Gene list
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COG category: Nucleotide transport and metabolism
Organism: Pseudomonas syringae pv. syringae B728a, B728a
Number of genes found: 88
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| Pseudomonas syringae pv. syringae B728a, B728a | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Psyr_2788 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3372178 | 450 | - | 0.571111 |
| NA | Psyr_1668 | Amidophosphoribosyl transferase | RecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; | chromosome | CDS | 1872455 | 1509 | + | 0.595759 |
| NA | Psyr_1267 | Cytidine/deoxycytidylate deaminase, zinc-binding region | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome | CDS | 1431121 | 510 | + | 0.641176 |
| NA | Psyr_3280 | Methylthioadenosine phosphorylase | RecName: Full=Probable S-methyl-5-thioinosine phosphorylase; EC=2.4.2.44; AltName: Full=5-methylthioinosine phosphorylase; AltName: Full=Purine nucleoside phosphorylase; | chromosome | CDS | 3927626 | 741 | - | 0.608637 |
| NA | Psyr_4840 | Thymidylate synthase | RecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; | chromosome | CDS | 5745354 | 972 | - | 0.608025 |
| NA | Psyr_4735 | GTP-binding protein, HSR1-related | SubName: Full=GTP-binding protein, HSR1-related protein; | chromosome | CDS | 5613980 | 1389 | - | 0.649388 |
| NA | Psyr_1873 | Glutamine amidotransferase class-I | SubName: Full=Glutamine amidotransferase class-I; | chromosome | CDS | 2148483 | 729 | + | 0.572016 |
| NA | Psyr_3859 | Purine nucleoside permease | SubName: Full=Purine nucleoside permease; Flags: Precursor; | chromosome | CDS | 4599380 | 1032 | + | 0.625969 |
| NA | Psyr_3717 | Ribonucleoside-diphosphate reductase | RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; | chromosome | CDS | 4404442 | 2913 | + | 0.612084 |
| NA | Psyr_1551 | SAICAR synthetase | RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; | chromosome | CDS | 1744147 | 711 | + | 0.576653 |
| NA | Psyr_0676 | Xanthine/uracil permease family | SubName: Full=Xanthine/uracil permease family; | chromosome | CDS | 765956 | 1398 | - | 0.62804 |
| NA | Psyr_3883 | dCTP deaminase | RecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; | chromosome | CDS | 4624012 | 567 | - | 0.57672 |
| NA | Psyr_3721 | Ribonucleoside-diphosphate reductase | RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; | chromosome | CDS | 4409880 | 1248 | + | 0.585737 |
| NA | Psyr_0661 | Adenosine deaminase | RecName: Full=Adenine deaminase; Short=ADE; EC=3.5.4.2; AltName: Full=Adenine aminohydrolase; Short=AAH; | chromosome | CDS | 749365 | 954 | - | 0.614256 |
| NA | Psyr_1806 | Ureidoglycolate hydrolase | RecName: Full=Ureidoglycolate lyase; EC=4.3.2.3; AltName: Full=Ureidoglycolatase; | chromosome | CDS | 2079906 | 513 | - | 0.60039 |
| NA | Psyr_4491 | Deoxyribose-phosphate aldolase | RecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; | chromosome | CDS | 5352994 | 681 | + | 0.654919 |
| NA | Psyr_0076 | Xanthine phosphoribosyltransferase | RecName: Full=Xanthine phosphoribosyltransferase; Short=XPRTase; EC=2.4.2.22; | chromosome | CDS | 81563 | 570 | + | 0.598246 |
| NA | Psyr_0577 | Adenylosuccinate synthetase | RecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; | chromosome | CDS | 655874 | 1293 | + | 0.605568 |
| NA | Psyr_2106 | Dihydroorotate dehydrogenase 2 | RecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; | chromosome | CDS | 2458192 | 1032 | + | 0.630814 |
| NA | Psyr_3643 | Cytidylate kinase | RecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; | chromosome | CDS | 4325805 | 690 | - | 0.614493 |
