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2024-05-16 06:02:53

Gene list

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COG category: Amino acid transport and metabolism
Genomic element: megaplasmid

Number of genes found: 76

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPOA0435 pyridoxal-phosphate dependent enzymemegaplasmid CDS482759 975 - 0.688205
NA SPOA0148 membrane protein, major facilitator transporter familymegaplasmid CDS159056 1158 - 0.684801
NA SPOA0298 branched-chain amino acid ABC transporter, permease proteinmegaplasmid CDS326663 981 - 0.573904
NA SPOA0097 branched-chain amino acid ABC transporter, permease proteinmegaplasmid CDS97765 939 - 0.644302
NA SPOA0231 glycine betaine/proline ABC transporter, periplasmic substrate-binding proteinmegaplasmid CDS252309 942 + 0.602972
NA SPOA0199 transcriptional regulator, GntR familymegaplasmid CDS210138 1479 - 0.623394
NA SPOA0381 spermidine/putrescine ABC transporter, periplasmic substrate-binding proteinmegaplasmid CDS428256 1041 + 0.620557
NA SPOA0064 NG,NG-dimethylarginine dimethylaminohydrolase, putativemegaplasmid CDS63234 783 - 0.65645
NA SPOA0266 proline racemase, putativemegaplasmid CDS292150 942 - 0.621019
NA SPOA0321 glyoxalase family proteinmegaplasmid CDS360699 462 - 0.666667
NA SPOA0101 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein, putativemegaplasmid CDS100984 1281 - 0.627635
NA SPOA0291 branched-chain amino acid aminotransferase, putativemegaplasmid CDS320935 960 - 0.648958
NA SPOA0146 threonine aldolase, low-specificitymegaplasmid CDS156768 1164 + 0.610825
NA SPOA0299 branched-chain amino acid ABC transporter, permease proteinmegaplasmid CDS327648 870 - 0.570115
NA SPOA0158 ACC deaminase/D-cysteine desulfhydrase familymegaplasmid CDS173964 1020 - 0.640196
NA SPOA0375 transcriptional regulator, gntR familymegaplasmid CDS419547 1464 + 0.607924
NA SPOA0100 branched-chain amino acid ABC transporter, ATP-binding proteinmegaplasmid CDS100267 714 - 0.648459
NA SPOA0108 membrane protein, putativemegaplasmid CDS108335 1215 + 0.606584
NA SPOA0385 conserved hypothetical proteinmegaplasmid CDS432275 1293 + 0.702243
NA SPOA0366 amino acid permeasemegaplasmid CDS409666 1347 + 0.636229
NA SPOA0068 polar amino acid uptake family ABC transporter, ATP-binding proteinmegaplasmid CDS67577 801 + 0.635456
NA SPOA0020 alanine racemase domain proteinmegaplasmid CDS16728 1173 - 0.658994
NA SPOA0332 dihydroxy-acid dehydratase, putativemegaplasmid CDS372441 1797 - 0.599889
NA SPOA0431 tetracycline resistance proteinmegaplasmid CDS478537 1200 - 0.655
NA SPOA0409 tryptophan 2,3-dioxygenase, putativemegaplasmid CDS455624 837 + 0.615293
NA SPOA0098 branched-chain amino acid ABC transporter, permease proteinmegaplasmid CDS98700 870 - 0.621839
NA SPOA0300 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding proteinmegaplasmid CDS328607 1188 - 0.575758
NA SPOA0244 dihydrodipicolinate synthase family proteinmegaplasmid CDS268432 915 - 0.617486
NA SPOA0429 peptidase, M20/M25/M40 familymegaplasmid CDS475904 1446 + 0.643845
NA SPOA0164 transcriptional regulator, GntR familymegaplasmid CDS180424 1386 + 0.608947
NA SPOA0262 oxidoreductase, FAD-bindingmegaplasmid CDS287856 1242 - 0.632045
NA SPOA0416 conserved hypothetical proteinmegaplasmid CDS463118 741 - 0.676113
NA SPOA0063 FAD dependent oxidoreductase/aminomethyl transferasemegaplasmid CDS60657 2436 - 0.642447
NA SPOA0069 polar amino acid uptake family ABC transporter, periplasmic substrate-binding proteinmegaplasmid CDS68410 771 + 0.635538
NA SPOA0283 oxidoreductase, GMC familymegaplasmid CDS311439 1605 - 0.692212
NA SPOA0379 transcriptional regulator, GntR familymegaplasmid CDS425152 1473 + 0.67685
