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2024-05-13 22:52:22

Gene list

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COG category: Amino acid transport and metabolism
Genomic element: chromosome 2

Number of genes found: 144

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Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VPA0003 peptide ABC transporter, ATP-binding proteinchromosome 2 CDS3876 933 - 0.484459
VPA0004 peptide ABC transporter, ATP-binding proteinchromosome 2 CDS4805 894 - 0.477629
VPA0008 putative amino acid ABC transporter, periplasmic amino acid-binding portionchromosome 2 CDS7634 756 - 0.449735
VPA0026 hypothetical proteinchromosome 2 CDS23389 828 - 0.461353
VPA0031 sodium/glutamate symporterchromosome 2 CDS25649 1236 + 0.46521
VPA0035 sodium/glutamate symporterchromosome 2 CDS29473 1227 + 0.466178
VPA0087 putative transporterchromosome 2 CDS79174 1773 + 0.488438
VPA0090 conserved hypothetical proteinchromosome 2 CDS83209 585 - 0.483761
VPA0093 hypothetical proteinchromosome 2 CDS85859 621 - 0.491143
VPA0098 putative efflux pump proteinchromosome 2 CDS89885 1491 + 0.488263
VPA0104 putative ring-cleaving dioxygenasechromosome 2 CDS97769 426 - 0.476526
VPA0108 hypothetical proteinchromosome 2 CDS101779 486 - 0.44856
VPA0112 putative peptidasechromosome 2 CDS104155 1848 - 0.494048
VPA0116 permeasechromosome 2 CDS108394 1353 + 0.495196
VPA0118 putative transcriptional regulatorchromosome 2 CDS110996 1458 - 0.485597
VPA0119 hypothetical proteinchromosome 2 CDS112525 900 + 0.477778
VPA0167 putative proteasechromosome 2 CDS160553 2166 - 0.446445
VPA0168 multidrug resistance protein Dchromosome 2 CDS163045 1206 - 0.501658
VPA0169 agmatinasechromosome 2 CDS164662 921 - 0.479913
VPA0170 biosynthetic arginine decarboxylasechromosome 2 CDS165584 1923 - 0.475299
VPA0185 putative branched chain amino acid transporterchromosome 2 CDS183285 1311 - 0.477498
VPA0192 tryptophanasechromosome 2 CDS190816 1401 + 0.487509
VPA0234 aminotransferase, class IIIchromosome 2 CDS238248 1380 - 0.513768
VPA0235 2-aminoethylphosphonate:pyruvateaminotransferasechromosome 2 CDS239654 1104 - 0.479167
VPA0238 ABC transporter, ATP-binding proteinchromosome 2 CDS242663 1119 + 0.474531
VPA0241 hypothetical proteinchromosome 2 CDS246294 909 + 0.475248
VPA0244 hypothetical proteinchromosome 2 CDS249125 1401 + 0.488936
VPA0246 conserved hypothetical proteinchromosome 2 CDS250561 1203 + 0.472984
VPA0253 putative transport proteinchromosome 2 CDS256625 1497 - 0.46159
VPA0254 L-serine dehydratase 1chromosome 2 CDS258481 1371 - 0.478483
VPA0289 hypothetical proteinchromosome 2 CDS289828 612 - 0.426471
VPA0291 conserved hypothetical proteinchromosome 2 CDS291499 372 + 0.438172
VPA0302 hypothetical proteinchromosome 2 CDS303043 390 + 0.433333
VPA0314 hypothetical proteinchromosome 2 CDS312565 909 - 0.480748
VPA0333 conserved hypothetical proteinchromosome 2 CDS326797 1209 - 0.468983
VPA0349 conserved hypothetical proteinchromosome 2 CDS341424 660 - 0.45
VPA0350 putative ATP-binding component of ABC transporterchromosome 2 CDS342085 1020 - 0.453922
VPA0351 putative permease of ABC transporterchromosome 2 CDS343104 786 - 0.451654
VPA0361 hypothetical proteinchromosome 2 CDS355004 255 - 0.478431
VPA0367 spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding proteinchromosome 2 CDS362693 1035 + 0.435749
VPA0371 hypothetical proteinchromosome 2 CDS366206 780 - 0.464103
VPA0374 periplasmic L-asparaginase IIchromosome 2 CDS370709 1065 - 0.480751
VPA0378 conserved hypothetical proteinchromosome 2 CDS374892 615 + 0.430894
VPA0384 hypothetical proteinchromosome 2 CDS378712 1059 + 0.516525
VPA0391 hypothetical proteinchromosome 2 CDS388634 429 + 0.454545
VPA0399 putative aminotransferasechromosome 2 CDS396178 1149 - 0.494343
VPA0403 putative membrane proteinchromosome 2 CDS400001 909 - 0.455446
VPA0468 prolyl endopeptidasechromosome 2 CDS463903 2265 + 0.453863