| NA | Psyr_2657 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3227281 | 840 | + | 0.534524 |
| NA | Psyr_4406 | AICARFT/IMPCHase bienzyme | RecName: Full=Bifunctional purine biosynthesis protein PurH; | chromosome | CDS | 5267706 | 1617 | + | 0.625232 |
| NA | Psyr_3894 | Dihydroorotase homodimeric type | RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; | chromosome | CDS | 4635863 | 1044 | + | 0.62069 |
| NA | Psyr_0969 | Uracil phosphoribosyl transferase | RecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; | chromosome | CDS | 1102981 | 639 | - | 0.615023 |
| NA | Psyr_2082 | membrane protein, putative | SubName: Full=Membrane protein, putative; | chromosome | CDS | 2427303 | 1536 | - | 0.597005 |
| NA | Psyr_1277 | Phosphoribosylglycinamide formyltransferase 2 | RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; | chromosome | CDS | 1442343 | 1182 | + | 0.624366 |
| NA | Psyr_2561 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2975104 | 588 | + | 0.590136 |
| NA | Psyr_2556 | similar to Deoxycytidine deaminase | SubName: Full=dCTP deaminase; EC=3.5.4.13; | chromosome | CDS | 2969153 | 675 | + | 0.574815 |
| NA | Psyr_0248 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 261247 | 321 | - | 0.573209 |
| NA | Psyr_0216 | Orotate phosphoribosyl transferase | RecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; | chromosome | CDS | 229459 | 642 | + | 0.607477 |
| NA | Psyr_1244 | Nucleoside-diphosphate kinase | RecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; | chromosome | CDS | 1399945 | 426 | + | 0.565728 |
| NA | Psyr_0177 | Adenylate cyclase | SubName: Full=Adenylate cyclase; EC=4.6.1.1; | chromosome | CDS | 190574 | 2847 | + | 0.609765 |
| NA | Psyr_0481 | Amidohydrolase | RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; | chromosome | CDS | 519207 | 1272 | - | 0.67217 |
| NA | Psyr_2239 | DNA/RNA non-specific endonuclease | SubName: Full=DNA/RNA non-specific endonuclease; | chromosome | CDS | 2602454 | 945 | - | 0.6 |
| NA | Psyr_3776 | Cytosine deaminase | SubName: Full=Cytosine deaminase; EC=3.5.4.1; | chromosome | CDS | 4495335 | 438 | - | 0.579909 |
| NA | Psyr_1652 | Thymidylate kinase | RecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; | chromosome | CDS | 1857020 | 633 | + | 0.64139 |
| NA | Psyr_1807 | Allantoicase | RecName: Full=Probable allantoicase; EC=3.5.3.4; AltName: Full=Allantoate amidinohydrolase; | chromosome | CDS | 2080620 | 996 | - | 0.62249 |
| NA | Psyr_5047 | Phosphoribosylaminoimidazole carboxylase, ATPase subunit | SubName: Full=5-(Carboxyamino)imidazole ribonucleotide synthase; EC=4.1.1.21; | chromosome | CDS | 5988256 | 1083 | - | 0.621422 |
| NA | Psyr_4407 | Phosphoribosylglycinamide synthetase | RecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; | chromosome | CDS | 5269495 | 1296 | + | 0.613426 |
| NA | Psyr_2157 | Inosine/uridine-preferring nucleoside hydrolase | SubName: Full=Inosine/uridine-preferring nucleoside hydrolase; Flags: Precursor; | chromosome | CDS | 2512612 | 1026 | + | 0.598441 |
| NA | Psyr_4192 | Carbamoyl-phosphate synthase, small subunit | RecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; | chromosome | CDS | 4987054 | 1137 | - | 0.608619 |
| NA | Psyr_3192 | Adenylosuccinate lyase | SubName: Full=Adenylosuccinate lyase; EC=4.3.2.2; | chromosome | CDS | 3821398 | 1419 | + | 0.600423 |
| NA | Psyr_3690 | Phosphoribosylglycinamide formyltransferase | SubName: Full=Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; EC=2.1.2.2; | chromosome | CDS | 4376732 | 651 | + | 0.614439 |
| NA | Psyr_0801 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 906688 | 999 | + | 0.605606 |
