Gene list
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COG category: Nucleotide transport and metabolism
Organism: Pseudomonas syringae pv. phaseolicola 1448A, 1448A; BAA-978
Number of genes found: 89
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| Pseudomonas syringae pv. phaseolicola 1448A, 1448A; BAA-978 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | PSPPH_4309 | Deoxycytidine triphosphate deaminase (dCTP deaminase) | SubName: Full=Deoxycytidine triphosphate deaminase (DCTP deaminase); EC=3.5.4.13; | chromosome | CDS | 4922740 | 519 | - | 0.510597 |
| NA | PSPPH_2471 | inosine-uridine preferring nucleoside hydrolase | SubName: Full=Inosine-uridine preferring nucleoside hydrolase; EC=3.2.2.1; | chromosome | CDS | 2853122 | 999 | - | 0.536537 |
| NA | PSPPH_0236 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 272723 | 321 | - | 0.570093 |
| NA | PSPPH_1403 | purine nucleoside permease, putative | SubName: Full=Purine nucleoside permease, putative; | chromosome | CDS | 1626510 | 1032 | - | 0.617248 |
| NA | PSPPH_2131 | inosine/uridine-preferring nucleoside hydrolase | SubName: Full=Inosine/uridine-preferring nucleoside hydrolase; EC=3.2.2.1; | chromosome | CDS | 2488017 | 1026 | + | 0.592593 |
| NA | PSPPH_4558 | mutT domain protein-like | SubName: Full=MutT domain protein-like protein; | chromosome | CDS | 5197852 | 774 | - | 0.497416 |
| NA | PSPPH_0537 | cytosine/purine/uracil/thiamine/allantoin permease family protein | SubName: Full=Cytosine/purine/uracil/thiamine/allantoin permease family protein; | chromosome | CDS | 632079 | 336 | + | 0.622024 |
| NA | PSPPH_3021 | Nucleoside 2-deoxyribosyltransferase | SubName: Full=Nucleoside 2-deoxyribosyltransferase; | chromosome | CDS | 3507698 | 516 | + | 0.565891 |
| NA | PSPPH_2948 | DNA/RNA non-specific endonuclease | SubName: Full=DNA/RNA non-specific endonuclease; | chromosome | CDS | 3421601 | 945 | + | 0.583069 |
| NA | PSPPH_1381 | deoxycytidine triphosphate deaminase, putative | RecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; | chromosome | CDS | 1602564 | 567 | + | 0.553792 |
| NA | PSPPH_0472 | dihydroorotase, multifunctional complex type | RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; | chromosome | CDS | 535569 | 1272 | - | 0.654874 |
| NA | PSPPH_1774 | xanthine dehydrogenase, C-terminal subunit | SubName: Full=Xanthine dehydrogenase, C-terminal subunit; EC=1.17.1.4; | chromosome | CDS | 2072136 | 2520 | - | 0.606746 |
| NA | PSPPH_4302 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4913517 | 1266 | - | 0.432859 |
| NA | PSPPH_1767 | allantoicase | RecName: Full=Probable allantoicase; EC=3.5.3.4; AltName: Full=Allantoate amidinohydrolase; | chromosome | CDS | 2065122 | 996 | - | 0.613454 |
| NA | PSPPH_3477 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4018904 | 315 | - | 0.501587 |
| NA | PSPPH_3472 | cytosine/purine/uracil/thiamine/allantoin permease family protein | SubName: Full=Cytosine/purine/uracil/thiamine/allantoin permease family protein; | chromosome | CDS | 4011243 | 1452 | + | 0.597107 |
| NA | PSPPH_3160 | CTP synthase domain protein | SubName: Full=CTP synthase domain protein; | chromosome | CDS | 3663002 | 735 | - | 0.623129 |
| NA | PSPPH_0826 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 989323 | 999 | + | 0.602603 |
| NA | PSPPH_2711 | Deoxycytidine triphosphate deaminase (dCTP deaminase) | SubName: Full=Deoxycytidine triphosphate deaminase (DCTP deaminase); EC=3.5.4.13; | chromosome | CDS | 3138007 | 513 | + | 0.588694 |
| NA | PSPPH_2088 | deoxyguanosinetriphosphate triphosphohydrolase, putative | SubName: Full=Deoxyguanosinetriphosphate triphosphohydrolase, putative; | chromosome | CDS | 2449709 | 1341 | - | 0.598807 |
| NA | PSPPH_3781 | histidine triad family protein VC2075 | SubName: Full=Histidine triad family protein VC2075; | chromosome | CDS | 4329604 | 432 | - | 0.534722 |
