Gene list
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COG category: Nucleotide transport and metabolism
Organism: Vibrio parahaemolyticus RIMD 2210633, O3:K6
Number of genes found: 90
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| Vibrio parahaemolyticus RIMD 2210633, O3:K6 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| VP0066 | xanthosine phosphorylase | RecName: Full=Purine nucleoside phosphorylase; EC=2.4.2.1; AltName: Full=Inosine-guanosine phosphorylase; | chromosome 1 | CDS | 74536 | 858 | - | 0.504662 | |
| VP0116 | adenosine deaminase | RecName: Full=Adenosine deaminase; EC=3.5.4.4; AltName: Full=Adenosine aminohydrolase; | chromosome 1 | CDS | 122259 | 1005 | - | 0.491542 | |
| VP0156 | xanthine/uracil permease family protein | SubName: Full=Xanthine/uracil permease family protein; | chromosome 1 | CDS | 166911 | 1413 | - | 0.491154 | |
| VP0161 | guanylate kinase | RecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; | chromosome 1 | CDS | 174090 | 624 | - | 0.440705 | |
| VP0178 | orotate phosphoribosyltransferase | RecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; | chromosome 1 | CDS | 191665 | 642 | + | 0.482866 | |
| VP0232 | putative carbamoylphosphate synthase large subunit, short form | SubName: Full=Putative carbamoylphosphate synthase large subunit, short form; | chromosome 1 | CDS | 244604 | 966 | + | 0.400621 | |
| VP0290 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | SubName: Full=2,3-cyclic-nucleotide 2-phosphodiesterase; | chromosome 1 | CDS | 286106 | 1956 | - | 0.46728 | |
| VP0470 | carbamoyl-phosphate synthase, small subunit | RecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; | chromosome 1 | CDS | 474811 | 1140 | + | 0.47807 | |
| VP0471 | carbamoyl-phosphate synthase, large subunit | RecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; | chromosome 1 | CDS | 475967 | 3234 | + | 0.479283 | |
| VP0479 | MTA/SAH nucleosidase | RecName: Full=5-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Short=MTA/SAH nucleosidase; Short=MTAN; EC=3.2.2.9; AltName: Full=5-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase; | chromosome 1 | CDS | 485380 | 696 | - | 0.445402 | |
| VP0524 | thymidylate synthase | RecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; | chromosome 1 | CDS | 540798 | 852 | + | 0.455399 | |
| VP0572 | exopolyphosphatase | SubName: Full=Exopolyphosphatase; | chromosome 1 | CDS | 595216 | 1506 | - | 0.47344 | |
| VP0604 | nucleoside diphosphate kinase | RecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; | chromosome 1 | CDS | 629017 | 426 | + | 0.464789 | |
| VP0617 | GMP synthase | RecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; | chromosome 1 | CDS | 642937 | 1554 | + | 0.466538 | |
| VP0663 | YfhC protein | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome 1 | CDS | 692635 | 486 | + | 0.485597 | |
| VP0666 | phosphoribosylformylglycinamidine synthase | RecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; | chromosome 1 | CDS | 695498 | 3909 | + | 0.490918 | |
| VP0673 | xanthine-guanine phosphoribosyltransferase | RecName: Full=Xanthine phosphoribosyltransferase; EC=2.4.2.22; AltName: Full=Xanthine-guanine phosphoribosyltransferase; Short=XGPRT; | chromosome 1 | CDS | 706791 | 465 | + | 0.458065 | |
| VP0696 | minor nuclease C1B isoform precursor | SubName: Full=Minor nuclease C1B isoform; | chromosome 1 | CDS | 728464 | 753 | - | 0.468792 | |
| VP0702 | Syd protein | RecName: Full=Protein Syd; | chromosome 1 | CDS | 736980 | 546 | + | 0.457875 | |
| VP0739 | ribose-phosphate pyrophosphokinase | RecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; Short=P-Rib-PP synthase; Short=PRPP synthase; | chromosome 1 | CDS | 776646 | 945 | - | 0.467725 | |
