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2024-05-14 01:40:33

Gene list

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COG category: Amino acid transport and metabolism
Genomic element: chromosome I

Number of genes found: 248

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Vibrio vulnificus YJ016, YJ016
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VV0006 ABC-type polar amino acid transport system, ATPase componentchromosome I CDS4898 738 - 0.49187
VV0007 ABC-type amino acid transport system, permease componentchromosome I CDS5632 711 - 0.488045
VV0009 ABC-type amino acid transport system, periplasmic componentchromosome I CDS6385 753 - 0.471448
VV0018 valine-pyruva_e aminotransferasechromosome I CDS16651 1257 - 0.470963
VV0035 ketol-acid reductoisomerasechromosome I CDS39308 1485 + 0.464646
VV0044 Peptide ABC transporter, periplasmic peptide-binding proteinchromosome I CDS52677 1557 + 0.495183
VV0045 peptide ABC transporter, permease componentchromosome I CDS54385 978 + 0.48773
VV0046 peptide ABC transporter, permease componentchromosome I CDS55365 939 + 0.510117
VV0059 phosphogluconate dehydratasechromosome I CDS69385 1797 - 0.559265
VV0061 putative gluconate permeasechromosome I CDS71813 1416 + 0.514124
VV0067 Zn-dependent oligopeptidasechromosome I CDS78071 2109 + 0.523945
VV0073 madN proteinchromosome I CDS85662 891 - 0.508417
VV0086 diaminopimelate decarboxylasechromosome I CDS97173 1254 + 0.519139
VV0087 diaminopimelate epimerasechromosome I CDS98437 831 + 0.506619
VV0097 putative threonine efflux proteinchromosome I CDS109141 624 + 0.501603
VV0102 putative transporterchromosome I CDS113088 1221 + 0.510238
VV0149 hypothetical proteinchromosome I CDS158255 777 + 0.39897
VV0155 lactoylglutathione lyasechromosome I CDS162336 396 + 0.39899
VV0175 conserved hypothetical proteinchromosome I CDS185803 909 - 0.466447
VV0199 glutamine synthetasechromosome I CDS211124 1410 - 0.478723
VV0253 ABC-type oligopeptide transport system, periplasmic componentchromosome I CDS264329 1833 + 0.472995
VV0254 ABC-type oligopeptide transport system, ATPase componentchromosome I CDS266185 870 + 0.502299
VV0255 ABC-type oligopeptide transport system, ATPase componentchromosome I CDS266984 921 + 0.459283
VV0258 putative membrane proteinchromosome I CDS269057 1041 + 0.467819
VV0273 hypothetical proteinchromosome I CDS285564 1053 + 0.466287
VV0318 glutamine amidotransferasechromosome I CDS326780 645 + 0.362791
VV0319 imidazoleglycerol-phosphate synthasechromosome I CDS327408 819 + 0.39072
VV0355 glutamine amidotransferasechromosome I CDS364052 621 + 0.378422
VV0356 imidazoleglycerol-phosphate synthasechromosome I CDS364659 783 + 0.355045
VV0357 putatve zinc-binding dehydrogenasechromosome I CDS365485 2142 + 0.44211
VV0406 conserved hypothetical proteinchromosome I CDS400165 873 - 0.5189
VV0411 sulfate adenylate transferase, subunit 2chromosome I CDS405393 909 + 0.473047
VV0484 3-isopropylmalate dehydratase small subunitchromosome I CDS469094 624 - 0.474359
VV0485 3-isopropylmalate dehydratase large subunitchromosome I CDS469708 1401 - 0.503212
VV0486 3-isopropylmalate dehydrogenasechromosome I CDS471128 1092 - 0.5
VV0487 2-isopropylmalate synthasechromosome I CDS472306 1548 - 0.479974
VV0495 thiamine pyrophosphate-requiring enzymechromosome I CDS480810 1725 + 0.476522
