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2024-05-10 14:32:43

Gene list

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COG category: Nucleotide transport and metabolism
Organism: Escherichia coli W3110, K-12

Number of genes found: 92

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Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
add adenosine deaminaseRecName: Full=Adenosine deaminase; EC=3.5.4.4; AltName: Full=Adenosine aminohydrolase; chromosome CDS1703947 1002 + 0.538922
ade cryptic adenine deaminaseRecName: Full=Adenine deaminase; Short=Adenase; Short=Adenine aminase; EC=3.5.4.2; chromosome CDS3794685 1767 - 0.546123
adk adenylate kinaseRecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; chromosome CDS496399 645 + 0.517829
allA ureidoglycolate hydrolaseRecName: Full=Ureidoglycolate lyase; EC=4.3.2.3; AltName: Full=Ureidoglycolatase; AltName: Full=Ureidoglycolate hydrolase; chromosome CDS531675 483 + 0.511387
allB allantoinaseRecName: Full=Allantoinase; EC=3.5.2.5; AltName: Full=Allantoin-utilizing enzyme; chromosome CDS538371 1362 + 0.516153
amn AMP nucleosidaseRecName: Full=AMP nucleosidase; EC=3.2.2.4; chromosome CDS2057198 1455 + 0.502406
apt adenine phosphoribosyltransferaseRecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; chromosome CDS490636 552 + 0.543478
carA carbamoyl phosphate synthetase small subunit, glutamine amidotransferaseRecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; chromosome CDS29651 1149 + 0.533507
carB carbamoyl-phosphate synthase large subunitRecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; chromosome CDS30817 3222 + 0.562694
cdd cytidine/deoxycytidine deaminaseRecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA; chromosome CDS2235178 885 + 0.546893
cmk cytidylate kinaseRecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; AltName: Full=Protein MssA; AltName: Full=p25; chromosome CDS961623 684 + 0.53655
codA cytosine deaminaseRecName: Full=Cytosine deaminase; EC=3.5.4.1; AltName: Full=Cytosine aminohydrolase; chromosome CDS355395 1284 + 0.534268
codB cytosine transporterRecName: Full=Cytosine permease; chromosome CDS354146 1260 + 0.538889
cpdB 2':3'-cyclic-nucleotide 2'-phosphodiesteraseRecName: Full=2,3-cyclic-nucleotide 2-phosphodiesterase/3-nucleotidase; EC=3.1.3.6; EC=3.1.4.16; Flags: Precursor; chromosome CDS4439302 1944 - 0.494856
cyaA adenylate cyclaseRecName: Full=Adenylate cyclase; EC=4.6.1.1; AltName: Full=ATP pyrophosphate-lyase; AltName: Full=Adenylyl cyclase; chromosome CDS3642982 2547 - 0.519435
dcd 2'-deoxycytidine 5'-triphosphate deaminaseRecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; chromosome CDS2143771 582 - 0.603093
deoA thymidine phosphorylaseRecName: Full=Thymidine phosphorylase; EC=2.4.2.4; AltName: Full=TdRPase; chromosome CDS4622909 1323 + 0.551776
deoC 2-deoxyribose-5-phosphate aldolase, NAD(P)-linkedRecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; chromosome CDS4622003 780 + 0.553846
deoD purine-nucleoside phosphorylaseRecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; AltName: Full=Inosine phosphorylase; chromosome CDS4625563 720 + 0.523611
dgt deoxyguanosine triphosphate triphosphohydrolaseRecName: Full=Deoxyguanosinetriphosphate triphosphohydrolase; Short=dGTP triphosphohydrolase; Short=dGTPase; EC=3.1.5.1; chromosome CDS179237 1518 + 0.479578
dut deoxyuridinetriphosphataseRecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; chromosome CDS3826028 456 - 0.546053
gmk guanylate kinaseRecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; chromosome CDS3818364 624 - 0.490385
gpp guanosine pentaphosphatase/exopolyphosphataseRecName: Full=Guanosine-5-triphosphate,3-diphosphate pyrophosphatase; EC=3.6.1.40; AltName: Full=Guanosine pentaphosphate phosphohydrolase; AltName: Full=pppGpp-5-phosphohydrolase; chromosome CDS3672452 1485 + 0.5367