| NA | PSPPH_0596 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 704165 | 714 | - | 0.394958 |
| NA | PSPPH_4621 | xanthine/uracil permease family protein | SubName: Full=Xanthine/uracil permease family protein; | chromosome | CDS | 5256990 | 1398 | + | 0.601574 |
| NA | PSPPH_0680 | HIT family protein | SubName: Full=HIT family protein; | chromosome | CDS | 795157 | 339 | - | 0.530973 |
| NA | PSPPH_4628 | amidhohydrolase family protein | SubName: Full=Amidhohydrolase family protein; | chromosome | CDS | 5264938 | 1356 | + | 0.632006 |
| NA | PSPPH_3669 | hydrolase, Atz/Trz family | SubName: Full=Hydrolase, Atz/Trz family; | chromosome | CDS | 4216337 | 1332 | + | 0.62988 |
| NA | PSPPH_2588 | mutT/nudix family protein | SubName: Full=MutT/nudix family protein; | chromosome | CDS | 2979804 | 363 | - | 0.550964 |
| NA | PSPPH_1339 | cytidine/deoxycytidylate deaminase family protein | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome | CDS | 1554911 | 510 | + | 0.603922 |
| NA | PSPPH_3434 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3969101 | 303 | + | 0.633663 |
| add | PSPPH_4636 | adenosine deaminase | RecName: Full=Adenine deaminase; Short=ADE; EC=3.5.4.2; AltName: Full=Adenine aminohydrolase; Short=AAH; | chromosome | CDS | 5273903 | 954 | + | 0.591195 |
| adk | PSPPH_3863 | adenylate kinase | RecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; | chromosome | CDS | 4417695 | 648 | - | 0.570988 |
| allA | PSPPH_1766 | ureidoglycolate hydrolase | RecName: Full=Ureidoglycolate lyase; EC=4.3.2.3; AltName: Full=Ureidoglycolatase; | chromosome | CDS | 2064367 | 513 | - | 0.576998 |
| amn | PSPPH_4379 | AMP nucleosidase | SubName: Full=AMP nucleosidase; EC=3.2.2.4; | chromosome | CDS | 5000503 | 1464 | - | 0.619536 |
| apt | PSPPH_3352 | adenine phosphoribosyltransferase | RecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; | chromosome | CDS | 3880449 | 549 | + | 0.566485 |
| carA | PSPPH_4203 | carbamoyl-phosphate synthase, small subunit | RecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; | chromosome | CDS | 4791562 | 1137 | - | 0.593668 |
| carB | PSPPH_4202 | carbamoyl-phosphate synthase, large subunit | RecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; | chromosome | CDS | 4788204 | 3222 | - | 0.591558 |
| cdd | PSPPH_1477 | cytosine deaminase | SubName: Full=Cytosine deaminase; EC=3.5.4.1; | chromosome | CDS | 1716268 | 438 | + | 0.579909 |
| cmk | PSPPH_3663 | cytidylate kinase | RecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; | chromosome | CDS | 4207317 | 690 | - | 0.611594 |
| cyaA | PSPPH_5013 | adenylate cyclase, class I | SubName: Full=Adenylate cyclase, class I; EC=4.6.1.1; | chromosome | CDS | 5678763 | 2847 | - | 0.598173 |
| cytX | PSPPH_0536 | probable hydroxymethylpyrimidine transporter CytX | SubName: Full=Probable hydroxymethylpyrimidine transporter CytX; | chromosome | CDS | 630951 | 1119 | + | 0.61126 |
| dcd1 | PSPPH_2712 | Deoxycytidine triphosphate deaminase (dCTP deaminase) | SubName: Full=Deoxycytidine triphosphate deaminase (DCTP deaminase); EC=3.5.4.13; | chromosome | CDS | 3138522 | 678 | + | 0.548673 |
| dcd2 | PSPPH_4308 | Deoxycytidine triphosphate deaminase (dCTP deaminase) | SubName: Full=Deoxycytidine triphosphate deaminase (DCTP deaminase); EC=3.5.4.13; | chromosome | CDS | 4922183 | 561 | - | 0.463458 |
| deoC | PSPPH_0865 | deoxyribose-phosphate aldolase | SubName: Full=Deoxyribose-phosphate aldolase; EC=4.1.2.4; | chromosome | CDS | 1034753 | 780 | + | 0.598718 |
| dut | PSPPH_0208 | deoxyuridine 5'-triphosphate nucleotidohydrolase | RecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; | chromosome | CDS | 245948 | 456 | - | 0.611842 |
| gmk | PSPPH_0199 | guanylate kinase | RecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; | chromosome | CDS | 237007 | 666 | - | 0.584084 |
