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2024-05-17 10:18:24

Gene list

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COG category: Nucleotide transport and metabolism
Organism: Photorhabdus luminescens subsp. laumondii TTO1, TTO1

Number of genes found: 86

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Photorhabdus luminescens subsp. laumondii TTO1, TTO1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA plu2403 SubName: Full=Complete genome; segment 9/17; chromosome CDS2823827 471 - 0.382166
NA plu0305 SubName: Full=Complete genome; segment 1/17; chromosome CDS323971 714 + 0.442577
NA plu0247 SubName: Full=Complete genome; segment 1/17; chromosome CDS263804 1386 - 0.472583
NA plu1440 SubName: Full=Complete genome; segment 5/17; chromosome CDS1731432 1254 + 0.434609
NA plu2859 SubName: Full=Complete genome; segment 10/17; chromosome CDS3394549 420 + 0.385714
NA plu0860 SubName: Full=Complete genome; segment 3/17; chromosome CDS989805 546 + 0.423077
NA plu3216 SubName: Full=Complete genome; segment 11/17; chromosome CDS3792945 561 - 0.417112
NA plu1873 SubName: Full=Complete genome; segment 7/17; chromosome CDS2216710 1164 + 0.388316
NA plu4430 SubName: Full=Complete genome; segment 15/17; chromosome CDS5180019 1563 - 0.557901
NA plu0449 SubName: Full=Complete genome; segment 2/17; chromosome CDS477801 627 + 0.307815
NA plu2825 SubName: Full=Complete genome; segment 10/17; chromosome CDS3356425 357 - 0.408964
NA plu1177 RecName: Full=Non-canonical purine NTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase; chromosome CDS1361883 594 - 0.464646
NA plu0447 SubName: Full=Complete genome; segment 2/17; chromosome CDS475503 657 + 0.342466
NA plu4077 SubName: Full=Complete genome; segment 14/17; chromosome CDS4763730 882 - 0.442177
NA plu0168 SubName: Full=Complete genome; segment 1/17; chromosome CDS178770 1200 + 0.350833
NA plu3395 SubName: Full=Complete genome; segment 12/17; chromosome CDS4018802 1488 - 0.456989
NA plu2773 SubName: Full=Complete genome; segment 10/17; chromosome CDS3286520 930 - 0.352688
NA plu0864 SubName: Full=Complete genome; segment 3/17; chromosome CDS992368 552 + 0.422101
NA plu2198 SubName: Full=Complete genome; segment 8/17; chromosome CDS2585118 1263 + 0.443389
NA plu3917 SubName: Full=Complete genome; segment 14/17; chromosome CDS4595288 870 - 0.457471
NA plu0519 SubName: Full=Complete genome; segment 2/17; chromosome CDS574466 1278 + 0.462441
NA plu2819 SubName: Full=Complete genome; segment 10/17; chromosome CDS3348696 588 + 0.355442
NA plu0794 RecName: Full=Adenylosuccinate synthetase 1; Short=AMPSase 1; Short=AdSS 1; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase 1; chromosome CDS913550 1260 - 0.384127
NA plu0936 SubName: Full=Complete genome; segment 4/17; chromosome CDS1077684 537 + 0.310987
NA plu2180 SubName: Full=Complete genome; segment 8/17; chromosome CDS2565977 657 + 0.34551
NA plu1665 SubName: Full=Complete genome; segment 6/17; chromosome CDS1988466 1434 - 0.469317
NA plu3320 RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS3939979 522 - 0.448276
NA plu2772 SubName: Full=Complete genome; segment 10/17; chromosome CDS3285487 1008 - 0.323413
add plu2362 adenosine deaminase (adenosine aminohydrolase)RecName: Full=Adenosine deaminase; EC=3.5.4.4; AltName: Full=Adenosine aminohydrolase; chromosome CDS2781919 1002 + 0.436128
adk plu3836 adenylate kinase (ATP-AMP transphosphorylase)RecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; chromosome CDS4507364 645 - 0.432558
apt plu3842 adenine phosphoribosyltransferase (APRT)RecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; chromosome CDS4516141 552 - 0.436594
carA plu0603 carbamoyl-phosphate synthase (glutamine-hydrolyzing)RecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; chromosome CDS684096 1164 + 0.457045
carB plu0604 carbamoylphosphate synthetase large subunitRecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; chromosome CDS685275 3225 + 0.473798
cdd plu1547 Cytidine deaminase (Cytidine aminohydrolase) (CDA)RecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA; chromosome CDS1851118 885 - 0.453107
cpdB plu3927 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursorSubName: Full=2,3-cyclic-nucleotide 2-phosphodiesterase; chromosome CDS4605757 1956 - 0.425869
cyaA plu4643 Adenylate cyclase (ATP pyrophosphate-lyase) (adenylyl cyclase)RecName: Full=Adenylate cyclase; EC=4.6.1.1; chromosome CDS5410238 2571 - 0.420459