VV0496 acetolactate synthase, small subunitchromosome I CDS482536 495 + 0.472727
VV0553 conserved hypothetical proteinchromosome I CDS537086 558 + 0.469534
VV0623 dihydrodipicolinate reductasechromosome I CDS610649 810 + 0.48642
VV0624 carbamoylphosphate synthase small subunitchromosome I CDS611941 1140 + 0.475439
VV0625 carbamoylphosphate synthase large subunitchromosome I CDS613097 3234 + 0.501546
VV0638 NADPH-dependent glutamate synthase, small subunitchromosome I CDS623391 1419 - 0.512333
VV0639 NADPH-dependent glutamate synthase, large subunitchromosome I CDS624822 4512 - 0.512411
VV0640 NADPH-dependent glutamate synthase, small subunitchromosome I CDS629715 1470 - 0.497279
VV0641 NADPH-dependent glutamate synthase, large subunitchromosome I CDS631184 4539 - 0.501873
VV0650 homoserine dehydrogenase, threonine-sensitivechromosome I CDS644996 2568 + 0.477414
VV0651 homoserine kinasechromosome I CDS647567 972 + 0.49177
VV0652 threonine synthasechromosome I CDS648535 1281 + 0.480874
VV0658 sodium/alanine symporterchromosome I CDS654097 1476 + 0.495257
VV0663 branched-chain amino acid permeasechromosome I CDS658889 1314 + 0.490107
VV0701 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthasechromosome I CDS699121 1245 + 0.451406
VV0702 prephenate dehydrogenasechromosome I CDS700385 1128 + 0.488475
VV0709 prephenate dehydratasechromosome I CDS707962 1179 - 0.47922
VV0755 aminotransferase NifS, class Vchromosome I CDS760666 1215 + 0.472428
VV0762 leucyl aminopeptidasechromosome I CDS765933 1299 + 0.492687
VV0779 sodium/alanine symporterchromosome I CDS786467 1542 - 0.496757
VV0781 D-amino acid dehydrogenase, small subunitchromosome I CDS788343 1311 - 0.501144
VV0852 aminoacyl-histidine dipeptidasechromosome I CDS856715 1473 - 0.486762
VV0858 glutamate 5-kinasechromosome I CDS863072 1191 + 0.483627
VV0859 gamma-glutamyl phosphate reductasechromosome I CDS864293 1251 + 0.494804
VV0893 histidinol phosphatasechromosome I CDS895162 684 + 0.467836
VV0898 serine hydroxymethyltransferasechromosome I CDS901221 1251 + 0.494804
VV0926 phosphoribosylpyrophosphate synthetasechromosome I CDS927453 945 - 0.488889
VV0979 cysteine synthase Achromosome I CDS977746 969 - 0.4613
VV0980 cysteine synthase Zchromosome I CDS978869 741 - 0.448043
VV0991 hypothetical proteinchromosome I CDS989916 735 + 0.488435
VV0993 putative nitrogen regulatory protein P-IIchromosome I CDS991425 357 + 0.467787
VV1005 dipeptide/tripeptide permeasechromosome I CDS1001794 1389 - 0.483801
VV1007 asparagine synthasechromosome I CDS1004077 1665 - 0.47988
VV1074 histidine ammonia-lyasechromosome I CDS1075399 1545 - 0.512621
VV1099 transglutaminase-like enzymechromosome I CDS1103357 1959 + 0.447167
VV1114 putative aspartate aminotransferasechromosome I CDS1121122 1215 - 0.481481
VV1133 cysteine synthasechromosome I CDS1140833 1086 - 0.495396
VV1151 L-asparaginase Ichromosome I CDS1162088 1014 - 0.478304
VV1171 aspartate-semialdehyde dehydrogenasechromosome I CDS1187011 1119 + 0.472744
VV1185 lactoylglutathione lyasechromosome I CDS1201115 417 - 0.450839
VV1203 ABC-type oligopeptide transport system, periplasmic componentchromosome I CDS1218034 1683 + 0.456922
VV1204 oligopeptide ABC transporter, permease proteinchromosome I CDS1219820 921 + 0.450597
VV1205 oligopeptide ABC transporter, permease proteinchromosome I CDS1220752 909 + 0.466447