gpt guanine-hypoxanthine phosphoribosyltransferaseRecName: Full=Xanthine phosphoribosyltransferase; EC=2.4.2.22; AltName: Full=Xanthine-guanine phosphoribosyltransferase; Short=XGPRT; chromosome CDS255977 459 + 0.518519
guaA GMP synthetaseRecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; Short=GMPS; AltName: Full=Glutamine amidotransferase; chromosome CDS2629614 1578 - 0.541191
guaC GMP reductaseRecName: Full=GMP reductase; EC=1.7.1.7; AltName: Full=Guanosine 5-monophosphate oxidoreductase; Short=Guanosine monophosphate reductase; chromosome CDS113444 1044 + 0.51341
guaD guanine deaminaseRecName: Full=Guanine deaminase; Short=Guanase; Short=Guanine aminase; EC=3.5.4.3; AltName: Full=Guanine aminohydrolase; Short=GAH; chromosome CDS3024422 1320 + 0.489394
hinT purine nucleoside phosphoramidaseRecName: Full=HIT-like protein HinT; EC=3.-.-.-; AltName: Full=Purine nucleoside phosphoramidase; chromosome CDS1163462 360 + 0.505556
hpt hypoxanthine phosphoribosyltransferaseRecName: Full=Hypoxanthine phosphoribosyltransferase; Short=HPRT; EC=2.4.2.8; chromosome CDS141431 537 + 0.506518
hyuA D-stereospecific phenylhydantoinaseRecName: Full=D-phenylhydantoinase; EC=3.5.2.-; AltName: Full=Hydantoin-utilizing enzyme HyuA; chromosome CDS3008684 1386 + 0.528139
iadA isoaspartyl dipeptidaseRecName: Full=Isoaspartyl dipeptidase; EC=3.4.19.-; chromosome CDS4563034 1173 - 0.56607
ndk multifunctional nucleoside diphosphate kinase, apyrimidinic endonuclease, and 3'-phosphodiesteraseRecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; chromosome CDS2643089 432 - 0.523148
nrdA ribonucleoside diphosphate reductase 1, alpha subunitRecName: Full=Ribonucleoside-diphosphate reductase 1 subunit alpha; EC=1.17.4.1; AltName: Full=Protein B1; AltName: Full=Ribonucleoside-diphosphate reductase 1 R1 subunit; AltName: Full=Ribonucleotide reductase 1; chromosome CDS2349535 2286 + 0.536745
nrdB ribonucleoside diphosphate reductase 1, beta subunit, ferritin-likeRecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta; EC=1.17.4.1; AltName: Full=Protein B2; AltName: Full=Protein R2; AltName: Full=Ribonucleotide reductase 1; chromosome CDS2352054 1131 + 0.505747
nrdD anaerobic ribonucleoside-triphosphate reductaseRecName: Full=Anaerobic ribonucleoside-triphosphate reductase; EC=1.17.4.2; chromosome CDS4465202 2139 - 0.535297
nrdE ribonucleoside-diphosphate reductase 2, alpha subunitRecName: Full=Ribonucleoside-diphosphate reductase 2 subunit alpha; EC=1.17.4.1; AltName: Full=R1E protein; AltName: Full=Ribonucleotide reductase 2; chromosome CDS2800004 2145 + 0.518415
nrdF ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-likeRecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta; EC=1.17.4.1; AltName: Full=R2F protein; AltName: Full=Ribonucleotide reductase 2; chromosome CDS2802158 960 + 0.482292
nrdI protein that stimulates ribonucleotide reductionRecName: Full=Protein NrdI; chromosome CDS2799621 411 + 0.559611
nupC nucleoside (except guanosine) transporterRecName: Full=Nucleoside permease NupC; AltName: Full=Nucleoside-transport system protein NupC; chromosome CDS2518488 1203 + 0.498753
orn oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4396284 546 + 0.540293
pfs 5'-methylthioadenosine/S-adenosylhomocysteinenuc leosidaseRecName: Full=5-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Short=MTA/SAH nucleosidase; Short=MTAN; EC=3.2.2.9; AltName: Full=5-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=P46; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase; chromosome CDS178455 699 - 0.523605
ppx exopolyphosphataseRecName: Full=Exopolyphosphatase; Short=ExopolyPase; EC=3.6.1.11; AltName: Full=Metaphosphatase; chromosome CDS2623771 1542 + 0.511673
prsA phosphoribosylpyrophosphate synthaseRecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; Short=P-Rib-PP synthase; Short=PRPP synthase; chromosome CDS1262505 948 - 0.525316