dcd plu1557 deoxycytidine triphosphate deaminaseRecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; chromosome CDS1859776 582 + 0.491409
deoC plu0520 2-deoxyribose-5-phosphate aldolase (phosphodeoxyriboaldolase)RecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; chromosome CDS576070 780 + 0.466667
deoD plu0522 purine-nucleoside phosphorylase (inosine phosphorylase) (PNP)RecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; chromosome CDS578355 717 + 0.449093
dgt plu0907 Deoxyguanosinetriphosphate triphosphohydrolase (dGTPase)SubName: Full=Deoxyguanosinetriphosphate triphosphohydrolase (DGTPase); chromosome CDS1041652 1527 + 0.40406
dut plu4867 deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase)RecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; chromosome CDS5641325 459 + 0.492375
gmk plu0274 guanylate kinase (GMP kinase)RecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; chromosome CDS290958 624 - 0.456731
gppA plu4666 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase (guanosine pentaphosphate phosphohydrolase) (pppGpp-5'-phosphohydrolase)RecName: Full=Guanosine-5-triphosphate,3-diphosphate pyrophosphatase; EC=3.6.1.40; AltName: Full=Guanosine pentaphosphate phosphohydrolase; AltName: Full=pppGpp-5-phosphohydrolase; chromosome CDS5439582 1503 + 0.45509
gpt plu1241 xanthine-guanine phosphoribosyltransferase (XGPRT)RecName: Full=Xanthine phosphoribosyltransferase; EC=2.4.2.22; AltName: Full=Xanthine-guanine phosphoribosyltransferase; Short=XGPRT; chromosome CDS1435168 462 + 0.445887
guaA plu2712 GMP synthetase [glutamine-hydrolyzing] (glutamine amidotransferase) (GMP synthetase)RecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; chromosome CDS3213917 1578 - 0.459442
iunH plu4289 inosine-uridine preferring nucleoside hydrolase (IU-nucleoside hydrolase) (purine nucleosidase)SubName: Full=Inosine-uridine preferring nucleoside hydrolase (IU-nucleoside hydrolase) (Purine nucleosidase); chromosome CDS5015720 951 + 0.48265
miaE plu0721 tRNA-(MS[2]IO[6]A)-hydroxylaseSubName: Full=tRNA-(MS[2]IO[6]A)-hydroxylase; chromosome CDS830155 762 - 0.400262
mssA plu1621 cytidylate kinase (CK) (cytidine monophosphate kinase) (CMP kinase) (MssA protein) (P25)RecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; chromosome CDS1937140 684 + 0.501462
mtnA plu0906 MTA/SAH nucleosidase [Includes: 5'-methylthioadenosine nucleosidase ; S-adenosylhomocysteine nucleosidase ]RecName: Full=5-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Short=MTA/SAH nucleosidase; Short=MTAN; EC=3.2.2.9; AltName: Full=5-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase; chromosome CDS1040823 702 - 0.467236
ndk plu1372 nucleoside-diphosphate kinaseRecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; chromosome CDS1651658 426 + 0.467136
nrdA plu3052 ribonucleoside-diphosphate reductase 1 alpha chain (ribonucleotide reductase 1) (B1 protein) (R1 protein)RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS3556573 2292 + 0.466841
nrdB plu3053 ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotide reductase 1) (B2 protein) (R2 protein)SubName: Full=Ribonucleoside-diphosphate reductase 1 beta chain (Ribonucleotide reductase 1) (B2 protein) (R2 protein); chromosome CDS3558877 1131 + 0.454465
nrdD plu4499 Anaerobic ribonucleoside-triphosphate reductaseSubName: Full=Anaerobic ribonucleoside-triphosphate reductase; chromosome CDS5256188 2139 + 0.437588
nrdE plu1285 ribonucleoside-diphosphate reductase alpha-chain (ribonucleotide reductase R1 subunit)RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS1495375 2130 - 0.383568
nrdF plu1284 ribonucleoside-diphosphate reductase 2 beta chain (ribonucleotide reductase 2) (R2f protein)RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; chromosome CDS1494395 960 - 0.3375
nrdI plu1286 NrdI proteinRecName: Full=Protein NrdI; chromosome CDS1497507 423 - 0.444444
nupC plu1399 nucleoside permease NupCSubName: Full=Nucleoside permease NupC; chromosome CDS1680066 1185 + 0.412658
ppx plu2764 exopolyphosphatase (exopolypase) (metaphosphatase)SubName: Full=Exopolyphosphatase (Exopolypase) (Metaphosphatase); chromosome CDS3275073 1533 + 0.439661
prsA plu2066 Ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase)RecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; Short=P-Rib-PP synthase; Short=PRPP synthase; chromosome CDS2447981 948 - 0.489451
purA plu4577 adenylosuccinate synthetase (IMP--aspartate ligase) (ADSS) (AMPSASE)RecName: Full=Adenylosuccinate synthetase 2; Short=AMPSase 2; Short=AdSS 2; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase 2; chromosome CDS5341933 1299 - 0.467283