VPA0502 putative oxidoreductasechromosome 2 CDS508712 1272 + 0.471698
VPA0505 putative histidinol phosphatase and related hydrolases of the PHP familychromosome 2 CDS511331 747 + 0.46988
VPA0509 putative tyrosine-specific transport proteinchromosome 2 CDS514462 1158 + 0.468912
VPA0520 multidrug resistance protein Dchromosome 2 CDS526902 1194 + 0.457286
VPA0525 putative transporter, DME familychromosome 2 CDS529665 891 - 0.482604
VPA0530 AzlC family proteinchromosome 2 CDS534755 711 - 0.485232
VPA0532 conserved hypothetical proteinchromosome 2 CDS536601 633 + 0.467615
VPA0556 GGDEF family proteinchromosome 2 CDS554210 1443 + 0.455994
VPA0569 putative permeasechromosome 2 CDS568291 903 + 0.477298
VPA0576 phenylalanine-4-hydroxylasechromosome 2 CDS576442 795 + 0.450314
VPA0585 tryptophan synthase, beta subunitchromosome 2 CDS583108 1224 - 0.474673
VPA0592 hypothetical proteinchromosome 2 CDS592324 840 - 0.44881
VPA0613 putative permeasechromosome 2 CDS617839 879 + 0.492605
VPA0615 hydroxymethylglutaryl-CoA lyasechromosome 2 CDS619330 903 - 0.483942
VPA0636 arginine ABC transporter, ATP-binding proteinchromosome 2 CDS642512 744 + 0.452957
VPA0637 arginine ABC transporter, periplasmic arginine-binding proteinchromosome 2 CDS643344 744 + 0.446237
VPA0638 arginine ABC transporter, permease proteinchromosome 2 CDS644089 690 + 0.501449
VPA0639 arginine ABC transporter, permease proteinchromosome 2 CDS644775 669 + 0.481315
VPA0697 putative nonspecific acid phosphatase precursorchromosome 2 CDS721095 984 - 0.465447
VPA0701 putative oxalate/formate antiporterchromosome 2 CDS726618 1233 - 0.479319
VPA0755 putative metalloproteinasechromosome 2 CDS785300 2106 + 0.472934
VPA0757 hypothetical proteinchromosome 2 CDS787957 885 - 0.463277
VPA0765 putative glutamate synthetasechromosome 2 CDS796831 1542 + 0.496757
VPA0774 lactoylglutathione lyasechromosome 2 CDS805505 387 - 0.459948
VPA0796 putative L-allo-threonine aldolasechromosome 2 CDS823684 1077 + 0.468895
VPA0801 glycine cleavage system P proteinchromosome 2 CDS828140 2865 - 0.491798
VPA0802 glycine cleavage system H proteinchromosome 2 CDS831133 381 - 0.459318
VPA0803 serine hydroxymethyltransferasechromosome 2 CDS831565 1296 - 0.486111
VPA0805 glycine cleavage system protein T2chromosome 2 CDS834120 1119 + 0.484361
VPA0819 amino acid ABC transporter, permease proteinchromosome 2 CDS850324 921 - 0.438654
VPA0820 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome 2 CDS851326 822 - 0.467153
VPA0821 amino acid ABC transporter, permease proteinchromosome 2 CDS852157 798 - 0.457393
VPA0822 amino acid ABC transporter, ATP-binding proteinchromosome 2 CDS852954 735 - 0.465306
VPA0872 arylesterasechromosome 2 CDS912953 603 - 0.462687
VPA0875 putative carboxylasechromosome 2 CDS918501 936 - 0.450855
VPA0876 conserved hypothetical proteinchromosome 2 CDS919433 684 - 0.425439
VPA0936 amino acid biosynthesis aminotransferasechromosome 2 CDS968301 1197 - 0.437761
VPA0973 putative MFS family transport proteinchromosome 2 CDS1018868 1161 + 0.481481
VPA1003 putataive branched-chain amino acid transport protein AzlCchromosome 2 CDS1056552 732 + 0.502732
VPA1011 L-allo-threonine aldolasechromosome 2 CDS1065282 1005 + 0.469652
VPA1016 multidrug resistance protein Dchromosome 2 CDS1069624 1134 - 0.448854
VPA1063 hypothetical proteinchromosome 2 CDS1119798 954 - 0.489518
VPA1067 serine transporterchromosome 2 CDS1125446 1257 + 0.456643
VPA1070 hypothetical proteinchromosome 2 CDS1129269 342 + 0.447368
VPA1109 putative ATP-binding component of ABC transporterchromosome 2 CDS1169620 1185 - 0.464135
VPA1110 putative permease of ABC transporterchromosome 2 CDS1170807 843 - 0.45433
VPA1111 putative glycine betaine-binding ABC transporterchromosome 2 CDS1171740 939 - 0.463259
VPA1112 putative choline dehydrogenasechromosome 2 CDS1172727 1746 - 0.488545
