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2024-05-25 17:55:01

Gene list

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COG category: Nucleotide transport and metabolism
Organism: Silicibacter pomeroyi DSS-3, DSS-3

Number of genes found: 86

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Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SPO1859 phosphatase, Ppx/GppA familySubName: Full=Phosphatase, Ppx/GppA family; chromosome CDS1977989 1113 - 0.667565
NA SPOA0012 DNA topology modulation kinase FlaR, putativeSubName: Full=DNA topology modulation kinase FlaR, putative; megaplasmid CDS10680 513 + 0.62768
NA SPO1386 HIT family protein chromosome CDS1453104 423 + 0.640662
NA SPO0007 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 familyRecName: Full=Non-canonical purine NTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase; chromosome CDS5683 615 - 0.642276
NA SPO1117 phosphatase, Ppx/GppA familySubName: Full=Phosphatase, Ppx/GppA family; chromosome CDS1173336 1545 - 0.67055
NA SPO1897 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2022105 1233 + 0.665856
NA SPO0874 xanthine/uracil permease family proteinSubName: Full=Xanthine/uracil permease family protein; chromosome CDS930939 1413 + 0.646143
NA SPO2987 lipoprotein, putativeSubName: Full=Lipoprotein, putative; chromosome CDS3184553 963 + 0.672897
NA SPO3542 2`,3`-cyclic-nucleotide 2`-phosphodiesterase, putativeSubName: Full=2`,3`-cyclic-nucleotide 2`-phosphodiesterase, putative; chromosome CDS3752853 1872 + 0.660791
NA SPO3045 glutamine amidotransferase, class ISubName: Full=Glutamine amidotransferase, class I; chromosome CDS3256591 804 - 0.624378
NA SPO1532 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1613519 708 - 0.675141
NA SPO2806 cytosine deaminase, putativeSubName: Full=Cytosine deaminase, putative; chromosome CDS2995007 1293 + 0.655839
NA SPO0294 hydrolase, NUDIX familySubName: Full=Hydrolase, NUDIX family; chromosome CDS308364 420 - 0.67381
NA SPOA0083 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS79377 1104 - 0.499094
NA SPO2983 cytidine and deoxycytidylate deaminase family proteinRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS3180552 480 - 0.729167
NA SPO2113 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2250313 924 + 0.632035
NA SPO0284 dihydroorotase, multifunctional complex typeRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS296987 1290 - 0.667442
NA SPO2498 2''-deoxycytidine 5''-triphosphate deaminase, homologSubName: Full=2-deoxycytidine 5-triphosphate deaminase-like protein; chromosome CDS2645535 1080 + 0.646296
NA SPO0394 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS405948 192 - 0.614583
NA SPOA0205 serine protease, subtilase familySubName: Full=Serine protease, subtilase family; megaplasmid CDS221560 2766 - 0.69812
NA SPO2904 Ser/Thr protein phosphatase/nucleotidase, putativeSubName: Full=Ser/Thr protein phosphatase/nucleotidase, putative; chromosome CDS3105486 1575 - 0.631111
NA SPO2505 deoxyguanosinetriphosphate triphosphohydrolase, putativeRecName: Full=Deoxyguanosinetriphosphate triphosphohydrolase-like protein; chromosome CDS2652350 1158 - 0.658031
NA SPO2957 hydroxydechloroatrazine ethylaminohydrolase, putativeSubName: Full=Hydroxydechloroatrazine ethylaminohydrolase, putative; chromosome CDS3156593 1335 - 0.674906
NA SPO2653 dihydroorotase, homodimeric typeRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS2807766 1041 + 0.654179
NA SPO2956 guanine deaminase, putativeSubName: Full=Guanine deaminase, putative; chromosome CDS3155229 1284 + 0.654206
NA SPO0819 amidohydrolase domain proteinSubName: Full=Amidohydrolase domain protein; chromosome CDS851411 1167 + 0.646101
NA SPO1301 glutamine amidotransferase, class ISubName: Full=Glutamine amidotransferase, class I; chromosome CDS1365921 681 - 0.638767
NA SPO0763 glutamine amidotransferase, class ISubName: Full=Glutamine amidotransferase, class I; chromosome CDS794968 714 - 0.659664
NA SPO1071 glutamine amidotransferase, class-ISubName: Full=Glutamine amidotransferase, class-I; chromosome CDS1127009 735 - 0.665306
