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2024-05-18 15:19:57

Gene list

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COG category: Nucleotide transport and metabolism
Organism: Pseudomonas fluorescens Pf-5, Pf-5

Number of genes found: 97

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Pseudomonas fluorescens Pf-5, Pf-5
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PFL_4928 cytidine/deoxycytidylate deaminase family proteinRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS5678227 489 - 0.672802
NA PFL_2107 inosine/uridine-preferring nucleoside hydrolase family proteinSubName: Full=Pyrimidine-specific ribonucleoside hydrolase RihA; EC=3.2.2.8; chromosome CDS2327429 1029 + 0.626822
NA PFL_4772 histidine triad family protein VC2075SubName: Full=Histidine triad domain protein; chromosome CDS5508104 426 - 0.577465
NA PFL_4524 ribonucleoside-diphosphate reductase, beta subunit, putativeRecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; chromosome CDS5237870 1248 + 0.598558
NA PFL_0402 cytosine/purine/uracil/thiamine/allantoin permease family proteinSubName: Full=Permease, cytosine/purine, uracil, thiamine, allantoin family; chromosome CDS462857 1470 + 0.62449
NA PFL_0222 guanine deaminase, putativeSubName: Full=Putative guanine deaminase; EC=3.5.4.3; chromosome CDS259823 462 - 0.670996
NA PFL_6183 dihydroorotase, putativeSubName: Full=Putative dihydroorotase; chromosome CDS7019061 1335 + 0.681648
NA PFL_4021 nucleoside 2-deoxyribosyltransferase family proteinSubName: Full=Nucleoside 2-deoxyribosyltransferase family protein; chromosome CDS4637925 507 + 0.676529
NA PFL_3462 cytosine/purine/uracil/thiamine/allantoin permease family proteinSubName: Full=Permease, cytosine/purine, uracil, thiamine, allantoin family; chromosome CDS3976485 1437 - 0.560195
NA PFL_2275 purine nucleoside permease, putativeSubName: Full=Purine nucleoside permease, NUP family; chromosome CDS2536097 1029 - 0.663751
NA PFL_5950 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS6763232 318 + 0.619497
NA PFL_5140 uracil permease PA4647SubName: Full=Uracil permease; chromosome CDS5901870 1275 + 0.646275
NA PFL_4371 xanthine/uracil permease family proteinSubName: Full=Xanthine/uracil permease family protein; chromosome CDS5076374 1359 + 0.643856
NA PFL_4032 cytosine transporter chromosome CDS4647150 1416 + 0.674435
NA PFL_2039 xanthine/uracil permease family protein chromosome CDS2265921 1896 + 0.617089
NA PFL_1853 transporter, NCS1 nucleoside transporter familySubName: Full=Permease, cytosine/purine, uracil, thiamine, allantoin family; chromosome CDS2056869 1542 - 0.641375
NA PFL_2549 transporter, NCS1 nucleoside transporter familySubName: Full=Permease, cytosine/purine, uracil, thiamine, allantoin family; chromosome CDS2821238 1488 + 0.647177
NA PFL_0731 xanthine/uracil permease family protein chromosome CDS847938 1440 - 0.654167
NA PFL_1084 hydrolase, NUDIX familySubName: Full=Hydrolase, NUDIX family; chromosome CDS1240277 552 - 0.628623
NA PFL_5138 hypoxanthine phosphoribosyltransferase, putativeSubName: Full=Putative hypoxanthine phosphoribosyltransferase; chromosome CDS5900507 558 - 0.612903
NA PFL_4090 conserved hypothetical protein chromosome CDS4719611 975 - 0.629744
NA PFL_0724 hydroxydechloroatrazine ethylaminohydrolase, putativeSubName: Full=Amidohydrolase family protein; chromosome CDS839480 1359 - 0.646063
NA PFL_5745 cytidine/deoxycytidylate deaminase family proteinSubName: Full=Cytidine/deoxycytidylate deaminase family protein; chromosome CDS6547242 510 - 0.682353
NA PFL_3023 hydrolase, NUDIX familySubName: Full=Hydrolase, NUDIX family; chromosome CDS3486392 417 + 0.688249
NA PFL_4476 ribonucleoside-diphosphate reductase, alpha chainRecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS5187180 2892 + 0.608575
NA PFL_4029 hydrolase, NUDIX familySubName: Full=Hydrolase, NUDIX family; chromosome CDS4645843 624 + 0.660256
NA PFL_4536 CTP synthase domain proteinSubName: Full=Uncharacterized protein; chromosome CDS5250306 720 + 0.663889
NA PFL_2782 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3086618 438 + 0.630137
NA PFL_2367 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2642081 483 - 0.602484
NA PFL_4235 deoxyguanosinetriphosphate triphosphohydrolase, putativeSubName: Full=Putative dGTPase; EC=3.1.5.1; chromosome CDS4923129 1332 + 0.656907
NA PFL_2239 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2501883 753 - 0.726428
NA PFL_1810 transporter, NCS1 nucleoside transporter family, putativeSubName: Full=Permease, cytosine/purine, uracil, thiamine, allantoin family; chromosome CDS2011562 1467 + 0.658487