VV1206 oligopeptide ABC transporter, ATP-binding proteinchromosome I CDS1221686 975 + 0.482051
VV1207 ABC-type oligopeptide transport system, ATPase componentchromosome I CDS1222639 1014 + 0.488166
VV1216 tryptophan synthase alpha chainchromosome I CDS1228879 807 - 0.490706
VV1217 tryptophan synthase beta chainchromosome I CDS1229685 1191 - 0.510495
VV1218 indole-3-glycerol phosphate synthasechromosome I CDS1230951 1431 - 0.49406
VV1219 anthranilate phosphoribosyltransferasechromosome I CDS1232387 1014 - 0.500986
VV1220 anthranilate synthase component IIchromosome I CDS1233404 579 - 0.495682
VV1221 anthranilate synthase component Ichromosome I CDS1233985 1566 - 0.497446
VV1236 diaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylasechromosome I CDS1250741 2925 + 0.480342
VV1237 saccharopine dehydrogenasechromosome I CDS1253681 1245 + 0.471486
VV1238 diaminopimelate decarboxylasechromosome I CDS1254991 1146 + 0.466841
VV1239 glycine cleavage system regulatory proteinchromosome I CDS1256197 534 - 0.445693
VV1278 4-amino-4-deoxychorismate lyasechromosome I CDS1298378 849 + 0.454653
VV1309 ABC-type dipeptide transport system, periplasmic componentchromosome I CDS1328913 1842 + 0.435396
VV1310 oligopeptide ABC transporter, ATP-binding proteinchromosome I CDS1330773 867 + 0.445213
VV1311 ABC-type oligopeptide transport system, ATPase componentchromosome I CDS1331642 831 + 0.401925
VV1313 hypothetical proteinchromosome I CDS1333602 4107 + 0.441928
VV1320 alanine dehydrogenasechromosome I CDS1346128 1125 - 0.466667
VV1350 ATP phosphoribosyltransferasechromosome I CDS1375839 897 + 0.451505
VV1351 histidinol dehydrogenasechromosome I CDS1376741 1296 + 0.482253
VV1352 histidinol-phosphate aminotransferasechromosome I CDS1378047 1041 + 0.465898
VV1353 imidazoleglycerol-phosphate dehydratasechromosome I CDS1379157 1074 + 0.468343
VV1354 glutamine amidotransferasechromosome I CDS1380257 615 + 0.474797
VV1355 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide isomerasechromosome I CDS1380884 738 + 0.495935
VV1356 imidazoleglycerol-phosphate synthasechromosome I CDS1381603 774 + 0.481912
VV1357 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolasechromosome I CDS1382373 636 + 0.495283
VV1390 ABC-type oligopeptide transport system, periplasmic componentchromosome I CDS1413245 1662 - 0.468712
VV1399 cystathionine beta-lyasechromosome I CDS1423692 1299 - 0.492687
VV1427 permeasechromosome I CDS1453389 1275 + 0.505882
VV1442 glutamate decarboxylasechromosome I CDS1475138 1746 - 0.456472
VV1451 phosphoserine aminotransferasechromosome I CDS1485785 1146 + 0.45288
VV1458 selenocysteine lyasechromosome I CDS1492942 1245 + 0.493976
VV1478 oligoendopeptidase Fchromosome I CDS1514318 1800 + 0.500556
VV1479 succinylglutamate desuccinylasechromosome I CDS1516360 1029 + 0.464529
VV1484 permeasechromosome I CDS1520720 1209 - 0.515302
VV1492 homoserine trans-succinylasechromosome I CDS1526144 942 - 0.487261
VV1494 di-and tripeptidasechromosome I CDS1527259 1257 - 0.486874
VV1495 putitive hemolysinchromosome I CDS1528776 1074 + 0.479516
VV1499 conserved hypothetical proteinchromosome I CDS1532749 816 + 0.46201
VV1554 ABC-type polar amino acid transport system, ATPase componentchromosome I CDS1599831 750 - 0.450667
VV1555 ABC-type amino acid transport system, permease componentchromosome I CDS1600604 1119 - 0.470063