| VP0748 | 5'-nucleotidase precursor | RecName: Full=5-nucleotidase; EC=3.1.3.5; Flags: Precursor; | chromosome 1 | CDS | 784866 | 1683 | + | 0.45514 | |
| VP0822 | adenylate kinase | RecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; | chromosome 1 | CDS | 851266 | 645 | + | 0.448062 | |
| VP0860 | histidine triad family protein | SubName: Full=Histidine triad family protein; | chromosome 1 | CDS | 893838 | 447 | - | 0.458613 | |
| VP0864 | formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate deformylase; | chromosome 1 | CDS | 897019 | 834 | - | 0.438849 | |
| VP0878 | NupC family protein | SubName: Full=NupC family protein; | chromosome 1 | CDS | 910217 | 1200 | + | 0.46 | |
| VP0925 | deoxyguanosinetriphosphate triphosphohydrolase | RecName: Full=Deoxyguanosinetriphosphate triphosphohydrolase-like protein; | chromosome 1 | CDS | 961908 | 1323 | - | 0.470144 | |
| VP0960 | uridine phosphorylase | RecName: Full=Uridine phosphorylase; EC=2.4.2.3; | chromosome 1 | CDS | 1002472 | 759 | + | 0.469038 | |
| VP0964 | Hit family protein | SubName: Full=Hit family protein; | chromosome 1 | CDS | 1006963 | 351 | + | 0.45584 | |
| VP1002 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 1047439 | 2721 | + | 0.458287 | |
| VP1099 | tRNA-(MS[2]IO[6]A)-hydroxylase | SubName: Full=tRNA-(MS[2]IO[6]A)-hydroxylase; | chromosome 1 | CDS | 1156396 | 771 | - | 0.439689 | |
| VP1128 | adenylosuccinate lyase | SubName: Full=Adenylosuccinate lyase; | chromosome 1 | CDS | 1184447 | 1371 | - | 0.469001 | |
| VP1151 | thymidine kinase | RecName: Full=Thymidine kinase; EC=2.7.1.21; | chromosome 1 | CDS | 1208873 | 579 | + | 0.454231 | |
| VP1207 | UDP-sugar hydrolase | SubName: Full=UDP-sugar hydrolase; | chromosome 1 | CDS | 1267185 | 1695 | - | 0.440708 | |
| VP1261 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 1335073 | 378 | + | 0.425926 | |
| VP1263 | putative phosphoribosylaminoimidazole-succinocarboxamide synthase | RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; | chromosome 1 | CDS | 1337584 | 1104 | - | 0.435688 | |
| VP1297 | phosphoribosylglycinamide formyltransferase 2 | RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; | chromosome 1 | CDS | 1376818 | 1176 | - | 0.468537 | |
| VP1298 | cytidine deaminase | RecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA; | chromosome 1 | CDS | 1378141 | 888 | - | 0.46509 | |
| VP1561 | bacteriophage f237 ORF8 | SubName: Full=Bacteriophage f237 ORF8; | chromosome 1 | CDS | 1665561 | 1494 | + | 0.369478 | |
| VP1601 | dihydroorotate dehydrogenase | RecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; | chromosome 1 | CDS | 1691830 | 1011 | - | 0.443126 | |
| VP1760 | putative adenylate cyclase | SubName: Full=Putative adenylate cyclase; | chromosome 1 | CDS | 1876206 | 546 | - | 0.443223 | |
| VP1816 | putative Hit protein involved in cell-cycle regulation | SubName: Full=Putative Hit protein involved in cell-cycle regulation; | chromosome 1 | CDS | 1920735 | 417 | - | 0.388489 | |
| VP1912 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 1997772 | 390 | - | 0.438462 | |
| VP1934 | ribonucleoside-diphosphate reductase, alpha subunit | RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; | chromosome 1 | CDS | 2021077 | 2283 | + | 0.465177 | |
| VP1935 | ribonucleoside-diphosphate reductase, beta subunit | SubName: Full=Ribonucleoside-diphosphate reductase, beta subunit; | chromosome 1 | CDS | 2023441 | 1134 | + | 0.443563 | |
| VP2026 | orotidine 5'-phosphate decarboxylase | RecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; | chromosome 1 | CDS | 2124152 | 702 | - | 0.451567 | |
