Gene list
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COG category: Nucleotide transport and metabolism
Organism: Vibrio fischeri ES114, ES114
Number of genes found: 87
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| Vibrio fischeri ES114, ES114 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | VFA0651 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome II | CDS | 724860 | 1170 | + | 0.32735 |
| NA | VF0778 | UDP-sugar diphosphatase | SubName: Full=Bifunctional UDP-sugar hydrolase/5-nucleotidase; EC=3.1.3.5; EC=3.6.1.45; | chromosome I | CDS | 850241 | 1659 | + | 0.382761 |
| NA | VFA0019 | hypoxanthine-guanine phosphoribosyltransferase | SubName: Full=Hypoxanthine-guanine phosphoribosyltransferase; EC=2.4.2.8; | chromosome II | CDS | 21110 | 525 | + | 0.367619 |
| NA | VF1599 | thymidine kinase | RecName: Full=Thymidine kinase; EC=2.7.1.21; | chromosome I | CDS | 1797915 | 579 | - | 0.364421 |
| NA | VF0106 | guanylate kinase | RecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; | chromosome I | CDS | 125429 | 624 | - | 0.402244 |
| NA | VF1714 | formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate hydrolase; EC=3.5.1.10; | chromosome I | CDS | 1933837 | 696 | + | 0.387931 |
| NA | VFA0281 | anaerobic ribonucleoside-triphosphate reductase | SubName: Full=Anaerobic ribonucleoside-triphosphate reductase; EC=1.17.4.2; | chromosome II | CDS | 312683 | 2121 | + | 0.388496 |
| NA | VFA0967 | nucleoside permease NupC | SubName: Full=Nucleoside permease NupC; | chromosome II | CDS | 1089845 | 1221 | + | 0.385749 |
| NA | VF1134 | HIT family hydrolase | SubName: Full=Purine nucleoside phosphoramidase; | chromosome I | CDS | 1260211 | 351 | + | 0.390313 |
| NA | VF1793 | formate--tetrahydrofolate ligase | RecName: Full=Formate--tetrahydrofolate ligase; EC=6.3.4.3; AltName: Full=Formyltetrahydrofolate synthetase; Short=FHS; Short=FTHFS; | chromosome I | CDS | 2028857 | 1749 | + | 0.406518 |
| NA | VFA0969 | guanine deaminase | SubName: Full=Guanine deaminase; EC=3.5.4.3; | chromosome II | CDS | 1091865 | 1347 | + | 0.389755 |
| NA | VF1498 | phosphoribosylamidoimidazole-succinocarboxamidesynthase | RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; | chromosome I | CDS | 1659472 | 1104 | + | 0.371377 |
| NA | VF0650 | tRNA-specific adenosine deaminase | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome I | CDS | 710874 | 516 | + | 0.422481 |
| NA | VFA0396 | 5'-nucleotidase | SubName: Full=5-nucleotidase; EC=3.1.3.5; | chromosome II | CDS | 449325 | 1740 | + | 0.368966 |
| NA | VF0764 | ribose-phosphate pyrophosphokinase | RecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; | chromosome I | CDS | 834867 | 999 | - | 0.433433 |
| NA | VF2538 | phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit | RecName: Full=N5-carboxyaminoimidazole ribonucleotide synthase; Short=N5-CAIR synthase; EC=6.3.4.18; AltName: Full=5-(carboxyamino)imidazole ribonucleotide synthetase; | chromosome I | CDS | 2867371 | 1113 | + | 0.371968 |
| NA | VF1960 | uridylate kinase | RecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; | chromosome I | CDS | 2195810 | 732 | - | 0.435792 |
| NA | VF1521 | uridine phosphorylase | RecName: Full=Uridine phosphorylase; EC=2.4.2.3; | chromosome I | CDS | 1702552 | 759 | - | 0.434783 |
| NA | VF2318 | adenylosuccinate synthetase | RecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; | chromosome I | CDS | 2612099 | 1317 | - | 0.432043 |
| NA | VF0092 | adenosine deaminase | chromosome I | CDS | 107129 | 693 | - | 0.406926 | |
| NA | VF1285 | dihydroorotate dehydrogenase | RecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; | chromosome I | CDS | 1436664 | 1011 | + | 0.391691 |
