltName: Full=TdRPase; chromosome CDS4496698 1323 + 0.5548
deoC SBO_4443 2-deoxyribose-5-phosphate aldolaseRecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; chromosome CDS4495792 780 + 0.544872
deoD SBO_4446 purine-nucleoside phosphorylaseRecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; chromosome CDS4499375 720 + 0.527778
dgt SBO_0149 deoxyguanosine triphosphate triphosphohydrolaseRecName: Full=Deoxyguanosinetriphosphate triphosphohydrolase; Short=dGTP triphosphohydrolase; Short=dGTPase; EC=3.1.5.1; chromosome CDS165266 1518 + 0.478261
dut SBO_3642 deoxyuridinetriphosphataseRecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; chromosome CDS3659530 456 + 0.550439
gmk SBO_3729 guanylate kinaseRecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; chromosome CDS3746261 624 - 0.488782
gppA SBO_3789 guanosine pentaphosphataseRecName: Full=Guanosine-5-triphosphate,3-diphosphate pyrophosphatase; EC=3.6.1.40; AltName: Full=Guanosine pentaphosphate phosphohydrolase; AltName: Full=pppGpp-5-phosphohydrolase; chromosome CDS3812233 1485 - 0.538047
gpt SBO_0244 guanine-hypoxanthine phosphoribosyltransferaseRecName: Full=Xanthine phosphoribosyltransferase; EC=2.4.2.22; AltName: Full=Xanthine-guanine phosphoribosyltransferase; Short=XGPRT; chromosome CDS260218 459 + 0.511983
guaA SBO_2531 GMP synthetaseRecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; chromosome CDS2526681 1578 - 0.543093
guaC SBO_0092 GMP reductaseRecName: Full=GMP reductase; EC=1.7.1.7; AltName: Full=Guanosine 5-monophosphate oxidoreductase; Short=Guanosine monophosphate reductase; chromosome CDS101338 1044 + 0.511494
hpt SBO_0114 hypoxanthine phosphoribosyltransferaseSubName: Full=Hypoxanthine phosphoribosyltransferase; chromosome CDS129618 549 + 0.502732
ndk SBO_2542 nucleoside diphosphate kinaseRecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; chromosome CDS2540155 432 - 0.525463
nrdA SBO_2060 ribonucleoside diphosphate reductase 1, alpha subunit, B1RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS2032386 2286 - 0.537183
nrdB SBO_2059 ribonucleoside-diphosphate reductase 1, beta subunit, B2SubName: Full=Ribonucleoside-diphosphate reductase 1, beta subunit, B2; chromosome CDS2031109 1131 - 0.504863
nrdD SBO_4208 anaerobic ribonucleoside-triphosphate reductaseSubName: Full=Anaerobic ribonucleoside-triphosphate reductase; chromosome CDS4259739 2139 + 0.537167
nrdE SBO_2842 ribonucleoside-diphosphate reductase 2, alpha subunitRecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS2850039 2145 - 0.523543
nrdF SBO_2841 ribonucleoside-diphosphate reductase 2, beta chain, fragRecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; chromosome CDS2849115 915 - 0.479781
nrdI SBO_2843 conserved hypothetical proteinRecName: Full=Protein NrdI; chromosome CDS2852156 411 - 0.557178
nupC SBO_2418 permease of transport system for 3 nucleosidesSubName: Full=Permease of transport system for 3 nucleosides; chromosome CDS2414972 1203 + 0.497091
pfs SBO_0148 conserved hypothetical proteinRecName: Full=5-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Short=MTA/SAH nucleosidase; Short=MTAN; EC=3.2.2.9; AltName: Full=5-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase; chromosome CDS164484 699 - 0.525036
ppx SBO_2523 exopolyphosphataseSubName: Full=Exopolyphosphatase; chromosome CDS2518767 1542 + 0.514267
prsA SBO_1860 phosphoribosylpyrophosphate synthetaseRecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; chromosome CDS1840784 948 + 0.526371
purA SBO_4279 adenylosuccinate synthetaseRecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; chromosome CDS4328294 1299 - 0.539646
purB SBO_1908 adenylosuccinate lyaseSubName: Full=Adenylosuccinate lyase; chromosome CDS1887674 1371 + 0.528082
purC SBO_2493 phosphoribosylaminoimidazole-succinocarboxamidesynthetaseRecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; chromosome CDS2486949 714 - 0.52381
purD SBO_4026 phosphoribosylglycinamide synthetaseRecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; chromosome CDS4063044 1290 - 0.582171
purE SBO_0420 phosphoribosylaminoimidazole carboxylaseRecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; chromosome CDS435414 510 + 0.590196
purF SBO_2349 amidophosphoribosyltransferaseRecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; chromosome CDS2337616 1518 - 0.528986
purH SBO_4027 phosphoribosylaminoimidazolecarboxamideformyltransferaseRecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; chromosome CDS4064345 1590 - 0.561006
purK SBO_0421 phosphoribosylaminoimidazole carboxylaseSubName: Full=Phosphoribosylaminoimidazole carboxylase; chromosome CDS435920 1068 + 0.565543