| VP2031 | cytidylate kinase | RecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; | chromosome 1 | CDS | 2128950 | 681 | - | 0.487518 | |
| VP2049 | thymidylate kinase | RecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; | chromosome 1 | CDS | 2150113 | 633 | - | 0.480253 | |
| VP2067 | uridine kinase | RecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; | chromosome 1 | CDS | 2169970 | 642 | - | 0.46729 | |
| VP2180 | adenine phosphoribosyltransferase | RecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; | chromosome 1 | CDS | 2290620 | 546 | - | 0.452381 | |
| VP2185 | amidophosphoribosyltransferase | RecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; | chromosome 1 | CDS | 2294451 | 1515 | - | 0.473267 | |
| VP2283 | uracil permease | SubName: Full=Uracil permease; | chromosome 1 | CDS | 2391242 | 1254 | + | 0.49362 | |
| VP2284 | uracil phosphoribosyltransferase | RecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; | chromosome 1 | CDS | 2392600 | 627 | - | 0.437002 | |
| VP2285 | phosphoribosylformylglycinamidine cyclo-ligase | RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; | chromosome 1 | CDS | 2393407 | 1041 | + | 0.477426 | |
| VP2286 | phosphoribosylglycinamide formyltransferase | SubName: Full=Phosphoribosylglycinamide formyltransferase; | chromosome 1 | CDS | 2394577 | 648 | + | 0.462963 | |
| VP2316 | uridylate kinase | RecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; | chromosome 1 | CDS | 2428330 | 732 | - | 0.474044 | |
| VP2430 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 2549778 | 2349 | + | 0.458919 | |
| VP2433 | purine nucleoside phosphorylase | RecName: Full=Purine nucleoside phosphorylase DeoD-type 1; Short=PNP 1; EC=2.4.2.1; | chromosome 1 | CDS | 2553935 | 720 | - | 0.463889 | |
| VP2435 | thymidine phosphorylase | RecName: Full=Thymidine phosphorylase; EC=2.4.2.4; AltName: Full=TdRPase; | chromosome 1 | CDS | 2556083 | 1329 | - | 0.492099 | |
| VP2436 | deoxyribose-phosphate aldolase | RecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; | chromosome 1 | CDS | 2557509 | 777 | - | 0.455598 | |
| VP2437 | NupC family protein | SubName: Full=NupC family protein; | chromosome 1 | CDS | 2558867 | 1284 | - | 0.468847 | |
| VP2515 | hypoxanthine ribosyl transferase | SubName: Full=Hypoxanthine ribosyl transferase; | chromosome 1 | CDS | 2652366 | 531 | - | 0.421846 | |
| VP2562 | CTP synthase | RecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; | chromosome 1 | CDS | 2705768 | 1641 | - | 0.466789 | |
| VP2621 | Ham1 protein | RecName: Full=Non-canonical purine NTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase; | chromosome 1 | CDS | 2762552 | 603 | + | 0.482587 | |
| VP2654 | aspartate carbamoyltransferase, catalytic subunit | RecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; | chromosome 1 | CDS | 2807192 | 930 | + | 0.48172 | |
| VP2655 | aspartate carbamoyltransferase, regulatory subunit | RecName: Full=Aspartate carbamoyltransferase regulatory chain; | chromosome 1 | CDS | 2808137 | 462 | + | 0.417749 | |
| VP2728 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 2894681 | 141 | - | 0.468085 | |
| VP2812 | adenylosuccinate synthetase | RecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; | chromosome 1 | CDS | 2975587 | 1317 | - | 0.458618 | |
| VP2896 | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | RecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; | chromosome 1 | CDS | 3080614 | 1593 | + | 0.500942 | |
| VP2898 | phosphoribosylamine-glycine ligase | RecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; | chromosome 1 | CDS | 3082360 | 1290 | + | 0.504651 | |