| NA | VF0625 | nucleoside diphosphate kinase | RecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; | chromosome I | CDS | 681981 | 435 | + | 0.416092 |
| NA | VF1201 | ribonucleoside-diphosphate reductase beta chain | SubName: Full=Ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein; EC=1.17.4.1; | chromosome I | CDS | 1337753 | 1134 | - | 0.368607 |
| NA | VF0067 | adenylate cyclase | SubName: Full=Adenylate cyclase; EC=4.6.1.1; | chromosome I | CDS | 75009 | 2448 | + | 0.396242 |
| NA | VF1264 | chlorohydrolase/deaminase family protein | SubName: Full=Predicted chlorohydrolase/aminohydrolase; | chromosome I | CDS | 1407803 | 1437 | + | 0.404315 |
| NA | VF1509 | isoaspartyl dipeptidase | RecName: Full=Isoaspartyl dipeptidase; EC=3.4.19.-; | chromosome I | CDS | 1685221 | 1137 | - | 0.37555 |
| NA | VFA0719 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome II | CDS | 811580 | 4842 | - | 0.371128 |
| NA | VF1691 | amidophosphoribosyltransferase | RecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; | chromosome I | CDS | 1906449 | 1515 | - | 0.4 |
| NA | VFA0917 | deoxycytidylate deaminase | SubName: Full=Deoxycytidylate deaminase; EC=3.5.4.12; | chromosome II | CDS | 1043243 | 444 | + | 0.385135 |
| NA | VF0793 | adenylate kinase | RecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; | chromosome I | CDS | 868232 | 645 | + | 0.431008 |
| NA | VF1653 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 1866772 | 816 | - | 0.386029 |
| NA | VF0054 | guanosine-5'-triphosphate,3'-diphosphatepyrophos phatase | RecName: Full=Guanosine-5-triphosphate,3-diphosphate pyrophosphatase; EC=3.6.1.40; AltName: Full=Guanosine pentaphosphate phosphohydrolase; AltName: Full=pppGpp-5-phosphohydrolase; | chromosome I | CDS | 61451 | 1494 | - | 0.430388 |
| NA | VF1156 | chlorohydrolase/deaminase family protein | SubName: Full=Chlorohydrolase/deaminase family protein; EC=3.8.1.8; | chromosome I | CDS | 1284164 | 1410 | + | 0.393617 |
| NA | VFA0968 | purine nucleoside phosphorylase | RecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; | chromosome II | CDS | 1091088 | 720 | + | 0.379167 |
| NA | VF1322 | nucleoside permease NupC | SubName: Full=Nucleoside permease NupC; | chromosome I | CDS | 1473510 | 1221 | + | 0.395577 |
| NA | VF0738 | xanthine-guanine phosphoribosyltransferase | RecName: Full=Xanthine phosphoribosyltransferase; EC=2.4.2.22; AltName: Full=Xanthine-guanine phosphoribosyltransferase; Short=XGPRT; | chromosome I | CDS | 805782 | 459 | + | 0.405229 |
| NA | VFA1029 | putative glycosyltransferase | SubName: Full=Glycosyl transferases group 1; EC=2.4.1.-; | chromosome II | CDS | 1162806 | 1164 | + | 0.359966 |
| NA | VF2076 | CTP synthase | RecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; | chromosome I | CDS | 2316476 | 1641 | - | 0.424741 |
| NA | VF0532 | cytosine permease | SubName: Full=Cytosine transporter; | chromosome I | CDS | 570432 | 1242 | - | 0.417874 |
| NA | VF0093 | adenosine deaminase | chromosome I | CDS | 107885 | 681 | - | 0.421439 | |
| NA | VF1752 | uridine kinase | RecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; | chromosome I | CDS | 1980871 | 648 | - | 0.381173 |
| NA | VF0504 | deoxyribose-phosphate aldolase | RecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; | chromosome I | CDS | 541712 | 777 | + | 0.401544 |
| NA | VF2176 | hypoxanthine-guanine phosphoribosyltransferase | SubName: Full=Hypoxanthine phosphoribosyltransferase; EC=2.4.2.8; | chromosome I | CDS | 2451307 | 531 | - | 0.361582 |
| NA | VF1062 | adenylosuccinate synthetase | RecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; | chromosome I | CDS | 1176332 | 1257 | - | 0.432776 |