NA PFL_5616 HIT family proteinSubName: Full=Histidine triad domain protein; chromosome CDS6397562 339 + 0.587021
NA PFL_2464 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2727484 708 - 0.669492
NA PFL_5680 glutamine amidotransferase, class ISubName: Full=Glutamine amidotransferase, class I; chromosome CDS6472957 726 - 0.644628
NA PFL_0994 Ser/Thr protein phosphatase/5'-nucleotidase domain proteinSubName: Full=Ser/Thr protein phosphatase/5-nucleotidase domain protein; chromosome CDS1135458 1704 + 0.677817
NA PFL_0006 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS7345 486 + 0.572016
NA PFL_1837 glutamine amidotransferase, class ISubName: Full=Glutamine amidotransferase, class I; chromosome CDS2038257 723 + 0.611342
NA PFL_5832 PyrR bifunctional protein, putativeRecName: Full=Bifunctional protein PyrR; Includes: RecName: Full=Pyrimidine operon regulatory protein; Includes: RecName: Full=Uracil phosphoribosyltransferase; Short=UPRTase; EC=2.4.2.9; chromosome CDS6641522 507 + 0.666667
NA PFL_5732 cytosine/purine/uracil/thiamine/allantoin permease family proteinSubName: Full=Permease, cytosine/purine, uracil, thiamine, allantoin family; chromosome CDS6531412 1446 + 0.647994
NA PFL_4368 allantoicaseRecName: Full=Probable allantoicase; EC=3.5.3.4; AltName: Full=Allantoate amidinohydrolase; chromosome CDS5073249 996 + 0.62249
add PFL_0719 adenosine deaminaseRecName: Full=Adenine deaminase; Short=ADE; EC=3.5.4.2; AltName: Full=Adenine aminohydrolase; Short=AAH; chromosome CDS833705 954 - 0.628931
adk PFL_1148 adenylate kinaseRecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; chromosome CDS1316181 648 + 0.614198
allA PFL_4369 ureidoglycolate hydrolaseRecName: Full=Ureidoglycolate lyase; EC=4.3.2.3; AltName: Full=Ureidoglycolatase; chromosome CDS5074328 504 + 0.581349
amn PFL_5424 AMP nucleosidaseSubName: Full=AMP nucleosidase; EC=3.2.2.4; chromosome CDS6191862 1464 - 0.629098
apt PFL_1909 adenine phosphoribosyltransferaseRecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; chromosome CDS2130261 549 - 0.621129
carA PFL_0830 carbamoyl-phosphate synthase, small subunitRecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; chromosome CDS958955 1137 + 0.612137
carB PFL_0831 carbamoyl-phosphate synthase, large subunitRecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; chromosome CDS960221 3222 + 0.605835
cmk PFL_4309 cytidylate kinaseRecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; chromosome CDS5008893 690 - 0.604348
codA PFL_4033 cytosine deaminaseSubName: Full=Cytosine deaminase; EC=3.5.4.1; chromosome CDS4648736 1257 + 0.661098
cyaA PFL_6008 adenylate cyclase, class ISubName: Full=Adenylate cyclase, class I; EC=4.6.1.1; chromosome CDS6827646 2847 + 0.632244
cytX PFL_0539 probable hydroxymethylpyrimidine transporter CytXSubName: Full=Putative hydroxymethylpyrimidine transporter CytX; chromosome CDS629928 1293 + 0.651199
dcd PFL_1261 deoxycytidine triphosphate deaminase chromosome CDS1432844 612 + 0.588235
dut PFL_6053 deoxyuridine 5'-triphosphate nucleotidohydrolaseRecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; chromosome CDS6875180 456 + 0.649123
gmk PFL_6061 guanylate kinaseRecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; chromosome CDS6882211 621 + 0.615137
guaA PFL_4939 GMP synthaseRecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; chromosome CDS5691444 1578 - 0.630545
guaD PFL_1886 guanine deaminaseSubName: Full=Guanine deaminase; EC=3.5.4.3; chromosome CDS2099695 1305 - 0.63908
hutF PFL_0398 formiminoglutamate deiminaseSubName: Full=Formimidoylglutamate deiminase; EC=3.5.3.13; chromosome CDS457850 1365 - 0.662271
hydA PFL_2548 dihydropyrimidinaseSubName: Full=Dihydropyrimidinase; EC=3.5.2.2; chromosome CDS2819177 1440 - 0.654167
miaE PFL_2636 tRNA-(ms[2]io[6]A)-hydroxylase chromosome CDS2916762 624 + 0.637821
ndk PFL_4958 nucleoside diphosphate kinaseRecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; chromosome CDS5713079 426 - 0.556338
pbuX PFL_3157 xanthine/uracil permease family proteinSubName: Full=High-affinity xanthine transporter, NCS2 family, YgfO; chromosome CDS3632553 1440 + 0.645833
pbuX PFL_5746 xanthine/uracil permease family proteinSubName: Full=Uracil/xanthine permease; chromosome CDS6547807 1338 - 0.653214
pcaB PFL_1323 3-carboxy-cis,cis-muconate cycloisomeraseSubName: Full=3-carboxy-cis,cis-muconate cycloisomerase; EC=5.5.1.2; chromosome CDS1497295 1365 + 0.685714
pkcI PFL_5017 HIT family proteinSubName: Full=Histidine triad domain protein; chromosome CDS5774838 477 - 0.637317