purA adenylosuccinate synthetaseRecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; chromosome CDS4409367 1299 + 0.538876
purB adenylosuccinate lyaseRecName: Full=Adenylosuccinate lyase; Short=ASL; EC=4.3.2.2; AltName: Full=Adenylosuccinase; Short=ASase; chromosome CDS1192193 1371 - 0.522976
purC phosphoribosylaminoimidazole-succinocarboxamidesynthetaseRecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; chromosome CDS2595561 714 - 0.522409
purD phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligaseRecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; chromosome CDS3430750 1290 + 0.582171
purE N5-carboxyaminoimidazole ribonucleotide mutaseRecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; AltName: Full=5-(carboxyamino)imidazole ribonucleotide mutase; chromosome CDS551814 510 - 0.590196
purF amidophosphoribosyltransferase chromosome CDS2434167 1518 - 0.528986
purH fused IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferaseRecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; chromosome CDS3429149 1590 + 0.562893
purK N5-carboxyaminoimidazole ribonucleotide synthaseRecName: Full=N5-carboxyaminoimidazole ribonucleotide synthase; Short=N5-CAIR synthase; EC=6.3.4.18; AltName: Full=5-(carboxyamino)imidazole ribonucleotide synthetase; chromosome CDS550750 1068 - 0.564607
purL phosphoribosylformyl-glycineamide synthetaseRecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; chromosome CDS2690312 3888 - 0.56893
purM phosphoribosylaminoimidazole synthetaseRecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; chromosome CDS2619853 1038 + 0.528902
purN phosphoribosylglycinamide formyltransferase 1RecName: Full=Phosphoribosylglycinamide formyltransferase; EC=2.1.2.2; AltName: Full=5-phosphoribosylglycinamide transformylase; AltName: Full=GAR transformylase; Short=GART; chromosome CDS2620890 639 + 0.536776
purT phosphoribosylglycinamide formyltransferase 2 chromosome CDS1932595 1179 + 0.537744
purU formyltetrahydrofolate hydrolaseRecName: Full=Formyltetrahydrofolate deformylase; EC=3.5.1.10; AltName: Full=Formyl-FH(4) hydrolase; chromosome CDS1289359 843 - 0.472123
pyrB aspartate carbamoyltransferase, catalytic subunitRecName: Full=Aspartate carbamoyltransferase catalytic chain; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; chromosome CDS4476140 936 - 0.537393
pyrC dihydro-orotaseRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS1123138 1047 - 0.531041
pyrD dihydro-orotate oxidase, FMN-linkedRecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; chromosome CDS1005190 1011 + 0.469832
pyrE orotate phosphoribosyltransferaseRecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; chromosome CDS3824647 642 + 0.531153
pyrF orotidine-5'-phosphate decarboxylaseRecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; chromosome CDS1343635 738 + 0.52981
pyrG CTP synthetaseRecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; chromosome CDS2906685 1638 - 0.518926
pyrH uridylate kinaseRecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; chromosome CDS191855 726 + 0.527548
pyrI aspartate carbamoyltransferase, regulatory subunitRecName: Full=Aspartate carbamoyltransferase regulatory chain; chromosome CDS4475666 462 - 0.484848
rihA ribonucleoside hydrolase 1RecName: Full=Pyrimidine-specific ribonucleoside hydrolase RihA; EC=3.2.-.-; AltName: Full=Cytidine/uridine-specific hydrolase; chromosome CDS683899 936 - 0.508547
rihB ribonucleoside hydrolase 2RecName: Full=Pyrimidine-specific ribonucleoside hydrolase RihB; EC=3.2.2.8; AltName: Full=Cytidine/uridine-specific hydrolase; chromosome CDS2257579 942 - 0.52017
rihC ribonucleoside hydrolase 3RecName: Full=Non-specific ribonucleoside hydrolase RihC; EC=3.2.-.-; AltName: Full=Purine/pyrimidine ribonucleoside hydrolase; chromosome CDS27293 915 + 0.562842