| NA | VF1800 | HIT family hydrolase | SubName: Full=HIT family hydrolase; | chromosome I | CDS | 2037300 | 426 | + | 0.366197 |
| NA | VF1688 | adenine phosphoribosyltransferase | RecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; | chromosome I | CDS | 1903064 | 546 | - | 0.404762 |
| NA | VF0112 | orotate phosphoribosyltransferase | RecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; | chromosome I | CDS | 130512 | 648 | + | 0.419753 |
| NA | VF1487 | phosphoribosylglycinamide formyltransferase | RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; | chromosome I | CDS | 1648510 | 1176 | + | 0.42602 |
| NA | VF0531 | cytosine deaminase | SubName: Full=Cytosine deaminase; EC=3.5.4.1; | chromosome I | CDS | 569143 | 1278 | - | 0.385759 |
| NA | VF0405 | aspartate carbamoyltransferase regulatory chain | RecName: Full=Aspartate carbamoyltransferase regulatory chain; | chromosome I | CDS | 434177 | 465 | - | 0.367742 |
| NA | VFA0402 | purine nucleoside phosphorylase | RecName: Full=Purine nucleoside phosphorylase DeoD-type 2; Short=PNP 2; EC=2.4.2.1; | chromosome II | CDS | 457475 | 711 | - | 0.413502 |
| NA | VF1927 | uracil phosphoribosyltransferase | RecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; | chromosome I | CDS | 2161598 | 645 | - | 0.407752 |
| NA | VF2395 | phosphoribosylamine--glycine ligase | RecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; | chromosome I | CDS | 2690376 | 1293 | + | 0.449343 |
| NA | VF0319 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | SubName: Full=2:3-cyclic-nucleotide 2-phosphodiesterase; EC=3.1.4.16; | chromosome I | CDS | 327560 | 1983 | - | 0.395865 |
| NA | VF1511 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | SubName: Full=2,3-cyclic-nucleotide 2-phosphodiesterase; EC=3.1.3.6; EC=3.1.4.16; | chromosome I | CDS | 1687482 | 1905 | - | 0.369554 |
| NA | VF0502 | Nucleoside permease NupC | SubName: Full=Predicted nucleoside transporter; | chromosome I | CDS | 539723 | 1257 | + | 0.435959 |
| NA | VF0309 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 318724 | 231 | + | 0.376623 |
| NA | VFA0550 | hypothetical cytosolic protein | SubName: Full=Hypothetical cytosolic protein; | chromosome II | CDS | 633228 | 2112 | - | 0.405777 |
| NA | VF1755 | orotidine 5'-phosphate decarboxylase | RecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; | chromosome I | CDS | 1985008 | 705 | - | 0.411348 |
| NA | VF1929 | phosphoribosylglycinamide formyltransferase | SubName: Full=Phosphoribosylglycinamide formyltransferase 1; EC=2.1.2.2; | chromosome I | CDS | 2163614 | 642 | + | 0.392523 |
| NA | VF0652 | phosphoribosylformylglycinamidine synthase | RecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; | chromosome I | CDS | 713601 | 3912 | + | 0.474182 |
| NA | VF0472 | carbamoyl-phosphate synthase small chain | RecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; | chromosome I | CDS | 505159 | 1158 | + | 0.430915 |
| NA | VF0473 | carbamoyl-phosphate synthase large chain | RecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; | chromosome I | CDS | 506334 | 3231 | + | 0.438254 |
| NA | VFA0695 | GMP reductase | RecName: Full=GMP reductase; EC=1.7.1.7; AltName: Full=Guanosine 5-monophosphate oxidoreductase; Short=Guanosine monophosphate reductase; | chromosome II | CDS | 771569 | 1044 | - | 0.430077 |
| NA | VF2537 | phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit | RecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; AltName: Full=5-(carboxyamino)imidazole ribonucleotide mutase; | chromosome I | CDS | 2866883 | 486 | + | 0.438272 |