| guaA | PSPPH_1334 | GMP synthase | RecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; | chromosome | CDS | 1545226 | 1578 | + | 0.6109 |
| guaD | PSPPH_1772 | guanine aminohydrolase | SubName: Full=Guanine aminohydrolase; EC=3.5.4.3; | chromosome | CDS | 2069969 | 1314 | - | 0.58067 |
| hpt | PSPPH_1019 | hypoxanthine phosphoribosyltransferase | SubName: Full=Hypoxanthine phosphoribosyltransferase; EC=2.4.2.8; | chromosome | CDS | 1210151 | 558 | + | 0.577061 |
| hutF | PSPPH_0350 | formiminoglutamate deiminase | SubName: Full=Formiminoglutamate deiminase; EC=3.5.3.13; | chromosome | CDS | 397568 | 1365 | + | 0.620513 |
| miaE | PSPPH_3556 | tRNA-(ms[2]io[6]A)-hydroxylase | SubName: Full=tRNA-(Ms[2]io[6]A)-hydroxylase; EC=1.-.-.-; | chromosome | CDS | 4092078 | 648 | - | 0.566358 |
| mtaP | PSPPH_3200 | methylthioadenosine phosphorylase | RecName: Full=Probable S-methyl-5-thioinosine phosphorylase; EC=2.4.2.44; AltName: Full=5-methylthioinosine phosphorylase; AltName: Full=Purine nucleoside phosphorylase; | chromosome | CDS | 3711454 | 741 | - | 0.596491 |
| mutT1 | PSPPH_1344 | mutT/nudix family protein | SubName: Full=MutT/nudix family protein; EC=3.6.1.-; | chromosome | CDS | 1562110 | 552 | - | 0.577899 |
| mutT2 | PSPPH_2562 | mutT/nudix family protein | SubName: Full=MutT/nudix family protein; EC=3.6.1.13; | chromosome | CDS | 2954127 | 564 | - | 0.599291 |
| ndk | PSPPH_1316 | Nucleoside diphosphate kinase (NDK) (NDP kinase)(Nucleoside-2-P kinase) | RecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; | chromosome | CDS | 1525372 | 426 | + | 0.56338 |
| nrdA | PSPPH_3738 | ribonucleoside-diphosphate reductase, alpha subunit | RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; | chromosome | CDS | 4285909 | 2913 | + | 0.607964 |
| nrdB | PSPPH_3745 | ribonucleoside-diphosphate reductase, beta subunit | RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; | chromosome | CDS | 4295151 | 1248 | + | 0.579327 |
| pcaB | PSPPH_2099 | 3-carboxy-cis,cis-muconate cycloisomerase | SubName: Full=3-carboxy-cis,cis-muconate cycloisomerase; EC=5.5.1.2; | chromosome | CDS | 2457799 | 1362 | + | 0.638767 |
| ppx | PSPPH_0281 | exopolyphosphatase | SubName: Full=Exopolyphosphatase; EC=3.6.1.11; | chromosome | CDS | 324236 | 1503 | - | 0.604125 |
| prsA | PSPPH_0991 | Ribose-phosphate pyrophosphokinase (RPPK) (Phosphoribosylpyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) | RecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; | chromosome | CDS | 1185154 | 942 | - | 0.549894 |
| purA | PSPPH_0570 | adenylosuccinate synthetase | RecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; | chromosome | CDS | 669656 | 1293 | + | 0.590101 |
| purB | PSPPH_3104 | adenylosuccinate lyase | SubName: Full=Adenylosuccinate lyase; EC=4.3.2.2; | chromosome | CDS | 3601989 | 1371 | + | 0.589351 |
| purC | PSPPH_1540 | phosphoribosylaminoimidazole-succinocarboxamidesynthase | RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; | chromosome | CDS | 1794100 | 711 | + | 0.561181 |
| purD | PSPPH_4450 | phosphoribosylamine--glycine ligase | RecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; | chromosome | CDS | 5082975 | 1353 | + | 0.59867 |
| purE | PSPPH_5130 | phosphoribosylaminoimidazole carboxylase, catalytic subunit | SubName: Full=Phosphoribosylaminoimidazole carboxylase, catalytic subunit; EC=4.1.1.21; | chromosome | CDS | 5818439 | 648 | - | 0.612654 |
| purF | PSPPH_1662 | amidophosphoribosyltransferase | RecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; | chromosome | CDS | 1923914 | 1509 | + | 0.58118 |
| purH | PSPPH_4449 | bifunctional purine biosynthesis protein PurH | RecName: Full=Bifunctional purine biosynthesis protein PurH; | chromosome | CDS | 5081298 | 1617 | + | 0.612245 |
| purK | PSPPH_5129 | phosphoribosylaminoimidazole carboxylase, ATPase subunit | SubName: Full=Phosphoribosylaminoimidazole carboxylase, ATPase subunit; EC=4.1.1.21; | chromosome | CDS | 5817347 | 1083 | - | 0.617729 |