VV1556 ABC-type amino acid transport system, permease componentchromosome I CDS1601703 1206 - 0.44942
VV1557 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome I CDS1602981 1128 - 0.468972
VV1563 predicted ornithine cyclodeaminasechromosome I CDS1609464 1140 + 0.485965
VV1566 conserved hypothetical proteinchromosome I CDS1611110 1293 + 0.501934
VV1570 hypothetical proteinchromosome I CDS1613987 588 + 0.457483
VV1586 5-carboxymethyl-2-hydroxymuconate isomerasechromosome I CDS1628616 393 + 0.478372
VV1592 Zn-dependent carboxypeptidasechromosome I CDS1634720 1509 - 0.478463
VV1593 putative threonine efflux proteinchromosome I CDS1636437 636 + 0.463836
VV1595 sodium/alanine symporterchromosome I CDS1637735 1377 - 0.474946
VV1637 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthasechromosome I CDS1683798 1053 - 0.48433
VV1650 aminopeptidase Nchromosome I CDS1699960 2610 + 0.456322
VV1652 NAD-specific glutamate dehydrogenasechromosome I CDS1703029 4857 + 0.460572
VV1685 ABC-type spermidine/putrescine transport system, ATPase componentchromosome I CDS1738472 1143 + 0.444444
VV1686 ABC-type spermidine/putrescine transport system, permease component Ichromosome I CDS1739598 858 + 0.448718
VV1687 ABC-type spermidine/putrescine transport system, permease component IIchromosome I CDS1740455 771 + 0.437095
VV1689 ABC-type spermidine/putrescine-binding periplasmic proteinchromosome I CDS1741329 1032 + 0.446705
VV1690 ABC-type spermidine/putrescine-binding periplasmic proteinchromosome I CDS1742507 1053 + 0.437797
VV1741 hypothetical proteinchromosome I CDS1794098 432 - 0.400463
VV1758 hypothetical proteinchromosome I CDS1806407 591 - 0.389171
VV1779 conserved hypothetical proteinchromosome I CDS1823810 363 + 0.421488
VV1819 conserved hypothetical proteinchromosome I CDS1848712 378 - 0.396825
VV1843 conserved hypothetical proteinchromosome I CDS1862000 363 + 0.424242
VV1930 hypothetical proteinchromosome I CDS1921267 564 - 0.400709
VV1937 lactoylglutathione lyasechromosome I CDS1927363 477 - 0.45283
VV1950 formiminoglutamasechromosome I CDS1938263 1203 + 0.517872
VV1951 urocanate hydratasechromosome I CDS1939528 1698 + 0.533569
VV1952 histidine ammonia-lyasechromosome I CDS1941231 1542 + 0.514916
VV1986 arginine decarboxylasechromosome I CDS1983205 1923 + 0.477379
VV1987 agmatinasechromosome I CDS1985128 936 + 0.491453
VV1988 permeasechromosome I CDS1986386 1248 + 0.50641
VV2044 sodium/alanine symporterchromosome I CDS2043994 1548 + 0.49031
VV2052 lactoylglutathione lyasechromosome I CDS2052897 450 - 0.486667
VV2053 tyrosine-specific transport proteinchromosome I CDS2053349 1206 - 0.492537
VV2055 conserved hypothetical proteinchromosome I CDS2055918 747 + 0.483266
VV2063 conserved hypothetical proteinchromosome I CDS2063106 1560 - 0.48141
VV2075 transcriptional regulator TyrRchromosome I CDS2078973 1545 - 0.48932
VV2080 para-aminobenzoate synthase, component Ichromosome I CDS2085215 1401 + 0.486081
VV2084 serine transporterchromosome I CDS2090061 1254 + 0.457735
VV2085 L-serine deaminasechromosome I CDS2091411 1362 + 0.480176
VV2092 GntR-family regulatory proteinchromosome I CDS2099729 1407 - 0.481166
VV2096 aspartate aminotransferasechromosome I CDS2104056 1200 + 0.495
VV2135 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferasechromosome I CDS2147178 2337 - 0.518614