| VP2987 | adenylate cyclase | SubName: Full=Adenylate cyclase; | chromosome 1 | CDS | 3185161 | 2529 | - | 0.478845 | |
| VP3003 | guanosine-5'-triphosphate,3'-diphosphatepyrophos phatase | RecName: Full=Guanosine-5-triphosphate,3-diphosphate pyrophosphatase; EC=3.6.1.40; AltName: Full=Guanosine pentaphosphate phosphohydrolase; AltName: Full=pppGpp-5-phosphohydrolase; | chromosome 1 | CDS | 3206155 | 1494 | + | 0.487282 | |
| VP3036 | phosphoribosylaminoimidazole carboxylase, catalytic subunit | RecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; AltName: Full=5-(carboxyamino)imidazole ribonucleotide mutase; | chromosome 1 | CDS | 3243729 | 486 | + | 0.512346 | |
| VP3037 | phosphoribosylaminoimidazole carboxylase, ATPase subunit | RecName: Full=N5-carboxyaminoimidazole ribonucleotide synthase; Short=N5-CAIR synthase; EC=6.3.4.18; AltName: Full=5-(carboxyamino)imidazole ribonucleotide synthetase; | chromosome 1 | CDS | 3244219 | 1134 | + | 0.504409 | |
| VPA0195 | NupC family protein | SubName: Full=NupC family protein; | chromosome 2 | CDS | 193626 | 1209 | + | 0.468156 | |
| VPA0295 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 2 | CDS | 294404 | 1566 | - | 0.480204 | |
| VPA0308 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 2 | CDS | 307784 | 726 | - | 0.490358 | |
| VPA0375 | putative adenylosuccinate synthase | RecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; | chromosome 2 | CDS | 372186 | 1257 | - | 0.487669 | |
| VPA0408 | dihydroorotase | RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; | chromosome 2 | CDS | 403875 | 1029 | - | 0.487852 | |
| VPA0834 | formate-tetrahydrofolate ligase | RecName: Full=Formate--tetrahydrofolate ligase; EC=6.3.4.3; AltName: Full=Formyltetrahydrofolate synthetase; Short=FHS; Short=FTHFS; | chromosome 2 | CDS | 870481 | 1749 | - | 0.460263 | |
| VPA0855 | putative 5'-nucleotidase | SubName: Full=Putative 5-nucleotidase; | chromosome 2 | CDS | 891297 | 1743 | + | 0.449225 | |
| VPA0941 | anaerobic ribonucleoside-triphosphate reductase | SubName: Full=Anaerobic ribonucleoside-triphosphate reductase; | chromosome 2 | CDS | 972685 | 2121 | - | 0.461103 | |
| VPA1020 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 2 | CDS | 1072830 | 525 | - | 0.422857 | |
| VPA1079 | uridine phosphorylase | SubName: Full=Uridine phosphorylase; | chromosome 2 | CDS | 1139090 | 732 | - | 0.472678 | |
| VPA1089 | putative 5'-methylthioadenosine/S-adenosylhomocysteine nuclosidase | SubName: Full=Putative 5-methylthioadenosine/S-adenosylhomocysteine nuclosidase; | chromosome 2 | CDS | 1150171 | 759 | - | 0.444005 | |
| VPA1159 | GMP reductase | RecName: Full=GMP reductase; EC=1.7.1.7; AltName: Full=Guanosine 5-monophosphate oxidoreductase; Short=Guanosine monophosphate reductase; | chromosome 2 | CDS | 1224168 | 1047 | - | 0.481375 | |
| VPA1192 | putative deoxycytidylate deaminase | SubName: Full=Putative deoxycytidylate deaminase; | chromosome 2 | CDS | 1264867 | 465 | + | 0.464516 | |
| VPA1242 | cytosine permease/transport | SubName: Full=Cytosine permease/transport; | chromosome 2 | CDS | 1316197 | 1239 | + | 0.486683 | |
| VPA1243 | putative cytosine deaminase | SubName: Full=Putative cytosine deaminase; | chromosome 2 | CDS | 1317445 | 1278 | + | 0.468701 | |
| VPA1292 | adenosine deaminase | RecName: Full=Adenine deaminase; Short=ADE; EC=3.5.4.2; AltName: Full=Adenine aminohydrolase; Short=AAH; | chromosome 2 | CDS | 1369910 | 1014 | + | 0.446746 | |
| VPA1475 | purine nucleoside phosphorylase | RecName: Full=Purine nucleoside phosphorylase DeoD-type 2; Short=PNP 2; EC=2.4.2.1; | chromosome 2 | CDS | 1574192 | 711 | + | 0.468354 | |
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