NA SPO3194 ribonucleoside-diphosphate reductase, putativeRecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS3405491 2283 + 0.638195
add SPO2927 adenosine deaminaseSubName: Full=Adenosine deaminase; EC=3.5.4.4; chromosome CDS3125593 1002 - 0.665669
ade SPO3746 adenine deaminaseRecName: Full=Adenine deaminase; Short=Adenase; Short=Adenine aminase; EC=3.5.4.2; chromosome CDS3957066 1779 - 0.66217
adk-1 SPO0507 adenylate kinaseRecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; chromosome CDS504909 642 + 0.637072
adk-2 SPO1812 adenylate kinase chromosome CDS1929739 669 - 0.674141
allA SPO0873 Ureidoglycolate hydrolaseSubName: Full=Ureidoglycolate hydrolase; EC=3.5.3.19; chromosome CDS930384 489 + 0.666667
amn SPO3745 AMP nucleosidaseSubName: Full=AMP nucleosidase; EC=3.2.2.4; chromosome CDS3955606 1464 - 0.64071
apt SPO3066 adenine phosphoribosyltransferaseRecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; chromosome CDS3274764 540 + 0.598148
carA SPO1377 carbamoyl-phosphate synthase, small subunitRecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; chromosome CDS1443878 1167 - 0.652099
carB SPO0923 carbamoyl-phosphate synthase, large subunitRecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; chromosome CDS977565 3369 - 0.646186
cdd SPO2930 cytidine deaminaseSubName: Full=Cytidine deaminase; EC=3.5.4.5; chromosome CDS3129113 393 - 0.666667
cmk SPOA0017 cytidylate kinaseRecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; megaplasmid CDS14273 618 + 0.679612
deoA SPO2929 thymidine phosphorylaseSubName: Full=Thymidine phosphorylase; EC=2.4.2.4; chromosome CDS3127799 1311 - 0.681922
deoC SPO3367 deoxyribose-phosphate aldolase chromosome CDS3567556 834 + 0.664269
deoD SPO0366 purine nucleoside phosphorylaseRecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; chromosome CDS379410 711 - 0.616034
dut SPO0409 deoxyuridine 5'-triphosphate nucleotidohydrolaseRecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; chromosome CDS421423 456 + 0.684211
fhs-1 SPO1557 formate--tetrahydrofolate ligaseRecName: Full=Formate--tetrahydrofolate ligase; EC=6.3.4.3; AltName: Full=Formyltetrahydrofolate synthetase; Short=FHS; Short=FTHFS; chromosome CDS1646655 1677 + 0.641622
fhs-2 SPO3103 formate--tetrahydrofolate ligaseRecName: Full=Formate--tetrahydrofolate ligase; EC=6.3.4.3; AltName: Full=Formyltetrahydrofolate synthetase; Short=FHS; Short=FTHFS; chromosome CDS3313292 1677 - 0.642815
gmk SPO1945 guanylate kinaseRecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; chromosome CDS2074509 642 + 0.624611
gpt SPO2143 xanthine-guanine phosphoribosyltransferaseRecName: Full=Xanthine phosphoribosyltransferase; EC=2.4.2.22; AltName: Full=Xanthine-guanine phosphoribosyltransferase; Short=XGPRT; chromosome CDS2277802 516 + 0.643411
guaA SPO2109 GMP synthaseRecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; chromosome CDS2245651 1560 + 0.633974
hpt SPO2097 hypoxanthine phosphoribosyltransferaseSubName: Full=Hypoxanthine phosphoribosyltransferase; EC=2.4.2.8; chromosome CDS2234645 543 + 0.60221
hutF SPO2194 formiminoglutamate deiminaseSubName: Full=Formiminoglutamate deiminase; EC=3.5.3.13; chromosome CDS2333251 1362 + 0.687225
hydA SPO1783 D-hydantoinaseSubName: Full=D-hydantoinase; EC=3.5.2.2; chromosome CDS1899626 1455 + 0.626117
iunH SPO2470 inosine-uridine preferring nucleoside hydrolaseSubName: Full=Inosine-uridine preferring nucleoside hydrolase; EC=3.2.2.1; chromosome CDS2622032 942 + 0.661359
mtaP SPO3060 methylthioadenosine phosphorylaseRecName: Full=S-methyl-5-thioadenosine phosphorylase; EC=2.4.2.28; AltName: Full=5-methylthioadenosine phosphorylase; chromosome CDS3270937 873 + 0.679267
ndk SPO2444 nucleoside diphosphate kinaseRecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; chromosome CDS2597384 423 - 0.624114
nrdJ SPO2136 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependentSubName: Full=Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; EC=1.17.4.1; chromosome CDS2270351 3645 - 0.622771
pcaB SPOA0432 3-carboxy-cis,cis-muconate cycloisomeraseSubName: Full=3-carboxy-cis,cis-muconate cycloisomerase; EC=5.5.1.2; megaplasmid CDS479797 1338 - 0.709268