VV2138 hypothetical proteinchromosome I CDS2151030 150 - 0.486667
VV2147 conserved hypothetical proteinchromosome I CDS2162166 930 + 0.487097
VV2247 hypothetical proteinchromosome I CDS2270526 780 + 0.478205
VV2253 conserved hypothetical proteinchromosome I CDS2273847 444 + 0.495495
VV2263 conserved hypothetical proteinchromosome I CDS2282231 450 - 0.475556
VV2267 glutathionylspermidine synthasechromosome I CDS2286226 1209 - 0.463193
VV2295 choline dehydrogenasechromosome I CDS2312038 1641 - 0.494211
VV2318 3-phosphoshikimate 1-carboxyvinyltransferasechromosome I CDS2338999 1287 - 0.475524
VV2336 amino acid ABC transporter, permease proteinchromosome I CDS2361417 684 - 0.482456
VV2337 ABC-type arginine transport system, permease componentchromosome I CDS2362101 741 - 0.493927
VV2338 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome I CDS2362932 777 - 0.472329
VV2339 ABC-type histidine transport system, ATPase componentchromosome I CDS2363926 834 - 0.48801
VV2381 lysine decarboxylasechromosome I CDS2413264 2136 - 0.470506
VV2382 cadaverine/lysine antiporterchromosome I CDS2415513 1359 - 0.482708
VV2400 lactoylglutathione lyasechromosome I CDS2432378 396 + 0.479798
VV2427 aspartate-semialdehyde dehydrogenasechromosome I CDS2459103 1014 - 0.480276
VV2428 erythronate-4-phosphate dehydrogenasechromosome I CDS2460113 1155 - 0.483117
VV2430 conserved hypothetical proteinchromosome I CDS2462830 2019 + 0.496781
VV2434 chorismate synthasechromosome I CDS2466673 1134 - 0.482363
VV2500 succinyl-diaminopimelate desuccinylasechromosome I CDS2531643 1206 + 0.509121
VV2504 dihydrodipicolinate synthasechromosome I CDS2534897 894 - 0.45302
VV2505 glycine cleavage system regulatory proteinchromosome I CDS2536111 588 + 0.462585
VV2536 nitrogen regulatory protein PIIchromosome I CDS2565342 345 - 0.446377
VV2596 putative AmpG proteinchromosome I CDS2622951 1401 + 0.488936
VV2604 selenocysteine lyasechromosome I CDS2629054 1212 + 0.507426
VV2611 N-acetylglutamate synthasechromosome I CDS2634195 1338 + 0.478326
VV2622 tetrahydrodipicolinate N-succinyltransferasechromosome I CDS2650355 1032 + 0.521318
VV2641 lysophospholipase L1chromosome I CDS2671865 876 + 0.505708
VV2644 putative oxidoreductasechromosome I CDS2676699 1485 + 0.506397
VV2645 putative oxidoreductasechromosome I CDS2678345 1437 + 0.505219
VV2674 phosphoserine phosphatasechromosome I CDS2711887 981 - 0.480122
VV2734 ABC-type dipeptide transport system, periplasmic componentchromosome I CDS2777535 1674 + 0.467145
VV2735 peptide ABC transporter, permease proteinchromosome I CDS2779377 987 + 0.45998
VV2736 peptide ABC transporter, permease proteinchromosome I CDS2780366 1026 + 0.492203
VV2737 peptide ABC transporter, ATP-binding proteinchromosome I CDS2781394 984 + 0.490854
VV2738 ABC-type oligopeptide transport system, ATPase componentchromosome I CDS2782415 996 + 0.477912
VV2744 iron(III) ABC transporter, ATP-binding proteinchromosome I CDS2792073 1029 - 0.480078
VV2748 nitrogen regulatory protein PIIchromosome I CDS2797250 399 - 0.446115
VV2751 H+/gluconate symporterchromosome I CDS2799503 1266 + 0.518957
VV2802 aspartokinasechromosome I CDS2858798 1188 - 0.448653
VV2851 phosphoglycerate dehydrogenasechromosome I CDS2908021 1230 + 0.465041
VV2875 pyrroline-5-carboxylate reductasechromosome I CDS2928871 819 + 0.528694