VPA1129 putative hydroxymethylglutaryl-CoA lyasechromosome 2 CDS1193730 930 + 0.501075
VPA1136 putative transcriptional regulator; also putative ATP-binding component of a transport systemchromosome 2 CDS1200544 1416 - 0.469633
VPA1148 putative high-affinity branched-chain amino acid transport ATP-binding proteinchromosome 2 CDS1211400 822 - 0.476886
VPA1149 hypothetical proteinchromosome 2 CDS1212290 1245 - 0.485944
VPA1150 putative high-affinity branched-chain amino acid transport permease proteinchromosome 2 CDS1213580 1068 - 0.480337
VPA1151 putative ABC transporter, membrane spanning proteinchromosome 2 CDS1214659 894 - 0.480984
VPA1153 putative high-affinity branched-chain amino acid transport ATP-binding proteinchromosome 2 CDS1217504 819 - 0.479853
VPA1184 putative drug transport transmembrane proteinchromosome 2 CDS1253136 1179 - 0.469042
VPA1185 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, DAHP synthetasechromosome 2 CDS1254463 1053 - 0.461538
VPA1193 peptidase Tchromosome 2 CDS1265428 1230 - 0.465041
VPA1206 conserved hypothetical proteinchromosome 2 CDS1280656 621 + 0.483092
VPA1215 hypothetical proteinchromosome 2 CDS1288149 942 + 0.476645
VPA1217 hypothetical proteinchromosome 2 CDS1289874 1038 - 0.463391
VPA1232 conserved hypothetical proteinchromosome 2 CDS1306585 615 - 0.460163
VPA1236 conserved hypothetical proteinchromosome 2 CDS1308895 1263 + 0.470309
VPA1237 putative GntR-family regulatory proteinchromosome 2 CDS1310160 1437 - 0.475296
VPA1267 hypothetical proteinchromosome 2 CDS1347400 438 - 0.481735
VPA1283 putative MFS transporterchromosome 2 CDS1361618 1215 + 0.463374
VPA1314 thermostable direct hemolysin Achromosome 2 CDS1391960 570 + 0.35614
VPA1327 putative exoenzyme Tchromosome 2 CDS1402532 711 - 0.416315
VPA1378 thermostable direct hemolysin Schromosome 2 CDS1450828 570 + 0.354386
VPA1385 putative integral membrane proteinchromosome 2 CDS1456060 333 - 0.444444
VPA1413 hypothetical proteinchromosome 2 CDS1486671 402 + 0.440298
VPA1467 protease IIchromosome 2 CDS1565180 2001 - 0.476762
VPA1484 hypothetical proteinchromosome 2 CDS1584962 1182 - 0.468697
VPA1496 prolyl endopeptidasechromosome 2 CDS1598040 2034 - 0.474435
VPA1509 threonine 3-dehydrogenasechromosome 2 CDS1612798 1032 - 0.471899
VPA1512 ScrB (extracellular solute binging protein)chromosome 2 CDS1617722 966 - 0.444099
VPA1513 ScrA (aminotransferase)chromosome 2 CDS1618718 1407 - 0.459844
VPA1523 glyoxylase I family proteinchromosome 2 CDS1626613 384 + 0.460938
VPA1527 conserved hypothetical proteinchromosome 2 CDS1629699 756 - 0.462963
VPA1529 hypothetical proteinchromosome 2 CDS1631144 927 - 0.459547
VPA1574 putative membrane transport proteinchromosome 2 CDS1670691 1191 + 0.47691
VPA1576 putative transmembrane proteinchromosome 2 CDS1672966 870 + 0.482759
VPA1605 hypothetical proteinchromosome 2 CDS1704585 390 - 0.423077
VPA1611 putative carboxypeptidase G2chromosome 2 CDS1710175 1125 - 0.487111
VPA1630 sodium/dicarboxylate symporterchromosome 2 CDS1733349 1218 + 0.485222
VPA1634 putrescine transport proteinchromosome 2 CDS1736640 1311 - 0.480549
VPA1635 ornithine decarboxylase, induciblechromosome 2 CDS1738012 2181 - 0.458505
VPA1647 hypothetical multidrug resistance protein Dchromosome 2 CDS1757631 1209 + 0.501241
VPA1660 putative transport proteinchromosome 2 CDS1779042 1206 + 0.503317
VPA1662 putative diaminopimelate decarboxylase proteinchromosome 2 CDS1782041 1203 + 0.503741
VPA1685 putative lactoylglutathione lyasechromosome 2 CDS1806249 420 + 0.466667
VPA1691 hypothetical proteinchromosome 2 CDS1809953 696 + 0.45546
VPA1724 sodium/proline symporterchromosome 2 CDS1840181 1494 - 0.485274
VPA1739 oligopeptide ABC transporter, periplasmic oligopeptide-binding proteinchromosome 2 CDS1860970 1626 - 0.482165
VPA1740 hypothetical proteinchromosome 2 CDS1862737 711 + 0.486639
VPA1746 hypothetical proteinchromosome 2 CDS1868240 666 - 0.447447