| purL | PSPPH_1341 | phosphoribosylformylglycinamidine synthase | RecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; | chromosome | CDS | 1557076 | 3942 | + | 0.608828 |
| purM | PSPPH_3710 | phosphoribosylformylglycinamidine cyclo-ligase | RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; | chromosome | CDS | 4257093 | 1059 | + | 0.622285 |
| purN | PSPPH_3711 | phosphoribosylglycinamide formyltransferase | SubName: Full=Phosphoribosylglycinamide formyltransferase; EC=2.1.2.2; | chromosome | CDS | 4258151 | 651 | + | 0.600614 |
| purT | PSPPH_1349 | phosphoribosylglycinamide formyltransferase 2 | RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; | chromosome | CDS | 1565079 | 1182 | + | 0.610829 |
| purU1 | PSPPH_2960 | formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate deformylase; EC=3.5.1.10; | chromosome | CDS | 3435545 | 867 | + | 0.569781 |
| purU2 | PSPPH_4024 | formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate deformylase; EC=3.5.1.10; | chromosome | CDS | 4598861 | 852 | - | 0.571596 |
| purU3 | PSPPH_4755 | formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate deformylase; EC=3.5.1.10; | chromosome | CDS | 5399394 | 858 | + | 0.568765 |
| pyrB | PSPPH_0473 | aspartate carbamoyltransferase | RecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; | chromosome | CDS | 536837 | 1005 | - | 0.626866 |
| pyrC | PSPPH_3888 | dihydroorotase, homodimeric type | RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; | chromosome | CDS | 4446958 | 1044 | + | 0.60728 |
| pyrD | PSPPH_2077 | dihydroorotate dehydrogenase | RecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; | chromosome | CDS | 2436415 | 1113 | + | 0.616352 |
| pyrE | PSPPH_0204 | orotate phosphoribosyltransferase | RecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; | chromosome | CDS | 240881 | 642 | + | 0.596573 |
| pyrF | PSPPH_1796 | orotidine 5'-phosphate decarboxylase | RecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; | chromosome | CDS | 2101452 | 777 | + | 0.635779 |
| pyrG | PSPPH_3822 | CTP synthase | RecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; | chromosome | CDS | 4372901 | 1632 | - | 0.591912 |
| pyrH | PSPPH_3838 | uridylate kinase | RecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; | chromosome | CDS | 4392941 | 744 | - | 0.576613 |
| pyrR | PSPPH_0474 | pyrimidine operon regulatory protein PyrR | RecName: Full=Bifunctional protein PyrR; Includes: RecName: Full=Pyrimidine operon regulatory protein; Includes: RecName: Full=Uracil phosphoribosyltransferase; Short=UPRTase; EC=2.4.2.9; | chromosome | CDS | 537854 | 513 | - | 0.619883 |
| rdgB | PSPPH_0463 | non-canonical purine NTP pyrophosphatase | RecName: Full=Non-canonical purine NTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; | chromosome | CDS | 527251 | 594 | - | 0.641414 |
| thyA | PSPPH_4872 | thymidylate synthase | RecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; | chromosome | CDS | 5540693 | 972 | - | 0.597737 |
| tmk | PSPPH_1646 | thymidylate kinase | RecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; | chromosome | CDS | 1908437 | 633 | + | 0.622433 |
| upp | PSPPH_1018 | uracil phosphoribosyltransferase | RecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; | chromosome | CDS | 1209305 | 639 | - | 0.599374 |
| uraA | PSPPH_1017 | uracil transporter | SubName: Full=Uracil transporter; | chromosome | CDS | 1208023 | 1278 | - | 0.599374 |
| xdhA | PSPPH_1775 | xanthine dehydrogenase | SubName: Full=Xanthine dehydrogenase; EC=1.17.1.4; | chromosome | CDS | 2074648 | 1455 | - | 0.597938 |
| xpt | PSPPH_0081 | xanthine phosphoribosyltransferase | RecName: Full=Xanthine phosphoribosyltransferase; Short=XPRTase; EC=2.4.2.22; | chromosome | CDS | 88548 | 570 | + | 0.589474 |
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