NA SPOA0310 aminomethyl transferase family proteinmegaplasmid CDS341657 2412 - 0.589967
NA SPOA0149 transcriptional regulator, GntR familymegaplasmid CDS160318 1317 + 0.668185
NA SPOA0210 integral membrane proteinmegaplasmid CDS231416 840 - 0.671429
NA SPOA0066 aspartate aminotransferase, putativemegaplasmid CDS65624 1188 - 0.679293
NA SPOA0339 HAD-superfamily hydrolase, subfamily IBmegaplasmid CDS383108 672 - 0.577381
NA SPOA0380 conserved hypothetical proteinmegaplasmid CDS426750 1308 + 0.663609
NA SPOA0099 branched-chain amino acid ABC transporter, ATP-binding proteinmegaplasmid CDS99566 705 - 0.632624
NA SPOA0354 aminotransferase, class IIImegaplasmid CDS395648 1299 + 0.656659
NA SPOA0071 polar amino acid uptake family ABC transporter, permease proteinmegaplasmid CDS69939 789 + 0.656527
NA SPOA0144 serine--glyoxylate transaminase, putativemegaplasmid CDS154606 1191 + 0.657431
NA SPOA0309 sulphoacetaldehyde acetyltransferase, putativemegaplasmid CDS339974 1680 - 0.628571
NA SPOA0147 ornithine cyclodeaminase/mu-crystallin family proteinmegaplasmid CDS158076 879 + 0.639363
NA SPOA0234 agmatinase, putativemegaplasmid CDS256041 999 + 0.625626
NA SPOA0145 pyridoxal-phosphate dependent enzymemegaplasmid CDS155809 954 + 0.621593
NA SPOA0382 spermidine/putrescine ABC transporter, ATP-binding proteinmegaplasmid CDS429358 1104 + 0.65942
NA SPOA0267 dihydroxydipicolinate synthase family proteinmegaplasmid CDS293082 957 - 0.599791
NA SPOA0383 spermidine/putrescine ABC transporter, permease proteinmegaplasmid CDS430463 885 + 0.610169
NA SPOA0233 glycine betaine/proline ABC transporter, permease protein, putativemegaplasmid CDS254412 1575 + 0.629206
NA SPOA0295 hydantoin racemasemegaplasmid CDS324468 684 - 0.589181
NA SPOA0070 polar amino acid uptake family ABC transporter, permease proteinmegaplasmid CDS69190 753 + 0.653386
NA SPOA0418 acetolactate synthase, large subunit, putativemegaplasmid CDS464662 1692 + 0.663712
NA SPOA0386 oxidoreductase, GMC familymegaplasmid CDS433575 1626 + 0.662362
NA SPOA0349 membrane protein, putativemegaplasmid CDS391276 960 - 0.678125
NA SPOA0384 spermidine/putrescine ABC transporter, permease proteinmegaplasmid CDS431347 828 + 0.612319
NA SPOA0311 FAD dependent oxidoreductase/aminomethyl transferasemegaplasmid CDS344068 2400 - 0.622083
NA SPOA0065 thiamine pyrophosphate-dependent enzymemegaplasmid CDS64023 1602 - 0.701623
NA SPOA0209 oxidoreductase, FAD-bindingmegaplasmid CDS230029 1302 - 0.64977
NA SPOA0168 oxidoreductase, FAD-bindingmegaplasmid CDS186254 1266 + 0.63981
aroA SPOA0015 3-phosphoshikimate 1-carboxyvinyltransferasemegaplasmid CDS12930 1347 + 0.683742
gabT SPOA0274 4-aminobutyrate aminotransferasemegaplasmid CDS301297 1278 + 0.668232
gcvH-2 SPOA0058 glycine cleavage system H proteinmegaplasmid CDS53059 441 + 0.566893
gcvP SPOA0059 glycine dehydrogenasemegaplasmid CDS53556 2859 + 0.645331
gcvT SPOA0057 glycine cleavage system T proteinmegaplasmid CDS51916 1098 + 0.638434
hisD-2 SPOA0202 histidinol dehydrogenasemegaplasmid CDS214950 1302 + 0.683564
hpcD SPOA0320 5-carboxymethyl-2-hydroxymuconate delta isomerasemegaplasmid CDS360331 378 + 0.65873
livF-2 SPOA0296 branched-chain amino acid ABC transporter, ATP-binding proteinmegaplasmid CDS325158 723 - 0.586445
livG SPOA0297 branched-chain amino acid ABC transporter, ATP-binding proteinmegaplasmid CDS325884 783 - 0.553001
megL SPOA0318 methionine gamma-lyasemegaplasmid CDS356420 1203 + 0.655029
opuAA SPOA0232 glycine betaine/proline ABC transporter, ATP-binding proteinmegaplasmid CDS253363 1053 + 0.619183
speB-4 SPOA0235 agmatinasemegaplasmid CDS257036 987 + 0.643364