| NA | VFA0530 | uridine phosphorylase | SubName: Full=Uridine phosphorylase; EC=2.4.2.3; | chromosome II | CDS | 606099 | 735 | + | 0.4 |
| NA | VF0460 | thymidylate synthase | RecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; | chromosome I | CDS | 491884 | 858 | + | 0.386946 |
| NA | VF0406 | aspartate carbamoyltransferase | RecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; | chromosome I | CDS | 434655 | 930 | - | 0.407527 |
| NA | VF1735 | thymidylate kinase | RecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; | chromosome I | CDS | 1962183 | 633 | - | 0.402844 |
| NA | VF1928 | phosphoribosylformylglycinamidine cyclo-ligase | RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; | chromosome I | CDS | 2162450 | 1041 | + | 0.428434 |
| NA | VF0425 | xanthosine triphosphate pyrophosphatase | RecName: Full=Non-canonical purine NTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; | chromosome I | CDS | 455729 | 597 | - | 0.422111 |
| NA | VF0505 | thymidine phosphorylase | RecName: Full=Thymidine phosphorylase; EC=2.4.2.4; AltName: Full=TdRPase; | chromosome I | CDS | 542604 | 1332 | + | 0.412913 |
| NA | VF2065 | nucleoside permease NupC | SubName: Full=Nucleoside permease NupC; | chromosome I | CDS | 2306646 | 1215 | - | 0.398354 |
| NA | VF0507 | purine nucleoside phosphorylase | RecName: Full=Purine nucleoside phosphorylase DeoD-type 1; Short=PNP 1; EC=2.4.2.1; | chromosome I | CDS | 545250 | 717 | + | 0.407252 |
| NA | VF1202 | ribonucleoside-diphosphate reductase alpha chain | RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; | chromosome I | CDS | 1339059 | 2277 | - | 0.399209 |
| NA | VF0638 | GMP synthase [glutamine-hydrolyzing] | RecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; | chromosome I | CDS | 696099 | 1554 | + | 0.400901 |
| NA | VF0116 | xanthine permease | SubName: Full=Predicted transporter; | chromosome I | CDS | 134838 | 1392 | - | 0.435345 |
| NA | VF1926 | uracil permease | SubName: Full=Uracil transporter; | chromosome I | CDS | 2160286 | 1221 | + | 0.422604 |
| NA | VF1760 | cytidylate kinase | RecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; | chromosome I | CDS | 1989533 | 675 | - | 0.428148 |
| NA | VF1682 | deoxyguanosinetriphosphate triphosphohydrolase | RecName: Full=Deoxyguanosinetriphosphate triphosphohydrolase-like protein; | chromosome I | CDS | 1897110 | 1347 | + | 0.401633 |
| NA | VF1485 | cytidine deaminase | RecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA; | chromosome I | CDS | 1646154 | 894 | + | 0.419463 |
| NA | VF2128 | 5'-methylthioadenosine nucleosidase | RecName: Full=5-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Short=MTA/SAH nucleosidase; Short=MTAN; EC=3.2.2.9; AltName: Full=5-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase; | chromosome I | CDS | 2380042 | 696 | + | 0.403736 |
| NA | VF1492 | tRNA-(MS[2]IO[6]A)-hydroxylase | SubName: Full=tRNA-(MS(2)IO(6)A)-hydroxylase; EC=1.-.-.-; | chromosome I | CDS | 1654439 | 759 | - | 0.380764 |
| NA | VFA0412 | dihydroorotase | RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; | chromosome II | CDS | 465588 | 1029 | - | 0.400389 |
| NA | VF1786 | adenylosuccinate lyase | SubName: Full=Adenylosuccinate lyase; EC=4.3.2.2; | chromosome I | CDS | 2020073 | 1371 | + | 0.419402 |
| NA | VF1096 | nucleoside permease NupC | SubName: Full=Nucleoside permease NupC; | chromosome I | CDS | 1213545 | 1206 | + | 0.40796 |
| NA | VF2394 | phosphoribosylaminoimidazolecarboxamideformyltransferase | RecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; | chromosome I | CDS | 2688490 | 1593 | + | 0.47081 |
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