purB plu2806 adenylosuccinate lyaseSubName: Full=Adenylosuccinate lyase; chromosome CDS3330867 1371 + 0.43326
purC plu2744 phosphoribosylaminoimidazole-succinocarboxamides ynthase(5'-phosphoribosyl-5-aminoimidazole-4-N-succinocarb oxamidesynthase)RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; chromosome CDS3255746 714 - 0.421569
purD plu0494 phosphoribosylglycinamide synthetaseRecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; chromosome CDS532626 1284 - 0.449377
purE plu3807 phosphoribosylaminoimidazole carboxylase catalytic subunit (AIR carboxylase) (AIRC)RecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; chromosome CDS4473864 531 + 0.485876
purF plu3167 amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATASE)RecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; chromosome CDS3727092 1518 - 0.442688
purH plu0495 phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclohydrolase (bifunctional enzyme)RecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; chromosome CDS533931 1590 - 0.454088
purK plu3808 phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR carboxylase) (AIRC)SubName: Full=Phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR carboxylase) (AIRC); chromosome CDS4474391 1098 + 0.456284
purL plu3317 Phosphoribosylformylglycineamide synthetase (formylglycineamide ribonucleotide synthetase)RecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; chromosome CDS3931984 3897 - 0.480626
purM plu2760 phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (phosphoribosyl-aminoimidazole synthetase) (AIR synthase)RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; chromosome CDS3270573 1041 + 0.48511
purN plu2761 phosphoribosylglycinamide formyltransferase 1 (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase)SubName: Full=Phosphoribosylglycinamide formyltransferase 1 (GART) (GAR transformylase) (5-phosphoribosylglycinamide transformylase); chromosome CDS3271610 639 + 0.455399
purU plu2504 Formyltetrahydrofolate deformylase (Formyl-FH(4) hydrolase)SubName: Full=Formyltetrahydrofolate deformylase (Formyl-FH(4) hydrolase); chromosome CDS2948275 849 + 0.409894
pyrB plu4492 aspartate carbamoyltransferase catalytic chain (aspartate transcarbamylase) (ATCase)RecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; chromosome CDS5247435 924 + 0.452381
pyrC plu1819 dihydroorotase (DHOase)RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS2165893 1053 - 0.445394
pyrD plu1758 dihydroorotate dehydrogenase (dihydroorotate oxidase) (dhodehase) (dhodase) (dhod)RecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; chromosome CDS2097719 1011 + 0.413452
pyrE plu4869 orotate phosphoribosyltransferase (OPRT) (OPRTASE)RecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; chromosome CDS5642683 642 - 0.429907
pyrF plu2427 Orotidine-5'-phosphate decarboxylase (OMP decarboxylase)RecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; chromosome CDS2849213 747 - 0.47925
pyrG plu0912 CTP synthetaseRecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; chromosome CDS1050232 1638 + 0.470085
pyrH plu0674 uridine 5'-monophosphate (UMP) kinaseRecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; chromosome CDS774238 729 + 0.477366
pyrI plu4497 Aspartate carbamoyltransferase regulatory chainRecName: Full=Aspartate carbamoyltransferase regulatory chain; chromosome CDS5254869 465 + 0.423656
tdk plu2497 Thymidine kinaseRecName: Full=Thymidine kinase; EC=2.7.1.21; chromosome CDS2940838 606 - 0.39769
thyA plu0623 Thymidylate synthase (TS) (TSase)RecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; chromosome CDS709644 795 + 0.450314
tmk plu2828 thymidylate kinaseRecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; chromosome CDS3358652 639 - 0.431925
udk plu1556 uridine kinase (uridine monophosphokinase) (pyrimidine ribonucleoside kinase)RecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; chromosome CDS1859081 642 + 0.409657
udp plu4417 uridine phosphorylase (UDRPase)RecName: Full=Uridine phosphorylase; EC=2.4.2.3; chromosome CDS5165208 756 - 0.465608
upp plu2759 Uracil phosphoribosyltransferase (UMP pyrophosphorylase)RecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; chromosome CDS3269720 627 - 0.448166
ushA plu3828 Protein UshA precursor [Includes: UDP-sugar hydrolase (UDP-sugar diphosphatase) (UDP-sugar pyrophosphatase); 5'-nucleotidase (5'-NT)]SubName: Full=Protein UshA; chromosome CDS4496126 1659 - 0.422544