ssnA predicted chlorohydrolase/aminohydrolaseRecName: Full=Protein SsnA; chromosome CDS3017817 1329 + 0.526712
tadA tRNA-specific adenosine deaminaseRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS2696010 537 - 0.541899
tdk thymidine kinase/deoxyuridine kinaseRecName: Full=Thymidine kinase; EC=2.7.1.21; chromosome CDS1295104 618 + 0.42233
thyA thymidylate synthetaseRecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; chromosome CDS2963017 795 - 0.510692
tmk thymidylate kinaseRecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=Thymidine monophosphate kinase; AltName: Full=dTMP kinase; Short=TMPK; chromosome CDS1156701 642 + 0.540498
udk uridine/cytidine kinaseRecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; chromosome CDS2144444 642 - 0.487539
udp uridine phosphorylaseRecName: Full=Uridine phosphorylase; Short=UPase; Short=UrdPase; EC=2.4.2.3; chromosome CDS3619489 762 - 0.540682
upp uracil phosphoribosyltransferaseRecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; chromosome CDS2618902 627 - 0.529506
uraA uracil transporterRecName: Full=Uracil permease; AltName: Full=Uracil transporter; chromosome CDS2617527 1290 - 0.51938
ushA bifunctional UDP-sugar hydrolase and 5'-nucleotidaseRecName: Full=Protein UshA; Includes: RecName: Full=UDP-sugar hydrolase; EC=3.6.1.45; AltName: Full=UDP-sugar diphosphatase; AltName: Full=UDP-sugar pyrophosphatase; Includes: RecName: Full=5-nucleotidase; Short=5-NT; EC=3.1.3.5; Flags: Precursor; chromosome CDS504138 1653 + 0.508772
xapA purine nucleoside phosphorylase IIRecName: Full=Purine nucleoside phosphorylase 2; EC=2.4.2.1; AltName: Full=Inosine-guanosine phosphorylase; AltName: Full=Purine nucleoside phosphorylase II; Short=PNP II; AltName: Full=Xanthosine phosphorylase; chromosome CDS2529491 834 - 0.516787
yahJ predicted deaminase with metallo-dependent hydrolase domainRecName: Full=Uncharacterized protein YahJ; Flags: Precursor; chromosome CDS340349 1383 + 0.562545
ybbW predicted allantoin transporterRecName: Full=Putative allantoin permease; AltName: Full=Allantoin transport protein; chromosome CDS536857 1455 + 0.470103
ybbY predicted uracil/xanthine transporterRecName: Full=Putative purine permease YbbY; chromosome CDS539789 1302 + 0.512289
ycdG predicted transporterRecName: Full=Putative pyrimidine permease RutG; chromosome CDS1068933 1329 - 0.540256
yeiA predicted oxidoreductaseRecName: Full=NAD-dependent dihydropyrimidine dehydrogenase subunit PreA; Short=DPD; EC=1.3.1.1; AltName: Full=Dihydrothymine dehydrogenase; AltName: Full=Dihydrouracil dehydrogenase; chromosome CDS2238599 1236 + 0.510518
yeiJ predicted nucleoside transporterRecName: Full=Nucleoside permease NupX; chromosome CDS2256229 1251 - 0.504396
yeiM predicted nucleoside transporterRecName: Full=Putative pseudouridine transporter; chromosome CDS2259419 1251 - 0.510791
ygfO predicted transporterRecName: Full=Xanthine permease XanQ; chromosome CDS3023007 1401 + 0.488936
ygfU predicted transporterRecName: Full=Uric acid transporter UacT; chromosome CDS3030023 1449 + 0.489993
yggV dITP/XTP pyrophosphataseRecName: Full=dITP/XTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-canonical purine NTP pyrophosphatase; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase; chromosome CDS3095337 594 + 0.555556
yghR hypothetical protein with nucleoside triphosphate hydrolase domainRecName: Full=Uncharacterized ATP-binding protein YghR; chromosome CDS3131110 759 - 0.534914
yghS hypothetical protein with nucleoside triphosphate hydrolase domainRecName: Full=Uncharacterized ATP-binding protein YghS; chromosome CDS3131900 714 - 0.502801
yghT hypothetical protein with nucleoside triphosphate hydrolase domainRecName: Full=Uncharacterized ATP-binding protein YghT; chromosome CDS3132787 693 + 0.474747
yicE predicted transporterRecName: Full=Xanthine permease XanP; chromosome CDS3810079 1392 - 0.548851