VV2882 glutaminasechromosome I CDS2933526 936 - 0.520299
VV2907 leucyl aminopeptidasechromosome I CDS2966834 1509 + 0.487078
VV2918 arginine deiminasechromosome I CDS2977210 1221 + 0.48321
VV2919 ornithine carbamoyltransferasechromosome I CDS2978566 1005 + 0.485572
VV2958 aminotransferase, class Vchromosome I CDS3026445 1122 - 0.481283
VV2959 aspartokinasechromosome I CDS3027958 1473 + 0.484725
VV2960 cobalamin-dependent methionine synthasechromosome I CDS3029512 3681 - 0.497419
VV2965 phosphoadenosine phosphosulfate reductasechromosome I CDS3043470 840 - 0.428571
VV2988 3-dehydroquinate synthetasechromosome I CDS3063854 1107 - 0.454381
VV2989 shikimate kinasechromosome I CDS3064978 519 - 0.466281
VV2999 argininosuccinate lyasechromosome I CDS3074499 1875 - 0.4944
VV3000 argininosuccinate synthasechromosome I CDS3076613 1257 - 0.490851
VV3001 acetylglutamate kinasechromosome I CDS3078055 810 - 0.498765
VV3002 acetylglutamate semialdehyde dehydrogenasechromosome I CDS3078869 1005 - 0.485572
VV3003 acetylornithine deacetylasechromosome I CDS3080022 1137 + 0.502199
VV3006 5;10-methylenetetrahydrofolate reductasechromosome I CDS3085272 999 - 0.455455
VV3007 aspartokinase II/homoserine dehydrogenase, methionine-sensitivechromosome I CDS3086366 2412 - 0.504146
VV3008 cystathionine gamma-synthasechromosome I CDS3088777 1167 - 0.510711
VV3009 transcriptional regulator of met regulonchromosome I CDS3090155 318 + 0.446541
VV3024 5-carboxymethyl-2-hydroxymuconate isomerasechromosome I CDS3104127 417 - 0.443645
VV3040 asparaginasechromosome I CDS3116542 957 - 0.527691
VV3053 putative arginine/ornithine succinyltransferasechromosome I CDS3129433 1041 - 0.482229
VV3054 acetylornithine aminotransferasechromosome I CDS3130687 1212 - 0.505776
VV3055 para-aminobenzoate synthase glutamine amidotransferase, component IIchromosome I CDS3132249 597 - 0.500838
VV3081 conserved hypothetical proteinchromosome I CDS3166246 888 + 0.528153
VV3088 serine acetyltransferasechromosome I CDS3171483 822 + 0.508516
VV3103 lysine 2;3-aminomutasechromosome I CDS3184243 1023 + 0.472141
VV3118 aspartate ammonia-lyasechromosome I CDS3197756 1452 + 0.471074
VV3129 sensor histidine kinasechromosome I CDS3208318 3471 - 0.524633
VV3130 permeasechromosome I CDS3211842 1248 - 0.536058
VV3134 3-dehydroquinate dehydratase IIchromosome I CDS3218133 516 + 0.505814
VV3148 phosphoglycerate dehydrogenasechromosome I CDS3231691 927 + 0.502697
VV3190 putative threonine efflux proteinchromosome I CDS3278816 672 + 0.504464
VV3200 putative multidrug resistance proteinchromosome I CDS3285509 1386 - 0.497835
VV3201 aminopeptidase Pchromosome I CDS3287907 1788 + 0.519575
VV3215 shikimate 5-dehydrogenasechromosome I CDS3306274 834 - 0.473621
VV3240 acetolactate synthase II, large subunitchromosome I CDS3331178 1647 + 0.523983
VV3242 branched-chain amino acid amiotransferasechromosome I CDS3333132 939 + 0.511182
VV3243 dihydroxy-acid dehydratasechromosome I CDS3334083 1842 + 0.540174
VV3244 threonine dehydratasechromosome I CDS3335928 1530 + 0.526144
VV3246 multidrug resistance proteinchromosome I CDS3338534 1221 + 0.497133
VV3247 ABC-type glutamine transport system, permease componentchromosome I CDS3340707 741 + 0.464238
VV3248 putative cyclohexadienyl dehydratase precursor signal peptide proteinchromosome I CDS3339823 924 - 0.453463