prs SPO3159 ribose-phosphate pyrophosphokinaseRecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; chromosome CDS3366292 1020 + 0.617647
purA SPO1318 adenylosuccinate synthetaseRecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; chromosome CDS1380100 1293 - 0.655839
purB SPO2305 adenylosuccinate lyaseSubName: Full=Adenylosuccinate lyase; EC=4.3.2.2; chromosome CDS2441408 1305 + 0.631418
purC SPO1887 phosphoribosylaminoimidazole-succinocarboxamidesynthaseRecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; chromosome CDS2011211 756 + 0.607143
purD SPO1345 phosphoribosylamine--glycine ligaseRecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; chromosome CDS1405900 1263 + 0.672209
purE SPO0893 phosphoribosylaminoimidazole carboxylase, catalytic subunitRecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; chromosome CDS949706 489 - 0.699386
purF SPO2677 amidophosphoribosyltransferaseRecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; chromosome CDS2831183 1473 + 0.633401
purH SPO3374 bifunctional purine biosynthesis protein PurHRecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; chromosome CDS3575518 1590 - 0.660377
purK SPO0892 phosphoribosylaminoimidazole carboxylase, ATPase subunitSubName: Full=Phosphoribosylaminoimidazole carboxylase, ATPase subunit; EC=4.1.1.21; chromosome CDS948640 1074 - 0.675978
purL SPO1870 phosphoribosylformylglycinamidine synthase IIRecName: Full=Phosphoribosylformylglycinamidine synthase 2; EC=6.3.5.3; AltName: Full=Phosphoribosylformylglycinamidine synthase II; Short=FGAM synthase II; chromosome CDS1988722 2160 - 0.658333
purM SPO2169 phosphoribosylformylglycinamidine cyclo-ligaseRecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; chromosome CDS2305025 1047 - 0.673352
purN SPO2168 phosphoribosylglycinamide formyltransferaseSubName: Full=Phosphoribosylglycinamide formyltransferase; EC=2.1.2.2; chromosome CDS2304432 597 - 0.676717
purQ SPO1890 phosphoribosylformylglycinamidine synthase IRecName: Full=Phosphoribosylformylglycinamidine synthase 1; EC=6.3.5.3; AltName: Full=Phosphoribosylformylglycinamidine synthase I; Short=FGAM synthase I; chromosome CDS2013443 669 + 0.651719
purS SPO1888 phosphoribosylformylglycinamidine synthase, PurS proteinSubName: Full=Phosphoribosylformylglycinamidine synthase, PurS protein; chromosome CDS2012153 231 + 0.619048
pyrB SPO0287 aspartate carbamoyltransferaseRecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; chromosome CDS299165 936 - 0.633547
pyrD SPO2907 dihydroorotate dehydrogenaseSubName: Full=Dihydroorotate dehydrogenase; EC=1.3.98.1; chromosome CDS3107947 1053 + 0.689459
pyrE SPO2654 orotate phosphoribosyltransferaseRecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; chromosome CDS2808884 678 + 0.634218
pyrF SPO3278 orotidine 5'-phosphate decarboxylaseRecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; chromosome CDS3476646 735 + 0.661224
pyrG SPO1312 CTP synthaseRecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; chromosome CDS1375919 1644 - 0.629562
pyrH SPO1662 uridylate kinaseRecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; chromosome CDS1770258 756 + 0.636243
soxB SPO0997 sulfur oxidation B proteinSubName: Full=Sulfur oxidation B protein; chromosome CDS1047943 1704 + 0.633216
soxX SPO0993 monoheme cytochrome c SoxXSubName: Full=Monoheme cytochrome c SoxX; chromosome CDS1045605 486 + 0.658436
tdk SPO0914 thymidine kinaseRecName: Full=Thymidine kinase; EC=2.7.1.21; chromosome CDS968104 597 - 0.646566
thyX SPO1273 thymidylate synthase, flavin-dependentRecName: Full=Thymidylate synthase ThyX; Short=TS; Short=TSase; EC=2.1.1.148; chromosome CDS1340119 978 + 0.619632
tmk SPO2740 thymidylate kinaseRecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; chromosome CDS2932291 636 + 0.663522
upp SPO2926 uracil phosphoribosyltransferaseRecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; chromosome CDS3124964 633 - 0.635071
xdhA SPO0654 xanthine dehydrogenase, A subunitSubName: Full=Xanthine dehydrogenase, A subunit; EC=1.17.1.4; chromosome CDS676362 1386 - 0.657287
xdhB SPO0653 xanthine dehydrogenase, B subunitSubName: Full=Xanthine dehydrogenase, B subunit; EC=1.17.1.4; chromosome CDS674035 2331 - 0.667954