| NA | Psyr_1361 | CTP synthase | RecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; | chromosome | CDS | 1544354 | 1632 | + | 0.601103 |
| NA | Psyr_0483 | Uracil phosphoribosyltransferase | RecName: Full=Bifunctional protein PyrR; Includes: RecName: Full=Pyrimidine operon regulatory protein; Includes: RecName: Full=Uracil phosphoribosyltransferase; Short=UPRTase; EC=2.4.2.9; | chromosome | CDS | 521492 | 513 | - | 0.635478 |
| NA | Psyr_0367 | Formiminoglutamate deiminase | SubName: Full=Formimidoylglutamate deiminase; EC=3.5.3.13; | chromosome | CDS | 391324 | 1365 | + | 0.641026 |
| NA | Psyr_0482 | Aspartate carbamoyltransferase | RecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; | chromosome | CDS | 520475 | 1005 | - | 0.634826 |
| NA | Psyr_3426 | Adenine phosphoribosyl transferase | RecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; | chromosome | CDS | 4090266 | 549 | + | 0.591985 |
| NA | Psyr_4191 | Carbamoyl-phosphate synthase, large subunit, glutamine-dependent | RecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; Flags: Precursor; | chromosome | CDS | 4983696 | 3222 | - | 0.598386 |
| NA | Psyr_4337 | AMP nucleosidase | SubName: Full=AMP nucleosidase; EC=3.2.2.4; | chromosome | CDS | 5188303 | 1464 | - | 0.627732 |
| NA | Psyr_4018 | Formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate deformylase; | chromosome | CDS | 4785483 | 852 | - | 0.584507 |
| NA | Psyr_0970 | Phosphoribosyltransferase | SubName: Full=Phosphoribosyltransferase; | chromosome | CDS | 1103827 | 558 | + | 0.589606 |
| NA | Psyr_0545 | Permease for cytosine/purines, uracil, thiamine, allantoin | SubName: Full=Permease for cytosine/purines, uracil, thiamine, allantoin; | chromosome | CDS | 617494 | 1290 | + | 0.633333 |
| NA | Psyr_1272 | NUDIX hydrolase | SubName: Full=NUDIX hydrolase; | chromosome | CDS | 1438297 | 552 | - | 0.592391 |
| NA | Psyr_0472 | Ham1-like protein | RecName: Full=Non-canonical purine NTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; | chromosome | CDS | 511604 | 594 | - | 0.646465 |
| NA | Psyr_1269 | Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria | RecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; | chromosome | CDS | 1433337 | 3897 | + | 0.617655 |
| NA | Psyr_0944 | Ribose-phosphate pyrophosphokinase | RecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; | chromosome | CDS | 1079101 | 942 | - | 0.557325 |
| NA | Psyr_2922 | Permease for cytosine/purines, uracil, thiamine, allantoin | SubName: Full=Permease for cytosine/purines, uracil, thiamine, allantoin; | chromosome | CDS | 3510456 | 1470 | + | 0.62517 |
| NA | Psyr_2125 | Fumarate lyase | SubName: Full=3-carboxy-cis,cis-muconate cycloisomerase; EC=5.5.1.2; | chromosome | CDS | 2482758 | 1362 | + | 0.648311 |
| NA | Psyr_5048 | 1-(5-Phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase | RecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; | chromosome | CDS | 5989348 | 492 | - | 0.607724 |
| NA | Psyr_3110 | Nucleoside 2-deoxyribosyltransferase | SubName: Full=Nucleoside 2-deoxyribosyltransferase; | chromosome | CDS | 3727715 | 519 | + | 0.606936 |
| NA | Psyr_1836 | Orotidine 5'-phosphate decarboxylase | RecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; | chromosome | CDS | 2116402 | 735 | + | 0.647619 |
| NA | Psyr_3689 | Phosphoribosylformylglycinamidine cyclo-ligase | RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; | chromosome | CDS | 4375674 | 1059 | + | 0.625118 |
| NA | Psyr_0220 | DeoxyUTP pyrophosphatase, subfamily 1 | RecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; | chromosome | CDS | 234646 | 456 | - | 0.625 |