ppx PFL_5983 exopolyphosphatase chromosome CDS6801254 1542 + 0.636187
prs PFL_5165 ribose-phosphate pyrophosphokinaseRecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; chromosome CDS5924445 942 + 0.562633
purA PFL_0571 adenylosuccinate synthetaseRecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; chromosome CDS664578 1293 + 0.62181
purB PFL_3893 adenylosuccinate lyaseSubName: Full=Adenylosuccinate lyase; EC=4.3.2.2; chromosome CDS4492854 1371 + 0.627279
purC PFL_1460 phosphoribosylaminoimidazole-succinocarboxamidesynthaseRecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; chromosome CDS1639265 714 + 0.59944
purD PFL_0665 phosphoribosylamine--glycine ligaseRecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; chromosome CDS775135 1290 - 0.654264
purE PFL_6126 phosphoribosylaminoimidazole carboxylase, catalytic subunitRecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; chromosome CDS6956161 492 - 0.656504
purF PFL_2077 amidophosphoribosyltransferaseRecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; chromosome CDS2303911 1506 + 0.604914
purH PFL_0666 bifunctional purine biosynthesis protein PurHRecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; chromosome CDS776613 1608 - 0.638682
purK PFL_6125 phosphoribosylaminoimidazole carboxylase, ATPase subunitSubName: Full=Phosphoribosylaminoimidazole carboxylase, ATPase subunit; EC=4.1.1.21; chromosome CDS6955067 1083 - 0.660203
purL PFL_1076 phosphoribosylformylglycinamidine synthaseRecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; chromosome CDS1227969 3897 + 0.646651
purM PFL_4440 phosphoribosylformylglycinamidine cyclo-ligaseRecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; chromosome CDS5149260 1059 + 0.650614
purN PFL_4441 phosphoribosylglycinamide formyltransferaseSubName: Full=Phosphoribosylglycinamide formyltransferase; EC=2.1.2.2; chromosome CDS5150330 651 + 0.620584
purT PFL_1089 phosphoribosylglycinamide formyltransferase 2RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; chromosome CDS1243062 1182 + 0.650592
purU PFL_5724 formyltetrahydrofolate deformylaseSubName: Full=Formyltetrahydrofolate deformylase; EC=3.5.1.10; chromosome CDS6521281 858 - 0.648019
purU PFL_4786 formyltetrahydrofolate deformylase chromosome CDS5526156 885 - 0.60226
pyrB PFL_5833 aspartate carbamoyltransferaseRecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; chromosome CDS6642054 1005 + 0.657711
pyrC PFL_4855 dihydroorotase, homodimeric typeRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS5598859 1047 + 0.638013
pyrC PFL_5834 dihydroorotase, multifunctional complex typeRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS6643055 1272 + 0.702044
pyrD PFL_1877 dihydroorotate oxidaseRecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; chromosome CDS2086210 1020 + 0.639216
pyrE PFL_6056 orotate phosphoribosyltransferaseRecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; chromosome CDS6878376 645 - 0.635659
pyrF PFL_1754 orotidine 5'-phosphate decarboxylaseRecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; chromosome CDS1960674 702 + 0.665242
pyrG PFL_1194 CTP synthaseRecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; chromosome CDS1368960 1632 + 0.61152
pyrH PFL_1178 uridylate kinaseRecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; chromosome CDS1349921 744 + 0.594086
rdgB PFL_5845 non-canonical purine NTP pyrophosphatase RdgBRecName: Full=Non-canonical purine NTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; chromosome CDS6651903 594 + 0.6633
thyA PFL_5895 thymidylate synthaseRecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; chromosome CDS6705148 972 - 0.635802
tmk PFL_1801 thymidylate kinaseRecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; chromosome CDS2003313 633 + 0.680885
trzA-1 PFL_4316 hydrolase, Atz/Trz familyRecName: Full=5-methylthioadenosine/S-adenosylhomocysteine deaminase; Short=MTA/SAH deaminase; EC=3.5.4.28; EC=3.5.4.31; chromosome CDS5019392 1332 + 0.644895
upp PFL_5139 uracil phosphoribosyltransferaseRecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; chromosome CDS5901229 639 + 0.610329
xdhA PFL_1889 xanthine dehydrogenase, XdhA subunitSubName: Full=Xanthine dehydrogenase, small subunit; EC=1.17.1.4; chromosome CDS2104344 1455 - 0.652921
xdhB PFL_1888 xanthine dehydrogenase, XdhB subunitSubName: Full=Xanthine dehydrogenase, molybdopterin binding subunit; EC=1.17.1.4; chromosome CDS2101952 2400 - 0.644583
xpt PFL_6032 xanthine phosphoribosyltransferaseRecName: Full=Xanthine phosphoribosyltransferase; Short=XPRTase; EC=2.4.2.22; chromosome CDS6854409 573 + 0.609075