purL SBO_2585 phosphoribosylformyl-glycineamide synthetaseRecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; chromosome CDS2588733 3888 - 0.566101
purM SBO_2520 phosphoribosylaminoimidazole synthetaseRecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; chromosome CDS2514849 1038 + 0.530829
purN SBO_2521 phosphoribosylglycinamide formyltransferase 1SubName: Full=Phosphoribosylglycinamide formyltransferase 1; chromosome CDS2515886 639 + 0.533646
purT SBO_1157 phosphoribosylglycinamide formyltransferase 2RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; chromosome CDS1155972 1179 + 0.536896
purU SBO_1837 formyltetrahydrofolate deformylaseSubName: Full=Formyltetrahydrofolate deformylase; chromosome CDS1815219 843 + 0.47331
pyrB SBO_4201 aspartate carbamoyltransferase catalytic subunitRecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; chromosome CDS4250004 936 + 0.532051
pyrC SBO_2002 dihydro-orotaseRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS1974079 1047 + 0.527221
pyrD SBO_2286 dihydro-orotate dehydrogenaseRecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; chromosome CDS2274543 1011 - 0.469832
pyrE SBO_3644 orotate phosphoribosyltransferaseRecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; chromosome CDS3660725 642 - 0.531153
pyrF SBO_1783 orotidine-5'-phosphate decarboxylaseRecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; chromosome CDS1760423 738 - 0.52439
pyrG SBO_2661 CTP synthetaseRecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; chromosome CDS2664742 1638 - 0.518926
pyrH SBO_0159 uridylate kinaseRecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; chromosome CDS177873 726 + 0.526171
pyrI SBO_4202 aspartate carbamoyltransferase regulatory subunitRecName: Full=Aspartate carbamoyltransferase regulatory chain; chromosome CDS4250952 462 + 0.487013
tdk SBO_1831 thymidine kinaseRecName: Full=Thymidine kinase; EC=2.7.1.21; chromosome CDS1809699 618 - 0.42233
thyA SBO_2719 thymidylate synthetaseRecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; chromosome CDS2729610 795 - 0.514465
tmk SBO_1965 thymidylate kinaseRecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; chromosome CDS1939568 642 - 0.534268
udk SBO_0893 uridine/cytidine kinaseRecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; chromosome CDS913183 696 - 0.488506
udp SBO_3845 uridine phosphorylaseRecName: Full=Uridine phosphorylase; EC=2.4.2.3; chromosome CDS3869867 762 + 0.541995
upp SBO_2519 uracil phosphoribosyltransferaseRecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; chromosome CDS2513899 654 - 0.530581
uraA SBO_2518 uracil transportSubName: Full=Uracil transport; chromosome CDS2512524 1290 - 0.522481
ushA SBO_0382 UDP-sugar hydrolaseSubName: Full=UDP-sugar hydrolase; chromosome CDS398837 1653 + 0.508167
yaaF SBO_0029 conserved hypothetical proteinRecName: Full=Non-specific ribonucleoside hydrolase RihC; EC=3.2.-.-; AltName: Full=Purine/pyrimidine ribonucleoside hydrolase; chromosome CDS27329 915 + 0.560656
ybbT SBO_0409 conserved hypothetical proteinRecName: Full=Ureidoglycolate lyase; EC=4.3.2.3; AltName: Full=Ureidoglycolatase; chromosome CDS426517 483 + 0.511387
ybeK SBO_0514 putative tRNA synthetaseRecName: Full=Pyrimidine-specific ribonucleoside hydrolase RihA; EC=3.2.-.-; AltName: Full=Cytidine/uridine-specific hydrolase; chromosome CDS532768 936 - 0.508547
ycfF SBO_1958 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1932312 360 - 0.502778
yeiJ SBO_2166 putative transport system permease proteinSubName: Full=Putative transport system permease protein; chromosome CDS2141364 1251 + 0.504396
yeiK SBO_2165 conserved hypothetical proteinRecName: Full=Putative pyrimidine-specific ribonucleoside hydrolase RihB; EC=3.2.2.8; AltName: Full=Cytidine/uridine-specific hydrolase; chromosome CDS2140536 729 + 0.547325
yfhC SBO_2587 putative deaminaseRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS2594433 537 - 0.540037
ygfU SBO_3104 putative permeaseSubName: Full=Putative permease; chromosome CDS3105657 1518 - 0.487484
yggV SBO_3036 putative ribosomal proteinRecName: Full=dITP/XTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-canonical purine NTP pyrophosphatase; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; chromosome CDS3036267 594 - 0.553872
yicE SBO_3723 putative transport proteinSubName: Full=Putative transport protein; chromosome CDS3738111 1392 - 0.548851
yicP SBO_3704 probable adenine deaminaseRecName: Full=Adenine deaminase; Short=Adenase; Short=Adenine aminase; EC=3.5.4.2; chromosome CDS3720328 1767 - 0.547821