| NA | Psyr_0669 | Amidohydrolase | SubName: Full=Amidohydrolase; | chromosome | CDS | 757959 | 1356 | - | 0.637906 |
| NA | Psyr_3240 | CTP synthase | SubName: Full=CTP synthase; EC=6.3.4.2; | chromosome | CDS | 3879008 | 723 | - | 0.656985 |
| NA | Psyr_1262 | GMP synthase, C-terminal:GMP synthase, N-terminal | RecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; | chromosome | CDS | 1419709 | 1578 | + | 0.6109 |
| NA | Psyr_4573 | Histidine triad (HIT) protein | SubName: Full=Histidine triad (HIT) protein; | chromosome | CDS | 5436921 | 339 | + | 0.557522 |
| NA | Psyr_3531 | Permease for cytosine/purines, uracil, thiamine, allantoin | SubName: Full=Permease for cytosine/purines, uracil, thiamine, allantoin; | chromosome | CDS | 4207489 | 1452 | + | 0.607438 |
| NA | Psyr_3649 | Amidohydrolase | SubName: Full=Amidohydrolase; | chromosome | CDS | 4334816 | 1332 | + | 0.641892 |
| NA | Psyr_2555 | (dCTP deaminase), deoxycytidine triphosphate deaminase | SubName: Full=(DCTP deaminase), deoxycytidine triphosphate deaminase; | chromosome | CDS | 2968638 | 513 | + | 0.588694 |
| NA | Psyr_1814 | Xanthine dehydrogenase | SubName: Full=Xanthine dehydrogenase, molybdenum binding subunit apoprotein; EC=1.17.1.4; | chromosome | CDS | 2087371 | 2520 | - | 0.620635 |
| NA | Psyr_1345 | Aspartate/glutamate/uridylate kinase | RecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; | chromosome | CDS | 1525220 | 741 | + | 0.580297 |
| NA | Psyr_0968 | Xanthine/uracil permease family | SubName: Full=Xanthine/uracil permease family; | chromosome | CDS | 1101699 | 1278 | - | 0.613459 |
| NA | Psyr_1815 | Ferredoxin:Molybdopterin dehydrogenase, FAD-binding:[2Fe-2S]-binding:CO dehydrogenase flavoprotein, C-terminal | SubName: Full=Ferredoxin:Molybdopterin dehydrogenase, FAD-binding:[2Fe-2S]-binding:CO dehydrogenase flavoprotein, C-terminal; | chromosome | CDS | 2089883 | 1455 | - | 0.604811 |
| NA | Psyr_1319 | Adenylate kinase, subfamily | RecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; | chromosome | CDS | 1498072 | 648 | + | 0.591049 |
| NA | Psyr_1728 | tRNA--hydroxylase | SubName: Full=tRNA--hydroxylase; | chromosome | CDS | 1962478 | 612 | + | 0.599673 |
| NA | Psyr_2226 | Formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate deformylase; EC=3.5.1.10; | chromosome | CDS | 2587752 | 867 | - | 0.591695 |
| NA | Psyr_2116 | Deoxyguanosinetriphosphate triphosphohydrolase | SubName: Full=Deoxyguanosinetriphosphate triphosphohydrolase; EC=3.1.5.1; | chromosome | CDS | 2474655 | 1332 | - | 0.616366 |
| NA | Psyr_1812 | Amidohydrolase | SubName: Full=Guanine deaminase; EC=3.5.4.3; | chromosome | CDS | 2085204 | 1335 | - | 0.611985 |
| NA | Psyr_0839 | Deoxyribose-phosphate aldolase | SubName: Full=Deoxyribose-phosphate aldolase; EC=4.1.2.4; | chromosome | CDS | 950669 | 786 | + | 0.618321 |
| NA | Psyr_4717 | Formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate deformylase; EC=3.5.1.10; | chromosome | CDS | 5590242 | 858 | + | 0.579254 |
| NA | Psyr_0803 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 908947 | 1134 | + | 0.62522 |
| NA | Psyr_2404 | NUDIX hydrolase | SubName: Full=NUDIX hydrolase; | chromosome | CDS | 2785952 | 564 | - | 0.597518 |
| NA | Psyr_0211 | Guanylate kinase | RecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; | chromosome | CDS | 225581 | 645 | - | 0.603101 |
| NA | Psyr_0294 | Exopolyphosphatase | SubName: Full=Exopolyphosphatase; EC=3.6.1.11; | chromosome | CDS | 313637 | 1581 | - | 0.609108 |
| NA | Psyr_1401 | Histidine triad (HIT) protein | SubName: Full=Histidine triad (HIT) protein; | chromosome | CDS | 1588962 | 432 | + | 0.55787 |
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